mRNA_H-elongata_contig57065.13159.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57065.13159.1
Unique NamemRNA_H-elongata_contig57065.13159.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57065.13159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57065contigH-elongata_contig57065:1858..3514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDnaJ domain
Ec32 orthologEc-24_001530.1
Exons5
Model size528
Cds size528
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57065.13159.1prot_H-elongata_contig57065.13159.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57065 1858..3514 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930926.7806976-CDS-H-elongata_contig57065:1857..19311622930926.7806976-CDS-H-elongata_contig57065:1857..1931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57065 1858..1931 +
1691679627.9921253-CDS-H-elongata_contig57065:1857..19311691679627.9921253-CDS-H-elongata_contig57065:1857..1931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57065 1858..1931 +
1622930926.8195505-CDS-H-elongata_contig57065:2187..22441622930926.8195505-CDS-H-elongata_contig57065:2187..2244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57065 2188..2244 +
1691679628.0005908-CDS-H-elongata_contig57065:2187..22441691679628.0005908-CDS-H-elongata_contig57065:2187..2244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57065 2188..2244 +
1622930926.839956-CDS-H-elongata_contig57065:2565..26761622930926.839956-CDS-H-elongata_contig57065:2565..2676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57065 2566..2676 +
1691679628.0090456-CDS-H-elongata_contig57065:2565..26761691679628.0090456-CDS-H-elongata_contig57065:2565..2676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57065 2566..2676 +
1622930926.8615503-CDS-H-elongata_contig57065:2832..29671622930926.8615503-CDS-H-elongata_contig57065:2832..2967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57065 2833..2967 +
1691679628.0179017-CDS-H-elongata_contig57065:2832..29671691679628.0179017-CDS-H-elongata_contig57065:2832..2967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57065 2833..2967 +
1622930926.8776553-CDS-H-elongata_contig57065:3363..35141622930926.8776553-CDS-H-elongata_contig57065:3363..3514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57065 3364..3514 +
1691679628.0267107-CDS-H-elongata_contig57065:3363..35141691679628.0267107-CDS-H-elongata_contig57065:3363..3514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57065 3364..3514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57065.13159.1

>prot_H-elongata_contig57065.13159.1 ID=prot_H-elongata_contig57065.13159.1|Name=mRNA_H-elongata_contig57065.13159.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp
RQGGQRRSGIPRGVKATDVFPAMLSCGYCRKLFRVEILNRHEERCPSKNP
ELFATPCVACGLQGPRCACWALRNGLLKETRPDPQEPLFRLFKASKNIRP
DKTTTIATSGDHRATNAMATTDKVTQFLGSWMAGKGLRRPALLVDEASDS
KGEKTPRETTNERWMRERDEWLFGR*
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mRNA from alignment at H-elongata_contig57065:1858..3514+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57065.13159.1 ID=mRNA_H-elongata_contig57065.13159.1|Name=mRNA_H-elongata_contig57065.13159.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1657bp|location=Sequence derived from alignment at H-elongata_contig57065:1858..3514+ (Himanthalia elongata Himel1 dioecious)
AGACAGGGTGGGCAAAGAAGAAGCGGTATCCCTAGAGGAGTAAAGGCAAC
GGATGTGTTTCCTGCCATGCTCAGGTGCGCCGCCTCTTCCCATTTCCTCT
CCCTCGACAAGTACAAGAAAAATACTCGTGCATTCGCTGCTGTAAAATTT
CGGTATTACACCCTTGCCAGAATGATCTGATACATACATCCAGAGACATG
GGGGGGGTAATCTTCTAATCCTCACCGAGGTTTGCGCAGATCGGGAAGGT
CTAAGCACAAATTCGTGTGTGTGTGTGTGTGTGTGTGCGCCTCTCTTCTG
CCACCTCGCCTCTTCGATGTTCCTCTACAGCTGTGGATACTGCCGGAAGT
TATTTCGTGTTGAGATTCTGAACAGGCACGAGGAAAGGTGATAAATTTGT
ATTAATTTGGTTTCATGTCTGCCAGCACTCAGATAGATCACCCTTAGTCA
GGCAGACGTCGATTCGGTGGGAACGAAGCGCCAGAGATCGAAGAGGGGTT
GAGAAGAGCGGGATGAAAGGGCAGAGAAGTGTTGCCCTAAGAGCGGAGAC
AGACGAGTAGTTTGAGTAGGACCGAAATCCATTCGCGAGAAAATATGTTG
CTTTTTGTGCACGAAATTGCGCGTTCGGAGCTCTCCTTCGTTTATGGCAT
CCTACGCGAAGCCTACCGTGCCATACCATCCGACAGCAGCCATATTATAC
CTGCACAGATGTCCGTCGAAAAATCCGGAATTGTTCGCCACACCGTGCGT
GGCGTGCGGCCTCCAAGGGCCTCGATGTGCGTGCTGGGCACTGCGTAACG
GGTTGCTCAAGGAAACCAGGTCAATCTTCTCATCCAGAAAAAAATGTAAT
TTTTGTTCCGACGGTCGCAGGCAATATAACAGGTAGCGTCGAGATCCAGC
TCATGCTTCCTTAGCTTCGTGACGTTGTTCTTGAAGGTTTCCTTTCCTCG
CAATGTCTGTGCCTCGTCCATCTAGACCAGACCCACAGGAACCACTGTTT
AGGCTCTTCAAGGCTAGCAAGAACATTAGACCAGACAAGACCACCACTAT
TGCCACGAGCGGAGACCACAGGGCCACAAACGCCATGGCTACAACTGATA
AGGTGACTCAGTTATTCCCGCCGTGTTCCTGTCTCAAACGCACCGTCCCC
CGACTCCCCCATTTCACTTCTCGGGGGATTTCCTTCTTTTTTATCTCGAT
CTATTTTTTACGCTCTAACTTCAAGGCAGCTACCCAGAGTGAGAGCACGT
TATTTTATATTTTCGTTGATCGTTCTCGTGAAATTTGGCACTCTCAACGA
GCTCTCGATGCTATTTTCACGTAAGAGCGATAACTAAGAAATGCGGAGAT
CACCTCGTATTTGCAAATCGCGGAATTGATTAAAAAATGAACGCACACCT
GGGTTTTCCTCTCCAACGTGCTTCCGCGTAATCCCCCGCATCTTGAAGGA
TGCCCTCAATGTCCACATATATTTACGTGGTACTCCCATTCTCAGACAGG
AGTAAGGTTTCTAGGAAGTTGGATGGCGGGCAAGGGACTCCGGCGACCAG
CTCTATTGGTAGATGAAGCGAGTGATTCGAAAGGCGAGAAAACGCCGAGG
GAGACTACCAACGAGCGCTGGATGAGGGAAAGAGACGAATGGCTCTTCGG
GAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig57065:1858..3514+

>mRNA_H-elongata_contig57065.13159.1 ID=mRNA_H-elongata_contig57065.13159.1|Name=mRNA_H-elongata_contig57065.13159.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1056bp|location=Sequence derived from alignment at H-elongata_contig57065:1858..3514+ (Himanthalia elongata Himel1 dioecious)
AGACAGGGTGGGCAAAGAAGAAGCGGTATCCCTAGAGGAGTAAAGGCAAC
GGATGTGTTTCCTGCCATGCTCAGAGACAGGGTGGGCAAAGAAGAAGCGG
TATCCCTAGAGGAGTAAAGGCAACGGATGTGTTTCCTGCCATGCTCAGCT
GTGGATACTGCCGGAAGTTATTTCGTGTTGAGATTCTGAACAGGCACGAG
GAAAGCTGTGGATACTGCCGGAAGTTATTTCGTGTTGAGATTCTGAACAG
GCACGAGGAAAGATGTCCGTCGAAAAATCCGGAATTGTTCGCCACACCGT
GCGTGGCGTGCGGCCTCCAAGGGCCTCGATGTGCGTGCTGGGCACTGCGT
AACGGGTTGCTCAAGGAAACCAGATGTCCGTCGAAAAATCCGGAATTGTT
CGCCACACCGTGCGTGGCGTGCGGCCTCCAAGGGCCTCGATGTGCGTGCT
GGGCACTGCGTAACGGGTTGCTCAAGGAAACCAGACCAGACCCACAGGAA
CCACTGTTTAGGCTCTTCAAGGCTAGCAAGAACATTAGACCAGACAAGAC
CACCACTATTGCCACGAGCGGAGACCACAGGGCCACAAACGCCATGGCTA
CAACTGATAAGGTGACTCAACCAGACCCACAGGAACCACTGTTTAGGCTC
TTCAAGGCTAGCAAGAACATTAGACCAGACAAGACCACCACTATTGCCAC
GAGCGGAGACCACAGGGCCACAAACGCCATGGCTACAACTGATAAGGTGA
CTCAGTTTCTAGGAAGTTGGATGGCGGGCAAGGGACTCCGGCGACCAGCT
CTATTGGTAGATGAAGCGAGTGATTCGAAAGGCGAGAAAACGCCGAGGGA
GACTACCAACGAGCGCTGGATGAGGGAAAGAGACGAATGGCTCTTCGGGA
GGTGAGTTTCTAGGAAGTTGGATGGCGGGCAAGGGACTCCGGCGACCAGC
TCTATTGGTAGATGAAGCGAGTGATTCGAAAGGCGAGAAAACGCCGAGGG
AGACTACCAACGAGCGCTGGATGAGGGAAAGAGACGAATGGCTCTTCGGG
AGGTGA
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