prot_H-elongata_contig57059.13158.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig57059.13158.1
Unique Nameprot_H-elongata_contig57059.13158.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length83
Homology
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BLAST of mRNA_H-elongata_contig57059.13158.1 vs. uniprot
Match: A0A2I0X387_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0X387_9ASPA)

HSP 1 Score: 51.2 bits (121), Expect = 1.590e-5
Identity = 32/81 (39.51%), Postives = 42/81 (51.85%), Query Frame = 0 
Query:    6 WVCDTSASQHFSNDSAHLINFREY--QKFI----GKRFPIEGYGDLILHLQSEGEVVHLKLRNVAHVPQLSHNLTSLRAVT 80
            W+ D+ AS H ++D + L N   Y  Q  +    G   PI+  G  IL L        LKLRN+ HVP LSHNL S+  +T
Sbjct:  326 WILDSGASSHLTSDVSTLQNPTPYSGQDSVSIANGNNLPIQNSGQGILPLPDSYR--KLKLRNILHVPSLSHNLLSIAKLT 404
[Close]
BLAST of mRNA_H-elongata_contig57059.13158.1 vs. uniprot
Match: A0A2I0WP19_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WP19_9ASPA)

HSP 1 Score: 50.1 bits (118), Expect = 4.060e-5
Identity = 31/81 (38.27%), Postives = 41/81 (50.62%), Query Frame = 0 
Query:    6 WVCDTSASQHFSNDSAHLINFREYQKFI------GKRFPIEGYGDLILHLQSEGEVVHLKLRNVAHVPQLSHNLTSLRAVT 80
            W+ D+ AS H ++D+A+L N   Y  +       G   PI   G+ IL L        L LR V HVP LSHNL S+  +T
Sbjct:  320 WILDSGASSHLTSDAANLQNSTLYNGYDSVSVANGSTLPIHNSGNGILPLPETHS--KLCLREVLHVPSLSHNLLSVSRLT 398
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57059.13158.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2I0X387_9ASPA1.590e-539.51Retrovirus-related Pol polyprotein from transposon... [more]
A0A2I0WP19_9ASPA4.060e-538.27Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57059contigH-elongata_contig57059:256..516 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57059.13158.1mRNA_H-elongata_contig57059.13158.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig57059 256..516 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig57059.13158.1 ID=prot_H-elongata_contig57059.13158.1|Name=mRNA_H-elongata_contig57059.13158.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
VGGERWVCDTSASQHFSNDSAHLINFREYQKFIGKRFPIEGYGDLILHLQ
SEGEVVHLKLRNVAHVPQLSHNLTSLRAVTDSG
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