mRNA_H-elongata_contig11684.1317.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11684.1317.1
Unique NamemRNA_H-elongata_contig11684.1317.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11684.1317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11684contigH-elongata_contig11684:6005..6994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size265
Cds size264
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11684.1317.1prot_H-elongata_contig11684.1317.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11684 6005..6994 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929679.5726502-CDS-H-elongata_contig11684:6004..60601622929679.5726502-CDS-H-elongata_contig11684:6004..6060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11684 6005..6060 +
1691679116.7898011-CDS-H-elongata_contig11684:6004..60601691679116.7898011-CDS-H-elongata_contig11684:6004..6060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11684 6005..6060 +
1622929679.5867484-CDS-H-elongata_contig11684:6467..65561622929679.5867484-CDS-H-elongata_contig11684:6467..6556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11684 6468..6556 +
1691679116.800711-CDS-H-elongata_contig11684:6467..65561691679116.800711-CDS-H-elongata_contig11684:6467..6556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11684 6468..6556 +
1622929679.6021278-CDS-H-elongata_contig11684:6875..69941622929679.6021278-CDS-H-elongata_contig11684:6875..6994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11684 6876..6994 +
1691679116.8081203-CDS-H-elongata_contig11684:6875..69941691679116.8081203-CDS-H-elongata_contig11684:6875..6994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11684 6876..6994 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11684.1317.1

>prot_H-elongata_contig11684.1317.1 ID=prot_H-elongata_contig11684.1317.1|Name=mRNA_H-elongata_contig11684.1317.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
NTQSAATSFFGVTTTSDRNCWCSNDVGYMVPEVKCDQPSICQTPKGCIGS
WISNVFSFGPSDALEYIYHGCYGEHTRFMYHAQQKFA*
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mRNA from alignment at H-elongata_contig11684:6005..6994+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11684.1317.1 ID=mRNA_H-elongata_contig11684.1317.1|Name=mRNA_H-elongata_contig11684.1317.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=990bp|location=Sequence derived from alignment at H-elongata_contig11684:6005..6994+ (Himanthalia elongata Himel1 dioecious)
AACACTCAATCGGCCGCCACGAGCTTTTTCGGTGTCACAACGACCTCAGA
TAGGAAGTGAGTCAATGTCTCACGCACCACATTTTGCGTACAAAATGTAG
AGTGTGTAGTTGACATAATATATGTCAAGTAATGTTTCCGTCGATAAGCA
GTCAAAGCAGTTTTACACCGCAAGGGTTGATGGTGGGGAGCCGAATCCGA
TAGCGTTAACATAGGCACGCACGTTTGCCTAAGGCGTCGATTTAGATAAA
TTTGTTATTTTGTGGTGTCAGAGACCAGAGGGAATTCGTACAAAGTATCT
TGGAGGCACGGGTGAATGGGAAAACTATTCGCATGTGTCGAATGGGGGTG
ATATCTTCATCGTGATCTACGCCATTATTTCCGAGCGGATCTGCGAACGC
TATATGAGGGATAACACTTAATCATTCGTCCACATTTGAATTCGGTGAAT
GTCTGGTGCGCAGTTGCTGGTGCAGTAATGACGTCGGATACATGGTCCCA
GAAGTCAAGTGTGATCAGCCGTCCATCTGCCAAACCCCCAAAGGATGCAT
CGGTAGGTTTGACGGCTGGAAACCTATCACACCTTTCGTGGAGGCGTGGG
GGGGAATGCGGGAAACGGGAGGATCTGTGCGTTTGCTATTCTCCCACAAC
GCTGGGAAAATGTTGTACTTTATTACGTATTGCGAATATTGAGGATTGCG
CGCGTCATGGATTGGGCGATCAGCATTACCTTTGTACGTACGTTAGGACG
ACTTATCGCTCATACAAGGGTAGCTGATTCTTACTTCGACACATTTCATT
CCTTACCCTCCCTTGCCTCTAGCACCTTTCCATTTCATTTAATAACTTCC
GTGCTCACCCATTCATGATAGGATCTTGGATAAGCAATGTCTTCTCGTTT
GGGCCTTCCGACGCTCTCGAATATATCTACCACGGATGCTACGGGGAGCA
CACTCGCTTTATGTATCACGCTCAGCAGAAATTTGCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig11684:6005..6994+

>mRNA_H-elongata_contig11684.1317.1 ID=mRNA_H-elongata_contig11684.1317.1|Name=mRNA_H-elongata_contig11684.1317.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig11684:6005..6994+ (Himanthalia elongata Himel1 dioecious)
AACACTCAATCGGCCGCCACGAGCTTTTTCGGTGTCACAACGACCTCAGA
TAGGAAAACACTCAATCGGCCGCCACGAGCTTTTTCGGTGTCACAACGAC
CTCAGATAGGAATTGCTGGTGCAGTAATGACGTCGGATACATGGTCCCAG
AAGTCAAGTGTGATCAGCCGTCCATCTGCCAAACCCCCAAAGGATGCATC
GTTGCTGGTGCAGTAATGACGTCGGATACATGGTCCCAGAAGTCAAGTGT
GATCAGCCGTCCATCTGCCAAACCCCCAAAGGATGCATCGGATCTTGGAT
AAGCAATGTCTTCTCGTTTGGGCCTTCCGACGCTCTCGAATATATCTACC
ACGGATGCTACGGGGAGCACACTCGCTTTATGTATCACGCTCAGCAGAAA
TTTGCGTGAGATCTTGGATAAGCAATGTCTTCTCGTTTGGGCCTTCCGAC
GCTCTCGAATATATCTACCACGGATGCTACGGGGAGCACACTCGCTTTAT
GTATCACGCTCAGCAGAAATTTGCGTGA
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