mRNA_H-elongata_contig57163.13171.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57163.13171.1 vs. uniprot
Match: D7G2X2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X2_ECTSI) HSP 1 Score: 228 bits (581), Expect = 7.380e-73 Identity = 118/179 (65.92%), Postives = 134/179 (74.86%), Query Frame = 1
Query: 1 QSLRLTSDDRLREATVDVANKAVSDFGQTSGAVKAFVSGLTNLFVLFSGDKGADSDSRYSGAP---KEALSVGELEAGIRLEYAKNYLWTGDVDARLYEEDCTFTDPTLSFSGLATYKRNVESLQGTVNFLVINSRSELYSCDLKEEDSCVQTRWRMVGALRLPWGPIIDVVGRTKFSY 528
++LRL E D + AVS+F QTSG+VKAFV GLT+LFV F+G D DS A K +LS ELEAGIR EYAKNYLWTGD++ LYEEDC FTDPTLSFSGL+TYKRNV SLQG ++ V NSRS LYSC+L++EDSCVQTRWRMVG LRLPWGP IDVVGRT FSY
Sbjct: 27 RALRLAPRQEQGEGDTDSHSTAVSEFEQTSGSVKAFVGGLTDLFVRFAG---GDEDSEALSADTSAKASLSEAELEAGIRQEYAKNYLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSVLYSCELRQEDSCVQTRWRMVGDLRLPWGPTIDVVGRTTFSY 202
BLAST of mRNA_H-elongata_contig57163.13171.1 vs. uniprot
Match: A0A835YYI6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYI6_9STRA) HSP 1 Score: 146 bits (369), Expect = 4.810e-41 Identity = 77/167 (46.11%), Postives = 102/167 (61.08%), Query Frame = 1
Query: 31 LREATVDVANKAVSDFGQTSGAVKAFVSGLTNLFVLFSGDKGADSDSRYSGAPKEALSVGELEAGIRLEYA-KNYLWTGDVDARLYEEDCTFTDPTLSFSGLATYKRNVESLQGTVNFLVINSRSELYSCDLKEEDSCVQTRWRMVGALRLPWGPIIDVVGRTKFSY 528
L T ++ VSD+ T G K VSGLTN F S K + + LS +L GI+ ++ K YLWTG +D LY EDC FTDPTLSF GL+T+K+NV SL+ VN LV +L SC+L E++ CV+ RWRM G ++LPW P +DV+GRT+F+Y
Sbjct: 23 LAAQTKQDSSDTVSDYAGTGGIAKGIVSGLTNAFNAISPAKEEEVVVKAG-----KLSPRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFGVDLLSCELNEKEKCVRARWRMWGYIKLPWQPAVDVIGRTRFTY 184
BLAST of mRNA_H-elongata_contig57163.13171.1 vs. uniprot
Match: A0A7S1DMA4_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DMA4_HEMAN) HSP 1 Score: 135 bits (340), Expect = 3.880e-36 Identity = 74/167 (44.31%), Postives = 103/167 (61.68%), Query Frame = 1
Query: 31 LREATVDVANKAVSDFGQTSGAVKAFVSGLTNLFVLFSGDKGADSDSRYSGAPKEALSVGELEAGIRLEYAKNYLWTGDVDARLYEEDCTFTDPTLSFSGLATYKRNVESLQGTVNFLVINSRS-ELYSCDLKEEDSCVQTRWRMVGALRLPWGPIIDVVGRTKFSY 528
LR A D + +GQ+S VKA VSGLTNL +G D S+ ++ +S EL GI+ +Y + YLWTG++D LY+ DC FTDPTLSF GL T++ N+ +L+ ++FLV + S E+Y CDL + V+ WRMVG L++PW P ID+ G T F+Y
Sbjct: 75 LRAAEEDTTK--TTSYGQSSTGVKAIVSGLTNLVNAVM-QRGEDP-SKLDRPQRDDISEQELLEGIKGDYERRYLWTGEIDPYLYDYDCVFTDPTLSFKGLKTFQSNLANLRPFIDFLVQDDCSVEMYGCDLVLGEPQVKASWRMVGRLKVPWTPTIDLNGTTVFTY 237
BLAST of mRNA_H-elongata_contig57163.13171.1 vs. uniprot
Match: A0A7S0Z2E3_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z2E3_9CRYP) HSP 1 Score: 134 bits (337), Expect = 1.010e-35 Identity = 71/167 (42.51%), Postives = 105/167 (62.87%), Query Frame = 1
Query: 31 LREATVDVANKAVSDFGQTSGAVKAFVSGLTNLFVLFSGDKGADSDSRYSGAPKEALSVGELEAGIRLEYAKNYLWTGDVDARLYEEDCTFTDPTLSFSGLATYKRNVESLQGTVNFLVINSRS-ELYSCDLKEEDSCVQTRWRMVGALRLPWGPIIDVVGRTKFSY 528
LR + D + + +GQ+S VKA VSGLTNL +G D S+ + ++ ++ EL GI+ +Y + YLWTGD+D LY+ +C FTDPTLSF+GL T++ N+ +L+ ++FLV + E+Y CDL + V+ WRMVG L++PW P ID+ G T F+Y
Sbjct: 72 LRASEKDTSK--TTSYGQSSTGVKAIVSGLTNLVNAVM-QRGEDP-SKLNRPERDGITEQELLEGIKGDYERRYLWTGDIDPYLYDYECVFTDPTLSFTGLETFQSNLANLRPFIDFLVQEDCAVEMYGCDLVPGEPRVKASWRMVGRLKVPWTPTIDLNGTTVFTY 234
BLAST of mRNA_H-elongata_contig57163.13171.1 vs. uniprot
Match: A0A7S4KR88_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KR88_GUITH) HSP 1 Score: 133 bits (335), Expect = 1.740e-35 Identity = 67/163 (41.10%), Postives = 103/163 (63.19%), Query Frame = 1
Query: 49 DVANKAVSDFGQTSGAVKAFVSGLT---NLFVLFSGDKGADSDSRYSGAPKEALSVGELEAGIRLEYAKNYLWTGDVDARLYEEDCTFTDPTLSFSGLATYKRNVESLQGTVNFLVINSRSELYSCDLKEEDSCVQTRWRMVGALRLPWGPIIDVVGRTKFSY 528
D + +S + ++SG K +S LT N V G+ +S++R LS+ +L+ GI +Y + YLWTG++D LY+E+C FTDPT+SF GL T+++N+ +L+ ++ LV + +LYSC+LKE++ V RWRM G L LPW P+ID+VG T F +
Sbjct: 68 DKPRREISTYEKSSGVTKFIISSLTELVNAVVGRGGEVPEESNTRE-------LSLEQLKLGIEDDYRRCYLWTGEIDPSLYDENCKFTDPTISFEGLRTFQKNLANLRPFIDALVKDYDVDLYSCELKEKNQQVVARWRMRGQLALPWRPLIDLVGSTSFKF 223
BLAST of mRNA_H-elongata_contig57163.13171.1 vs. uniprot
Match: A0A061RRB7_9CHLO (Uncharacterized protein n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RRB7_9CHLO) HSP 1 Score: 124 bits (310), Expect = 1.100e-31 Identity = 65/154 (42.21%), Postives = 90/154 (58.44%), Query Frame = 1
Query: 70 SDFGQTSGAVKAFVSGLTNLFVLFSGDKGADSDSRYSGAPKEALSVGELEAGIRLEYAKN-YLWTGDVDARLYEEDCTFTDPTLSFSGLATYKRNVESLQGTVNFLVINSRSELYSCDLKEEDSCVQTRWRMVGALRLPWGPIIDVVGRTKFSY 528
S T+ VK+ VSGLT SG D + +S +L G+ ++ +N YLW+G +D LY DCTFTDPTLSF GL T++RN+ +LQ ++ LV N EL L E+ + V+ RWRM G ++LPWGP I++ GRT+F Y
Sbjct: 78 SSHNSTNFVVKSIVSGLTKAINWTSGSPPERVDYSTEEDTRAPVSPQQLLWGVEKDFTENGYLWSGAIDTNLYCRDCTFTDPTLSFKGLETFERNLRNLQPWIDRLVRNEVCELIDIQLLEDSNEVRARWRMKGDIQLPWGPQINLTGRTRFCY 231
BLAST of mRNA_H-elongata_contig57163.13171.1 vs. uniprot
Match: R1FIQ6_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FIQ6_EMIHU) HSP 1 Score: 122 bits (306), Expect = 1.270e-31 Identity = 64/156 (41.03%), Postives = 101/156 (64.74%), Query Frame = 1
Query: 67 VSDFGQTSGAVKAFVSGLTNLFVLFSGDKGADSDSRYSGAPKEALSVGELEAGIRLEYAKN-YLWTGDVDARLYEEDCTFTDPTLSFSGLATYKRNVESLQGTVN-FLVINSRS-ELYSCDLKEEDSCVQTRWRMVGALRLPWGPIIDVVGRTKFS 525
+++ +TS A + VS LT L SG + + R +E+L G++ AG+R ++ +N YLW+G + A LY+EDCTFTDPTLSF+GL+T++RN+ +L + F+ +RS EL S L ++ + V+ WRM+G L LPW P +D+ GRT+++
Sbjct: 16 LNEISETSRATRGLVSSLTALVNTISGGEPPSAPRRRE---QESLDAGDVLAGLRTDFEENEYLWSGRITAELYDEDCTFTDPTLSFAGLSTFERNLANLDPWIERFVPPTARSVELKSLRLVDDGAAVEAEWRMLGDLALPWRPRLDLGGRTRYT 168
BLAST of mRNA_H-elongata_contig57163.13171.1 vs. uniprot
Match: A0A6S9RDB2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A6S9RDB2_CHRCT) HSP 1 Score: 123 bits (308), Expect = 9.160e-30 Identity = 67/159 (42.14%), Postives = 98/159 (61.64%), Query Frame = 1
Query: 70 SDFGQTSGAVKAFVSGLTNLFVLFSG---DKGA--DSDSRYSGAPKEALSVGELEAGIRLEY-AKNYLWTGDVDARLYEEDCTFTDPTLSFSGLATYKRNVESLQGTVNFLVINSRSELYSCDLKEEDSCVQTRWRMVGALRLPWGPIIDVVGRTKFSY 528
+DF TS V+ VS LT L SG D+ A ++DS + L+ EL G+R +Y A+ YLWTGD+D LY+ DC FTDPTLSF GL+T++RN+ +L+ ++ LV + +LYS +++ ++ WRM G + LPW P+ID+ G T F+Y
Sbjct: 309 ADFQGTSPFVQGVVSSLTALVNAVSGKTMDEPAALEADSEL----RPPLTPSELLEGVRDDYVARKYLWTGDIDPNLYDSDCVFTDPTLSFKGLSTFQRNIANLKPLLDALVRDPVVDLYSISSTVDETQIKATWRMKGEIALPWAPVIDLTGSTVFTY 463
BLAST of mRNA_H-elongata_contig57163.13171.1 vs. uniprot
Match: C1N9A8_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N9A8_MICPC) HSP 1 Score: 118 bits (296), Expect = 2.760e-29 Identity = 69/183 (37.70%), Postives = 102/183 (55.74%), Query Frame = 1
Query: 70 SDFGQTSGAVKAFVSGLTNLF-----VLFSGDKGADSDSR-----------YSGAPKEALSVGELEAGIRLEYAK-NYLWTGDVDARLYEEDCTFTDPTLSFSGLATYKRNVESLQGTVNFLVINSRSELYSCDLKEEDS-------------CVQTRWRMVGALRLPWGPIIDVVGRTKFSY 528
S + +TSGAVKA VSGLT + V S G++ ++ + +P++A + L I E+ + YLWTGD++ +Y+ CTFTDPTLSF+GL T++ N+++LQ + LV NS ELYSC++ ++ S V+ WRM G L LPW P ID+ G+T F +
Sbjct: 85 SKYEETSGAVKALVSGLTAIVNAVGSVTSSSSSGSNDGAKLTRKERRDARPFPSSPRDATA---LRDDIAREFTEAKYLWTGDINPEMYDLFCTFTDPTLSFAGLQTFETNLKNLQPVLRRLVRNSNVELYSCEIVDDGSGGXXXXXXXXXXXSVRASWRMTGDLNLPWRPRIDLTGQTTFGF 264
BLAST of mRNA_H-elongata_contig57163.13171.1 vs. uniprot
Match: A0A7S3QAL5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QAL5_9STRA) HSP 1 Score: 116 bits (291), Expect = 4.990e-29 Identity = 69/153 (45.10%), Postives = 89/153 (58.17%), Query Frame = 1
Query: 100 KAFVSGLTNLFVLFSGDKGADSDSRYSGAPKEALSV------GELEAGIRLEYA-KNYLWTGDVDARLYEEDCTFTDPTLSFSGLATYKRNVESLQGTVNFLVIN--SRSELYSCDLKEEDSCVQTRWRMVGAL-RLPWGPIIDVVGRTKFSY 528
K VS LT + F G+DSD G + + + +L IR +Y KNYLWTGD+ +E+DCTFTDPTLSFSG + NV++L V FL + ++S+L L EE+ V+TRW MVG L LPW P IDV+GRTKF Y
Sbjct: 53 KGVVSSLTGIVNFF---MGSDSDDDGDGGIESGVPIPPPRTPSDLLEEIRKDYVDKNYLWTGDIYLPAFEKDCTFTDPTLSFSGRDKFVSNVKNLVPIVKFLKQDGTNKSDLLDISLNEEEGYVETRWNMVGDLYALPWKPAIDVIGRTKFWY 202 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57163.13171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57163.13171.1 >prot_H-elongata_contig57163.13171.1 ID=prot_H-elongata_contig57163.13171.1|Name=mRNA_H-elongata_contig57163.13171.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp QSLRLTSDDRLREATVDVANKAVSDFGQTSGAVKAFVSGLTNLFVLFSGDback to top mRNA from alignment at H-elongata_contig57163:1..1120- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57163.13171.1 ID=mRNA_H-elongata_contig57163.13171.1|Name=mRNA_H-elongata_contig57163.13171.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1120bp|location=Sequence derived from alignment at H-elongata_contig57163:1..1120- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57163:1..1120- >mRNA_H-elongata_contig57163.13171.1 ID=mRNA_H-elongata_contig57163.13171.1|Name=mRNA_H-elongata_contig57163.13171.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1056bp|location=Sequence derived from alignment at H-elongata_contig57163:1..1120- (Himanthalia elongata Himel1 dioecious)back to top |