mRNA_H-elongata_contig57140.13167.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57140.13167.1
Unique NamemRNA_H-elongata_contig57140.13167.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig57140.13167.1 vs. uniprot
Match: D7G3L4_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L4_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 2.000e-9
Identity = 62/153 (40.52%), Postives = 73/153 (47.71%), Query Frame = 1 
Query:  211 EGGTRGVCTEGSGRKGR-------EEKLRRGAVEVTVAVSAERSEADETLARRHAEVLESYRAARSELASVHMRTRMCG----------WAARRSAMAFWRLATTACAVRDNAGC----ESCTRC--SGDKKYGSGRPGGSQVITGLTIHAPT 600
            EG +  V   GSG +GR       +  LR G     VA +A        L R+HAE  E  R ARSELA VH+RTRMCG          WAARR+A AFWRL TT+      A       SC RC  +G  ++GS           LTI APT
Sbjct: 1243 EGSSNSVGDGGSGGRGRVPGEAGVQAALREGVAGAHVAAAAAAQTKANELKRQHAEAQEESRLARSELACVHLRTRMCGARVLSGVFHKWAARRAARAFWRLRTTSTTGNSPAIAGGVVSSCARCGAAGTGRHGSLDGDDRSTSAALTIEAPT 1395
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BLAST of mRNA_H-elongata_contig57140.13167.1 vs. uniprot
Match: A0A6H5L7S3_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S3_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 9.620e-8
Identity = 57/125 (45.60%), Postives = 66/125 (52.80%), Query Frame = 1 
Query:  286 VEVTVAVSAERSEADETLARRHAEVLESYRAARSELASVHMRTRMCG----------WAARRSAMAFWRLATTACAVRDNAGC----ESCTRCSGDKKYGSGRPG---GSQVITG--LTIHAPTP 603
            V    A +A ++EADE L R+H E  E  R ARSELA VH+RTRMCG          WAARR+A AFWRL TT+     +A       SC RC      G+GR G   G    T   LTI AP P
Sbjct: 1277 VVAAAATTAAQAEADE-LKRQHVEAQEESRLARSELACVHLRTRMCGARVLSGVFHKWAARRAAGAFWRLKTTSTTGNSSAIAGSVVSSCARCGA---AGTGRQGSLDGDDRPTSAVLTIEAPIP 1397
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57140.13167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3L4_ECTSI2.000e-940.52PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L7S3_9PHAE9.620e-845.60PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57140contigH-elongata_contig57140:1037..3338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1591
Cds size1590
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57140.13167.1prot_H-elongata_contig57140.13167.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57140 1038..3338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930927.6652393-CDS-H-elongata_contig57140:1037..21591622930927.6652393-CDS-H-elongata_contig57140:1037..2159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57140 1038..2159 -
1691679628.3270912-CDS-H-elongata_contig57140:1037..21591691679628.3270912-CDS-H-elongata_contig57140:1037..2159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57140 1038..2159 -
1622930927.6840618-CDS-H-elongata_contig57140:2481..25231622930927.6840618-CDS-H-elongata_contig57140:2481..2523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57140 2482..2523 -
1691679628.33901-CDS-H-elongata_contig57140:2481..25231691679628.33901-CDS-H-elongata_contig57140:2481..2523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57140 2482..2523 -
1622930927.6959944-CDS-H-elongata_contig57140:2553..26051622930927.6959944-CDS-H-elongata_contig57140:2553..2605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57140 2554..2605 -
1691679628.3487368-CDS-H-elongata_contig57140:2553..26051691679628.3487368-CDS-H-elongata_contig57140:2553..2605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57140 2554..2605 -
1622930927.7146275-CDS-H-elongata_contig57140:2964..33381622930927.7146275-CDS-H-elongata_contig57140:2964..3338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57140 2965..3338 -
1691679628.358779-CDS-H-elongata_contig57140:2964..33381691679628.358779-CDS-H-elongata_contig57140:2964..3338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57140 2965..3338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57140.13167.1

>prot_H-elongata_contig57140.13167.1 ID=prot_H-elongata_contig57140.13167.1|Name=mRNA_H-elongata_contig57140.13167.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=530bp
LTITQGSSDERSSRRKKACASIAAVLVRRQARQAVLAPALLRWRRATAHS
SFPGSSGKESSNASLADIGGEGGTRGVCTEGSGRKGREEKLRRGAVEVTV
AVSAERSEADETLARRHAEVLESYRAARSELASVHMRTRMCGWAARRSAM
AFWRLATTACAVRDNAGCESCTRCSGDKKYGSGRPGGSQVITGLTIHAPT
PGGGGGGGGGPLSWGSPLGESGGHEVELDFDVGWEMRSSLALSNDTDDHH
QHDHERLDCCGPKSAQRRPRLRLMPRPRDERGSQYFFAANASPPPTVVTT
LLSSPESDGTAAANNNGRSGSVRKLLDSMDGGRGQRDDEAGRRTRAAEGR
NRKNSSPSPPLPPVPLPPPFSPGSSCVRGDDNLSANAAGESFGGAYLSVG
DSATCTTAGAADPGSRGKPADACGVEASFVSGASSEPHYQCLRSRSASPD
WEGNGGSGGNDRANTIFHVSEGSKREPGENNVPSSPRDDGGRGGIHHHHQ
KGGGSASGAKDGGALMGREAGTVLYGLGLQ
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mRNA from alignment at H-elongata_contig57140:1037..3338-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57140.13167.1 ID=mRNA_H-elongata_contig57140.13167.1|Name=mRNA_H-elongata_contig57140.13167.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2302bp|location=Sequence derived from alignment at H-elongata_contig57140:1037..3338- (Himanthalia elongata Himel1 dioecious)
CTAACGATAACGCAGGGGTCCTCTGACGAGAGGAGTTCCAGACGCAAGAA
GGCGTGCGCGAGCATCGCGGCCGTCTTAGTCCGCAGGCAAGCGCGGCAAG
CCGTCCTCGCCCCCGCCCTGCTGCGCTGGCGTCGAGCGACCGCGCACTCT
TCTTTCCCGGGTTCCTCGGGAAAAGAATCGTCGAACGCATCTCTAGCCGA
CATAGGCGGGGAGGGAGGAACTCGCGGCGTGTGTACGGAGGGGTCAGGGA
GAAAGGGGCGAGAGGAAAAGCTGAGGAGAGGTGCGGTGGAAGTGACGGTA
GCGGTAAGCGCTGAACGGTCGGAGGCCGATGAGACGTTGGCCAGGCGGCA
CGCGGAGGTGCTCGAGAGCTACAGGTGTGTCTCTTTGTTTACTCATAGAT
GGACGGACAGCCAGACAACCAGAGACAGCTACACGAGATAGATACATTTG
TGTTTATTTACGTGTTATTTCGTCTGTCTCGCAACACAGAGTATCTCAAC
GGCAGTTTATTGAGCCTCGTCGCCGTGTCCAATCAATGCTAATGCTTCTG
AAAAAAAAAAAATCCGGCGTGCTGATGCCAGTTGTCTATTAAAGTATTAG
TAACGGTGCTGAATCGTGCCCACGTGGGTGGTGGTGTGTCGTCTATGAGA
AATACCAAAATCGTGGATCGTAAACCGGTTGGCGTGCTTCCGTCTGCCTG
TACCCTCCATCACAATTGAATTGAAAATCGAAGAGCGGCGCGCTCCGAGC
TGGCATCTGTCCATATGCGCACCCGGATGTGCGGCGCCCGAGTGCTGACG
GGGGTGCTATCCAAGTGGGCGGCGAGGCGGAGTGCGATGGCGTTCTGGCG
ACTGGCGGTGAGTGGTGGCGCGCGGCGCCTCACGAATGGCAGCAAATGAC
CCCCACCCCCTTCCCCAAAAATAAGGAAAATGAAGGAGCGTCGAATGAAA
GATGTCGCGTACGTACGTGCGCGTGGTGTTCGGGGTAATGTAGCGCGATG
ACACGAATGTTTCCTCGTAGCTAATGATGCCGTGTGCGCAGGGCGAAGCG
TTGCAGTGAAGAACATCGTCGTCGCCCCTACGTGATCCTCCCGCGATCCC
TCTCTCTCTCTCTTGTTTCTCTGCGACGCCGCCTCCGCCCGCCCGCCTGT
CTGCCTGTTTGTCCCTACCCCGCCGCCAGACGACTGCATGTGCCGTACGT
GACAACGCTGGTTGTGAGTCTTGTACCCGCTGCAGTGGCGATAAAAAATA
TGGAAGCGGCAGACCTGGTGGCAGCCAGGTCATCACCGGTCTCACGATTC
ACGCCCCGACGCCGGGAGGAGGGGGAGGAGGCGGCGGCGGCCCCTTATCT
TGGGGATCCCCGCTCGGTGAAAGTGGCGGTCACGAGGTCGAGCTCGATTT
CGACGTCGGGTGGGAAATGCGATCATCTCTCGCGCTGAGCAACGACACAG
ACGATCATCACCAGCACGACCACGAACGCCTCGACTGCTGCGGGCCGAAG
TCTGCGCAACGAAGGCCGAGACTGAGGCTGATGCCAAGGCCGCGCGACGA
GCGTGGGTCACAATATTTCTTTGCGGCGAACGCCTCTCCCCCGCCCACGG
TAGTGACGACGCTGCTGAGCTCGCCGGAAAGTGACGGCACCGCGGCCGCA
AATAATAACGGCAGGAGCGGGAGCGTCCGAAAATTGTTGGACTCGATGGA
TGGGGGTCGAGGGCAGAGAGATGATGAGGCAGGTCGTCGGACTCGGGCAG
CTGAGGGTAGAAATAGAAAGAATAGCTCTCCTTCGCCGCCGCTCCCGCCG
GTGCCATTGCCGCCGCCTTTCTCGCCGGGGTCCTCGTGCGTTCGCGGTGA
CGATAACCTTTCCGCGAACGCGGCGGGAGAGAGCTTTGGTGGTGCGTATT
TGAGCGTCGGGGATTCAGCGACTTGCACCACCGCTGGCGCGGCAGATCCT
GGAAGTCGGGGCAAACCGGCCGATGCGTGTGGCGTTGAAGCGAGCTTCGT
CAGCGGTGCTTCTAGCGAGCCACATTATCAGTGCCTTCGGTCACGGTCGG
CAAGCCCCGACTGGGAGGGCAACGGCGGCAGCGGTGGTAATGATAGAGCG
AACACAATATTTCACGTTTCCGAAGGGTCAAAGCGGGAACCCGGGGAAAA
TAACGTGCCTTCCTCTCCCCGCGATGACGGCGGCAGAGGCGGCATCCACC
ACCACCACCAGAAGGGCGGCGGGTCTGCAAGTGGCGCAAAAGACGGAGGC
GCTTTGATGGGGAGGGAAGCGGGGACGGTGTTGTATGGGTTGGGGTTGCA
AG
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Coding sequence (CDS) from alignment at H-elongata_contig57140:1037..3338-

>mRNA_H-elongata_contig57140.13167.1 ID=mRNA_H-elongata_contig57140.13167.1|Name=mRNA_H-elongata_contig57140.13167.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3180bp|location=Sequence derived from alignment at H-elongata_contig57140:1037..3338- (Himanthalia elongata Himel1 dioecious)
CTAACGATAACGCAGGGGTCCTCTGACGAGAGGAGTTCCAGACGCAAGAA
GGCGTGCGCGAGCATCGCGGCCGTCTTAGTCCGCAGGCAAGCGCGGCAAG
CCGTCCTCGCCCCCGCCCTGCTGCGCTGGCGTCGAGCGACCGCGCACTCT
TCTTTCCCGGGTTCCTCGGGAAAAGAATCGTCGAACGCATCTCTAGCCGA
CATAGGCGGGGAGGGAGGAACTCGCGGCGTGTGTACGGAGGGGTCAGGGA
GAAAGGGGCGAGAGGAAAAGCTGAGGAGAGGTGCGGTGGAAGTGACGGTA
GCGGTAAGCGCTGAACGGTCGGAGGCCGATGAGACGTTGGCCAGGCGGCA
CGCGGAGGTGCTCGAGAGCTACAGCTAACGATAACGCAGGGGTCCTCTGA
CGAGAGGAGTTCCAGACGCAAGAAGGCGTGCGCGAGCATCGCGGCCGTCT
TAGTCCGCAGGCAAGCGCGGCAAGCCGTCCTCGCCCCCGCCCTGCTGCGC
TGGCGTCGAGCGACCGCGCACTCTTCTTTCCCGGGTTCCTCGGGAAAAGA
ATCGTCGAACGCATCTCTAGCCGACATAGGCGGGGAGGGAGGAACTCGCG
GCGTGTGTACGGAGGGGTCAGGGAGAAAGGGGCGAGAGGAAAAGCTGAGG
AGAGGTGCGGTGGAAGTGACGGTAGCGGTAAGCGCTGAACGGTCGGAGGC
CGATGAGACGTTGGCCAGGCGGCACGCGGAGGTGCTCGAGAGCTACAGAG
CGGCGCGCTCCGAGCTGGCATCTGTCCATATGCGCACCCGGATGTGCGGC
AGCGGCGCGCTCCGAGCTGGCATCTGTCCATATGCGCACCCGGATGTGCG
GCTGGGCGGCGAGGCGGAGTGCGATGGCGTTCTGGCGACTGGCGTGGGCG
GCGAGGCGGAGTGCGATGGCGTTCTGGCGACTGGCGACGACTGCATGTGC
CGTACGTGACAACGCTGGTTGTGAGTCTTGTACCCGCTGCAGTGGCGATA
AAAAATATGGAAGCGGCAGACCTGGTGGCAGCCAGGTCATCACCGGTCTC
ACGATTCACGCCCCGACGCCGGGAGGAGGGGGAGGAGGCGGCGGCGGCCC
CTTATCTTGGGGATCCCCGCTCGGTGAAAGTGGCGGTCACGAGGTCGAGC
TCGATTTCGACGTCGGGTGGGAAATGCGATCATCTCTCGCGCTGAGCAAC
GACACAGACGATCATCACCAGCACGACCACGAACGCCTCGACTGCTGCGG
GCCGAAGTCTGCGCAACGAAGGCCGAGACTGAGGCTGATGCCAAGGCCGC
GCGACGAGCGTGGGTCACAATATTTCTTTGCGGCGAACGCCTCTCCCCCG
CCCACGGTAGTGACGACGCTGCTGAGCTCGCCGGAAAGTGACGGCACCGC
GGCCGCAAATAATAACGGCAGGAGCGGGAGCGTCCGAAAATTGTTGGACT
CGATGGATGGGGGTCGAGGGCAGAGAGATGATGAGGCAGGTCGTCGGACT
CGGGCAGCTGAGGGTAGAAATAGAAAGAATAGCTCTCCTTCGCCGCCGCT
CCCGCCGGTGCCATTGCCGCCGCCTTTCTCGCCGGGGTCCTCGTGCGTTC
GCGGTGACGATAACCTTTCCGCGAACGCGGCGGGAGAGAGCTTTGGTGGT
GCGTATTTGAGCGTCGGGGATTCAGCGACTTGCACCACCGCTGGCGCGGC
AGATCCTGGAAGTCGGGGCAAACCGGCCGATGCGTGTGGCGTTGAAGCGA
GCTTCGTCAGCGGTGCTTCTAGCGAGCCACATTATCAGTGCCTTCGGTCA
CGGTCGGCAAGCCCCGACTGGGAGGGCAACGGCGGCAGCGGTGGTAATGA
TAGAGCGAACACAATATTTCACGTTTCCGAAGGGTCAAAGCGGGAACCCG
GGGAAAATAACGTGCCTTCCTCTCCCCGCGATGACGGCGGCAGAGGCGGC
ATCCACCACCACCACCAGAAGGGCGGCGGGTCTGCAAGTGGCGCAAAAGA
CGGAGGCGCTTTGATGGGGAGGGAAGCGGGGACGGTGTTGTATGGGTTGG
GGTTGCAAACGACTGCATGTGCCGTACGTGACAACGCTGGTTGTGAGTCT
TGTACCCGCTGCAGTGGCGATAAAAAATATGGAAGCGGCAGACCTGGTGG
CAGCCAGGTCATCACCGGTCTCACGATTCACGCCCCGACGCCGGGAGGAG
GGGGAGGAGGCGGCGGCGGCCCCTTATCTTGGGGATCCCCGCTCGGTGAA
AGTGGCGGTCACGAGGTCGAGCTCGATTTCGACGTCGGGTGGGAAATGCG
ATCATCTCTCGCGCTGAGCAACGACACAGACGATCATCACCAGCACGACC
ACGAACGCCTCGACTGCTGCGGGCCGAAGTCTGCGCAACGAAGGCCGAGA
CTGAGGCTGATGCCAAGGCCGCGCGACGAGCGTGGGTCACAATATTTCTT
TGCGGCGAACGCCTCTCCCCCGCCCACGGTAGTGACGACGCTGCTGAGCT
CGCCGGAAAGTGACGGCACCGCGGCCGCAAATAATAACGGCAGGAGCGGG
AGCGTCCGAAAATTGTTGGACTCGATGGATGGGGGTCGAGGGCAGAGAGA
TGATGAGGCAGGTCGTCGGACTCGGGCAGCTGAGGGTAGAAATAGAAAGA
ATAGCTCTCCTTCGCCGCCGCTCCCGCCGGTGCCATTGCCGCCGCCTTTC
TCGCCGGGGTCCTCGTGCGTTCGCGGTGACGATAACCTTTCCGCGAACGC
GGCGGGAGAGAGCTTTGGTGGTGCGTATTTGAGCGTCGGGGATTCAGCGA
CTTGCACCACCGCTGGCGCGGCAGATCCTGGAAGTCGGGGCAAACCGGCC
GATGCGTGTGGCGTTGAAGCGAGCTTCGTCAGCGGTGCTTCTAGCGAGCC
ACATTATCAGTGCCTTCGGTCACGGTCGGCAAGCCCCGACTGGGAGGGCA
ACGGCGGCAGCGGTGGTAATGATAGAGCGAACACAATATTTCACGTTTCC
GAAGGGTCAAAGCGGGAACCCGGGGAAAATAACGTGCCTTCCTCTCCCCG
CGATGACGGCGGCAGAGGCGGCATCCACCACCACCACCAGAAGGGCGGCG
GGTCTGCAAGTGGCGCAAAAGACGGAGGCGCTTTGATGGGGAGGGAAGCG
GGGACGGTGTTGTATGGGTTGGGGTTGCAA
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