mRNA_H-elongata_contig11684.1315.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11684.1315.1
Unique NamemRNA_H-elongata_contig11684.1315.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11684.1315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11684contigH-elongata_contig11684:2017..4246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size392
Cds size390
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11684.1315.1prot_H-elongata_contig11684.1315.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11684 2017..4244 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929679.39463-CDS-H-elongata_contig11684:2016..21321622929679.39463-CDS-H-elongata_contig11684:2016..2132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11684 2017..2132 +
1691679116.7322567-CDS-H-elongata_contig11684:2016..21321691679116.7322567-CDS-H-elongata_contig11684:2016..2132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11684 2017..2132 +
1622929679.406691-CDS-H-elongata_contig11684:2793..29691622929679.406691-CDS-H-elongata_contig11684:2793..2969Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11684 2794..2969 +
1691679116.7396681-CDS-H-elongata_contig11684:2793..29691691679116.7396681-CDS-H-elongata_contig11684:2793..2969Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11684 2794..2969 +
1622929679.4231012-CDS-H-elongata_contig11684:4146..42441622929679.4231012-CDS-H-elongata_contig11684:4146..4244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11684 4147..4244 +
1691679116.7476528-CDS-H-elongata_contig11684:4146..42441691679116.7476528-CDS-H-elongata_contig11684:4146..4244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11684 4147..4244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11684.1315.1

>prot_H-elongata_contig11684.1315.1 ID=prot_H-elongata_contig11684.1315.1|Name=mRNA_H-elongata_contig11684.1315.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
PIGFGGFDTRNGLPQSVYVDNAKQRLRLMEDCPHEMEGSYVLLFACNTLE
RYPRAEIWHSMTSQDGKPIPVNLCPLTAIKMVPAATSGIFAVSPPGTGPD
CFRHYEMILEGNIALVPDDKSLRSFMGGLP
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mRNA from alignment at H-elongata_contig11684:2017..4246+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11684.1315.1 ID=mRNA_H-elongata_contig11684.1315.1|Name=mRNA_H-elongata_contig11684.1315.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2230bp|location=Sequence derived from alignment at H-elongata_contig11684:2017..4246+ (Himanthalia elongata Himel1 dioecious)
CCGATCGGCTTCGGCGGCTTCGACACGCGCAACGGATTGCCGCAGTCAGT
ATACGTAGACAATGCGAAGCAACGACTGAGACTCATGGAAGACTGTCCGC
ACGAGATGGAAGGCAGGTGCGTGCGTGCAATATTTCTCTGCTCAGCGCGC
AAACAAAATCCAATCCGTGATTGGGTGAGAGAAAACACCACCCGTTGTTG
CATCAGCGGAAACGTTTCTTGGGCGATCTAAATGGATTACCCTAGTTGTT
TGCGTTACGCGGCGGACTCGTTGGTTATTTTCTTCTTACGACCTAATACA
ACAGGTTACAACGTTCGTATGGAGCAAATGTGGTCCATATAACTAATGTG
GATTAGCATCCGAAAAGTGCAGGATTGATGCCCATGTGCCCACGTCCCCG
GAGCGCTTGGTTTAGGGGGATGTTGTCAATGTTCTGATTTGCTATGGAAT
AAAACATGTTTTTAAGGTGGCACTCAGACGTTTGGAGACGGCAGCCGATG
GTGATTGATTAATGTGAACGTGCTCTCGTGTTTCGGGGAAGTCCAGGGGT
CTCTTGAAAATCTTGGCATACGCAACACAGCCCACCGTAATTATACTGGT
ACATTATCCAGTCCCTCTGACGTGAGACCAATGCTATATTCTTTGCTTAT
TTTCTCGTCGTTTGTCCGTTCGTCTGTCCACGAACGCCCAATACCGGCCA
TTTGGAACACGACACGCCGGTACTATTTTGCCACCTTTCGGGATGATGTC
GGTTTTTTATGGGTGTGCTATCCGAAGCTACGTCCTTCTCTTTGCTTGCA
ACACGTTGGAACGCTACCCTCGCGCGGAAATATGGCACAGCATGACGTCG
CAAGACGGGAAGCCTATTCCAGTCAACTTATGTCCACTGACCGCCATCAA
GATGGTGCCTGCTGCTACCTCGGGAATTTTTGCCGTCAGTCCCCCCGGAA
CAGGTACGCATCTCGCGGAACGAGAGGAGAGGGTGGTGGAGTGGGGTACA
GAAGGGTATTTATTTGTCCAGGCTTTGGGTGGATAGTCTCTAAATTTTTG
TTGATGTGTGAAGTGCGCTGTCATGAACCTCATGCTCTGCAACTACGAGT
GTCTACAGATGACCAAAACAGAGTCGTTCAGGAGTCTTTGCTCTTGAGTT
TCACGCTACTTGCAACCAGGCTCTACCAATTCACCGCCCAGATCAGTTAA
ATTTTGAAGGTTGACCAAGAATTGTGGCACCAGTGTTTTCCCGCTTTCTT
GAAAGCGGAGCGGGAAGGTAGTTTACATATTTAAACCGGGCAGCGGAAGG
AGCGGAGTGCGCCCCGCCATCGCTGGGGGTATTCGGCTCAACTCGTCCCA
CAGTTGTAATGCCGTAACCGATCTCTATAGTCGGTGTGCCTTGTAGAGCG
CTACGACCATACCAGTGAACGACCCAAGGTGACAAATGAGCTCTCCGTTG
CGATGTTACGTCCATTGACGAACTTTGTCCGAAGAGAGATAAATTATCGT
ATGGTGGATCCGGCGCTAGTGGGCACGGTGCGCAAATATCCACGGTTGGG
TCACGCTGGCGGCAGAAGCCTGACCGTTCAAGTTACCACCGCCGCATTCG
CTACAAACGGCGCAGTAGCGGCTCGGAGAACTTAAGTATCAACTCGCTAG
CTTAGGCTCGGTTTCGATAGTGGTGCAAGTTCGATGTTGCAGTGCCAGTC
AGGTTGCTGATCGGTGAATCTGGTCGTGATATGGTCGTGATAACGTATAG
CGCCTACCTCTGCGTAAGTCTATCTGCGCCATCACCTGGTGTGTCCGTGT
TGGCTGCAGCAATAGGTAAATCGACGTTCGGTGACGATGGACGGGATGTA
CAACAATATTCTGTCATGGAACAAATATTACAGTCATCGCAGCCTGTGAA
GCGACAGCGTTCGAGTGGCAATGACAGACGACGATGCGGCCTTTTTCTTT
TTGCGATTTGAGGCGCTTCTACAATTCGAATGTTCGTCTAAATTTGGCAA
CGGTCTCATGCATTGATGAGCTCGAGTGATATATCGTAAAAGTCGCTGGA
GAGACCGGCGTCGACTTGTGAGTGGGGAAAGATGCTCATAATTCTCGGTT
TTCCGTCGATATTCCCCTCAAACTCCCCAGGCCCGGACTGCTTCAGGCAC
TATGAAATGATATTGGAGGGTAATATTGCATTAGTCCCCGACGACAAAAG
CCTCCGCTCCTTCATGGGAGGACTGCCGGT
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Coding sequence (CDS) from alignment at H-elongata_contig11684:2017..4246+

>mRNA_H-elongata_contig11684.1315.1 ID=mRNA_H-elongata_contig11684.1315.1|Name=mRNA_H-elongata_contig11684.1315.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig11684:2017..4246+ (Himanthalia elongata Himel1 dioecious)
CCGATCGGCTTCGGCGGCTTCGACACGCGCAACGGATTGCCGCAGTCAGT
ATACGTAGACAATGCGAAGCAACGACTGAGACTCATGGAAGACTGTCCGC
ACGAGATGGAAGGCAGCCGATCGGCTTCGGCGGCTTCGACACGCGCAACG
GATTGCCGCAGTCAGTATACGTAGACAATGCGAAGCAACGACTGAGACTC
ATGGAAGACTGTCCGCACGAGATGGAAGGCAGCTACGTCCTTCTCTTTGC
TTGCAACACGTTGGAACGCTACCCTCGCGCGGAAATATGGCACAGCATGA
CGTCGCAAGACGGGAAGCCTATTCCAGTCAACTTATGTCCACTGACCGCC
ATCAAGATGGTGCCTGCTGCTACCTCGGGAATTTTTGCCGTCAGTCCCCC
CGGAACAGCTACGTCCTTCTCTTTGCTTGCAACACGTTGGAACGCTACCC
TCGCGCGGAAATATGGCACAGCATGACGTCGCAAGACGGGAAGCCTATTC
CAGTCAACTTATGTCCACTGACCGCCATCAAGATGGTGCCTGCTGCTACC
TCGGGAATTTTTGCCGTCAGTCCCCCCGGAACAGGCCCGGACTGCTTCAG
GCACTATGAAATGATATTGGAGGGTAATATTGCATTAGTCCCCGACGACA
AAAGCCTCCGCTCCTTCATGGGAGGACTGCCGGCCCGGACTGCTTCAGGC
ACTATGAAATGATATTGGAGGGTAATATTGCATTAGTCCCCGACGACAAA
AGCCTCCGCTCCTTCATGGGAGGACTGCCG
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