mRNA_H-elongata_contig5704.13156.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5704.13156.1
Unique NamemRNA_H-elongata_contig5704.13156.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5704.13156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5704contigH-elongata_contig5704:5470..5840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size373
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930926.327019-CDS-H-elongata_contig5704:5469..57691622930926.327019-CDS-H-elongata_contig5704:5469..5769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5704 5470..5769 +
1691679627.8281987-CDS-H-elongata_contig5704:5469..57691691679627.8281987-CDS-H-elongata_contig5704:5469..5769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5704 5470..5769 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930926.3445477-UTR-H-elongata_contig5704:5769..58401622930926.3445477-UTR-H-elongata_contig5704:5769..5840Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5704 5770..5840 +
1691679627.8363633-UTR-H-elongata_contig5704:5769..58401691679627.8363633-UTR-H-elongata_contig5704:5769..5840Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5704 5770..5840 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5704.13156.1prot_H-elongata_contig5704.13156.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5704 5470..5769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5704.13156.1

>prot_H-elongata_contig5704.13156.1 ID=prot_H-elongata_contig5704.13156.1|Name=mRNA_H-elongata_contig5704.13156.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
RIDSFDCIHGRPLRNSHFLSYRSRLRRCERRGHNETLPRRNGDRRAFGGY
WADLANTPRISLFVHYVLNRLLLPLLLRIVLYFNLQARLVKLAVLAYNF*
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mRNA from alignment at H-elongata_contig5704:5470..5840+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5704.13156.1 ID=mRNA_H-elongata_contig5704.13156.1|Name=mRNA_H-elongata_contig5704.13156.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=371bp|location=Sequence derived from alignment at H-elongata_contig5704:5470..5840+ (Himanthalia elongata Himel1 dioecious)
AGGATCGACAGCTTCGATTGTATTCACGGACGCCCACTTCGAAACAGCCA
CTTTCTCAGCTATCGGAGTCGCCTCCGTCGCTGCGAACGCCGGGGTCACA
ACGAAACCCTCCCCCGAAGAAATGGCGACCGAAGAGCTTTCGGGGGCTAT
TGGGCCGATCTCGCCAACACCCCGAGGATCTCGCTTTTCGTCCACTACGT
CCTTAACCGTTTGCTGTTGCCGCTGCTCTTGAGAATCGTGCTTTACTTCA
ACCTTCAAGCCCGTCTCGTGAAGCTTGCCGTTTTGGCTTACAACTTCTGA
GGCATTCGAGGTGACGTCGGCCTCAATATCCTCCCGCTGATGCTGCTTTT
GCTCCTCGTGACTATCGCAAT
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Coding sequence (CDS) from alignment at H-elongata_contig5704:5470..5840+

>mRNA_H-elongata_contig5704.13156.1 ID=mRNA_H-elongata_contig5704.13156.1|Name=mRNA_H-elongata_contig5704.13156.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig5704:5470..5840+ (Himanthalia elongata Himel1 dioecious)
AGGATCGACAGCTTCGATTGTATTCACGGACGCCCACTTCGAAACAGCCA
CTTTCTCAGCTATCGGAGTCGCCTCCGTCGCTGCGAACGCCGGGGTCACA
ACGAAACCCTCCCCCGAAGAAATGGCGACCGAAGAGCTTTCGGGGGCTAT
TGGGCCGATCTCGCCAACACCCCGAGGATCTCGCTTTTCGTCCACTACGT
CCTTAACCGTTTGCTGTTGCCGCTGCTCTTGAGAATCGTGCTTTACTTCA
ACCTTCAAGCCCGTCTCGTGAAGCTTGCCGTTTTGGCTTACAACTTCTGA
AGGATCGACAGCTTCGATTGTATTCACGGACGCCCACTTCGAAACAGCCA
CTTTCTCAGCTATCGGAGTCGCCTCCGTCGCTGCGAACGCCGGGGTCACA
ACGAAACCCTCCCCCGAAGAAATGGCGACCGAAGAGCTTTCGGGGGCTAT
TGGGCCGATCTCGCCAACACCCCGAGGATCTCGCTTTTCGTCCACTACGT
CCTTAACCGTTTGCTGTTGCCGCTGCTCTTGAGAATCGTGCTTTACTTCA
ACCTTCAAGCCCGTCTCGTGAAGCTTGCCGTTTTGGCTTACAACTTCTGA
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