mRNA_H-elongata_contig57059.13158.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57059.13158.1
Unique NamemRNA_H-elongata_contig57059.13158.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig57059.13158.1 vs. uniprot
Match: A0A2I0X387_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0X387_9ASPA)

HSP 1 Score: 51.2 bits (121), Expect = 1.590e-5
Identity = 32/81 (39.51%), Postives = 42/81 (51.85%), Query Frame = 1 
Query:   16 WVCDTSASQHFSNDSAHLINFREY--QKFI----GKRFPIEGYGDLILHLQSEGEVVHLKLRNVAHVPQLSHNLTSLRAVT 240
            W+ D+ AS H ++D + L N   Y  Q  +    G   PI+  G  IL L        LKLRN+ HVP LSHNL S+  +T
Sbjct:  326 WILDSGASSHLTSDVSTLQNPTPYSGQDSVSIANGNNLPIQNSGQGILPLPDSYR--KLKLRNILHVPSLSHNLLSIAKLT 404
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BLAST of mRNA_H-elongata_contig57059.13158.1 vs. uniprot
Match: A0A2I0WP19_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WP19_9ASPA)

HSP 1 Score: 50.1 bits (118), Expect = 4.060e-5
Identity = 31/81 (38.27%), Postives = 41/81 (50.62%), Query Frame = 1 
Query:   16 WVCDTSASQHFSNDSAHLINFREYQKFI------GKRFPIEGYGDLILHLQSEGEVVHLKLRNVAHVPQLSHNLTSLRAVT 240
            W+ D+ AS H ++D+A+L N   Y  +       G   PI   G+ IL L        L LR V HVP LSHNL S+  +T
Sbjct:  320 WILDSGASSHLTSDAANLQNSTLYNGYDSVSVANGSTLPIHNSGNGILPLPETHS--KLCLREVLHVPSLSHNLLSVSRLT 398
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57059.13158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2I0X387_9ASPA1.590e-539.51Retrovirus-related Pol polyprotein from transposon... [more]
A0A2I0WP19_9ASPA4.060e-538.27Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57059contigH-elongata_contig57059:256..516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930926.7166822-CDS-H-elongata_contig57059:255..4061622930926.7166822-CDS-H-elongata_contig57059:255..406Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57059 256..406 -
1691679627.9747686-CDS-H-elongata_contig57059:255..4061691679627.9747686-CDS-H-elongata_contig57059:255..406Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57059 256..406 -
1622930926.7334583-CDS-H-elongata_contig57059:418..5161622930926.7334583-CDS-H-elongata_contig57059:418..516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57059 419..516 -
1691679627.9832892-CDS-H-elongata_contig57059:418..5161691679627.9832892-CDS-H-elongata_contig57059:418..516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57059 419..516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57059.13158.1prot_H-elongata_contig57059.13158.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57059 256..516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57059.13158.1

>prot_H-elongata_contig57059.13158.1 ID=prot_H-elongata_contig57059.13158.1|Name=mRNA_H-elongata_contig57059.13158.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
VGGERWVCDTSASQHFSNDSAHLINFREYQKFIGKRFPIEGYGDLILHLQ
SEGEVVHLKLRNVAHVPQLSHNLTSLRAVTDSG
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mRNA from alignment at H-elongata_contig57059:256..516-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57059.13158.1 ID=mRNA_H-elongata_contig57059.13158.1|Name=mRNA_H-elongata_contig57059.13158.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig57059:256..516- (Himanthalia elongata Himel1 dioecious)
GTTGGGGGCGAGCGTTGGGTGTGTGACACCAGCGCTTCGCAGCATTTTAG
CAATGACTCTGCGCACTTGATCAATTTCCGTGAATACCAAAAGTTTATGT
GAACAGCTAGCGGGAAGAGATTCCCGATCGAGGGTTACGGTGATCTTATC
TTGCACCTTCAGTCTGAGGGAGAGGTGGTACATCTCAAGCTTCGCAATGT
AGCGCATGTGCCACAACTTTCTCACAATCTGACATCACTCAGAGCAGTAA
CCGACAGTGGA
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Coding sequence (CDS) from alignment at H-elongata_contig57059:256..516-

>mRNA_H-elongata_contig57059.13158.1 ID=mRNA_H-elongata_contig57059.13158.1|Name=mRNA_H-elongata_contig57059.13158.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig57059:256..516- (Himanthalia elongata Himel1 dioecious)
GTTGGGGGCGAGCGTTGGGTGTGTGACACCAGCGCTTCGCAGCATTTTAG
CAATGACTCTGCGCACTTGATCAATTTCCGTGAATACCAAAAGTTTATGT
TGGGGGCGAGCGTTGGGTGTGTGACACCAGCGCTTCGCAGCATTTTAGCA
ATGACTCTGCGCACTTGATCAATTTCCGTGAATACCAAAAGTTTATCGGG
AAGAGATTCCCGATCGAGGGTTACGGTGATCTTATCTTGCACCTTCAGTC
TGAGGGAGAGGTGGTACATCTCAAGCTTCGCAATGTAGCGCATGTGCCAC
AACTTTCTCACAATCTGACATCACTCAGAGCAGTAACCGACAGTGGACGG
GAAGAGATTCCCGATCGAGGGTTACGGTGATCTTATCTTGCACCTTCAGT
CTGAGGGAGAGGTGGTACATCTCAAGCTTCGCAATGTAGCGCATGTGCCA
CAACTTTCTCACAATCTGACATCACTCAGAGCAGTAACCGACAGTGGA
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