mRNA_H-elongata_contig56945.13149.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56945.13149.1
Unique NamemRNA_H-elongata_contig56945.13149.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig56945.13149.1 vs. uniprot
Match: D8LSH6_ECTSI (Cysteine desulfurase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSH6_ECTSI)

HSP 1 Score: 295 bits (755), Expect = 1.450e-96
Identity = 143/160 (89.38%), Postives = 154/160 (96.25%), Query Frame = 1 
Query:   34 MQKDKRYTPANQVPEEVMSNVGSDEVFSPGFSIKGQAMAGRASYLDMQATTPLDPRALDAMMAYQLESYGNPHSRTHAYGWDTEAAVEKAREQVANLIGASPKEIIFTSGATESNNMSIKGVARFYKGRKKHIITTQTEHKCVLDSCRAMEQEGYEVRTL 513
            M++DKRYTPAN+VP+EV+S +GSDE+FSPGFSIKGQA+AGRASYLDMQATTP+DPRALDAMM YQLE YGNPHSRTHAYGW++EA VEKAREQVANLIGASPKEIIFTSGATESNNMSIKGVARFYKGRKKHIITTQTEHKCVLDSCRAMEQEGYEV  L
Sbjct:    1 MKQDKRYTPANKVPDEVLSAMGSDEIFSPGFSIKGQALAGRASYLDMQATTPMDPRALDAMMEYQLERYGNPHSRTHAYGWESEAVVEKAREQVANLIGASPKEIIFTSGATESNNMSIKGVARFYKGRKKHIITTQTEHKCVLDSCRAMEQEGYEVTYL 160
[Close]
BLAST of mRNA_H-elongata_contig56945.13149.1 vs. uniprot
Match: A0A835YNJ7_9STRA (Cysteine desulfurase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNJ7_9STRA)

HSP 1 Score: 254 bits (648), Expect = 1.930e-80
Identity = 121/160 (75.62%), Postives = 139/160 (86.88%), Query Frame = 1 
Query:   34 MQKDKRYTPANQVPEEVMSNVGSDEVFSPGFSIKGQAMAGRASYLDMQATTPLDPRALDAMMAYQLESYGNPHSRTHAYGWDTEAAVEKAREQVANLIGASPKEIIFTSGATESNNMSIKGVARFYKGRKKHIITTQTEHKCVLDSCRAMEQEGYEVRTL 513
            M+ DKRY P  +VPE V+ N+ +D VFSPGFSIKG++ AGRASYLDMQATTPLDPRALDAM+ + +  YGNPHSRTH+YGW+ E AVE AR Q+A+LIGASP+EIIFTSGATESNNMS+KGVARFY  RKKH+ITTQTEHKCVLDSCRAME+EGYEV  L
Sbjct:    1 MKADKRYEPVTEVPEVVLRNMSADTVFSPGFSIKGRSKAGRASYLDMQATTPLDPRALDAMLPWMMGGYGNPHSRTHSYGWEAEGAVEVARGQIADLIGASPREIIFTSGATESNNMSVKGVARFYASRKKHLITTQTEHKCVLDSCRAMEKEGYEVTYL 160
[Close]
BLAST of mRNA_H-elongata_contig56945.13149.1 vs. uniprot
Match: A0A1W0A898_9STRA (Cysteine desulfurase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A898_9STRA)

HSP 1 Score: 243 bits (619), Expect = 7.940e-76
Identity = 116/157 (73.89%), Postives = 129/157 (82.17%), Query Frame = 1 
Query:   43 DKRYTPANQVPEEVMSNVGSDEVFSPGFSIKGQAMAGRASYLDMQATTPLDPRALDAMMAYQLESYGNPHSRTHAYGWDTEAAVEKAREQVANLIGASPKEIIFTSGATESNNMSIKGVARFYKGRKKHIITTQTEHKCVLDSCRAMEQEGYEVRTL 513
            DKRY P N VPE ++ N  SDEVFSPGFSIKGQ+  GRA+YLD+QAT+PLDPR LD MM Y   +YGNPHSRTHAYGWD + AVE AREQVA LIGA+ KE++FTSGATESNN  IKG+ARFY  +KKHIITTQ EHKCVLDSCRAME EGYEV  L
Sbjct:   26 DKRYKPVNDVPESIVQNAHSDEVFSPGFSIKGQSAPGRAAYLDVQATSPLDPRVLDKMMPYMTHNYGNPHSRTHAYGWDADKAVEHAREQVAQLIGANLKEVMFTSGATESNNTIIKGIARFYGAKKKHIITTQIEHKCVLDSCRAMESEGYEVTYL 182
[Close]
BLAST of mRNA_H-elongata_contig56945.13149.1 vs. uniprot
Match: A0A067BY07_SAPPC (Cysteine desulfurase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BY07_SAPPC)

HSP 1 Score: 241 bits (614), Expect = 4.470e-75
Identity = 114/157 (72.61%), Postives = 132/157 (84.08%), Query Frame = 1 
Query:   43 DKRYTPANQVPEEVMSNVGSDEVFSPGFSIKGQAMAGRASYLDMQATTPLDPRALDAMMAYQLESYGNPHSRTHAYGWDTEAAVEKAREQVANLIGASPKEIIFTSGATESNNMSIKGVARFYKGRKKHIITTQTEHKCVLDSCRAMEQEGYEVRTL 513
            DKRY P N+VPE V++N  SD+VFSPGFSIKGQ+ +GRA+YLD+QAT+PLDPR LD MM Y   +YGNPHSRTHA+GWD + AVE AREQVA+LI A+ KE++FTSGATESNN  IKG+ARFY  +KKHIITTQ EHKCVLDSCRAME EGYEV  L
Sbjct:   25 DKRYKPVNEVPEAVIANAHSDQVFSPGFSIKGQSSSGRAAYLDVQATSPLDPRVLDKMMPYMTHNYGNPHSRTHAFGWDADKAVEHAREQVASLIAANAKEVMFTSGATESNNTIIKGIARFYGAKKKHIITTQIEHKCVLDSCRAMESEGYEVTYL 181
[Close]
BLAST of mRNA_H-elongata_contig56945.13149.1 vs. uniprot
Match: A0A812YIM4_9DINO (Cysteine desulfurase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812YIM4_9DINO)

HSP 1 Score: 239 bits (610), Expect = 9.720e-75
Identity = 112/160 (70.00%), Postives = 136/160 (85.00%), Query Frame = 1 
Query:   34 MQKDKRYTPANQVPEEVMSNVGSDEVFSPGFSIKGQAMAGRASYLDMQATTPLDPRALDAMMAYQLESYGNPHSRTHAYGWDTEAAVEKAREQVANLIGASPKEIIFTSGATESNNMSIKGVARFYKGRKKHIITTQTEHKCVLDSCRAMEQEGYEVRTL 513
            M KDKRY+ + +VPE V+S + +D V SPGFSIKGQA+AGR +YLDMQATTPLDPR LDAMM +  E YGNPHSRTH++GW+ E AVE AR+QVA+LIGA+PKE++FTSGATESNN +IKG+ARFY+ RKKH+ITT TEHKCVLDSCR +E EG++V  L
Sbjct:    1 MAKDKRYSASGKVPESVLSGMQADTVHSPGFSIKGQALAGRPAYLDMQATTPLDPRVLDAMMPFMTEQYGNPHSRTHSFGWEAEQAVEVARKQVADLIGANPKEVVFTSGATESNNAAIKGIARFYRNRKKHVITTTTEHKCVLDSCRWLEAEGWDVTYL 160
[Close]
BLAST of mRNA_H-elongata_contig56945.13149.1 vs. uniprot
Match: A0A6G0XGN9_9STRA (Cysteine desulfurase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XGN9_9STRA)

HSP 1 Score: 237 bits (604), Expect = 1.520e-73
Identity = 112/157 (71.34%), Postives = 129/157 (82.17%), Query Frame = 1 
Query:   43 DKRYTPANQVPEEVMSNVGSDEVFSPGFSIKGQAMAGRASYLDMQATTPLDPRALDAMMAYQLESYGNPHSRTHAYGWDTEAAVEKAREQVANLIGASPKEIIFTSGATESNNMSIKGVARFYKGRKKHIITTQTEHKCVLDSCRAMEQEGYEVRTL 513
            DKRY P N+VPE V+ N  S+EVFSPGFSIKGQ   GRA+YLD+QAT PLDPR LD MM++   SYGNPHSRTHA+GWD++ AVE AR QVA+LIGA PKEI+FTSGATESNN  IKG+  FYK +KKHIITTQ EHKCVLDSCRA+E EG+E+  L
Sbjct:   28 DKRYKPVNEVPEAVLKNAHSEEVFSPGFSIKGQHARGRAAYLDVQATAPLDPRVLDKMMSHMTHSYGNPHSRTHAFGWDSDNAVEHARGQVASLIGADPKEIMFTSGATESNNTIIKGIGHFYKSKKKHIITTQIEHKCVLDSCRALESEGFEITYL 184
[Close]
BLAST of mRNA_H-elongata_contig56945.13149.1 vs. uniprot
Match: W7TNL7_9STRA (Cysteine desulfurase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNL7_9STRA)

HSP 1 Score: 238 bits (606), Expect = 3.510e-73
Identity = 113/164 (68.90%), Postives = 135/164 (82.32%), Query Frame = 1 
Query:   22 SFEKMQKDKRYTPANQVPEEVMSNVGSDEVFSPGFSIKGQAMAGRASYLDMQATTPLDPRALDAMMAYQLESYGNPHSRTHAYGWDTEAAVEKAREQVANLIGASPKEIIFTSGATESNNMSIKGVARFYKGRKKHIITTQTEHKCVLDSCRAMEQEGYEVRTL 513
            S EKM +DKRY P N+VP +V+ ++ + EV SPGFSIKG+A  GRA+YLD QATTP+DPR +D M+ Y   S+GNPHSRTH YGW+ EAAVEKAREQVA+++GAS KEI+FTSGATESNN +IKGVA FY  +KKHIITTQ EHKCVLDSCR +EQEGY+V  L
Sbjct:   83 SHEKMARDKRYKPQNEVPRQVLESMLAKEVHSPGFSIKGEAREGRAAYLDFQATTPMDPRVVDEMLPYMTGSFGNPHSRTHTYGWEAEAAVEKAREQVASILGASAKEIVFTSGATESNNAAIKGVAHFYGEKKKHIITTQIEHKCVLDSCRVLEQEGYQVTYL 246
[Close]
BLAST of mRNA_H-elongata_contig56945.13149.1 vs. uniprot
Match: A0A024UXA3_9STRA (Cysteine desulfurase n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024UXA3_9STRA)

HSP 1 Score: 234 bits (597), Expect = 1.840e-72
Identity = 112/157 (71.34%), Postives = 128/157 (81.53%), Query Frame = 1 
Query:   43 DKRYTPANQVPEEVMSNVGSDEVFSPGFSIKGQAMAGRASYLDMQATTPLDPRALDAMMAYQLESYGNPHSRTHAYGWDTEAAVEKAREQVANLIGASPKEIIFTSGATESNNMSIKGVARFYKGRKKHIITTQTEHKCVLDSCRAMEQEGYEVRTL 513
            DKRY P N+VPE V+ N  SD+VFSPGFSIKGQ   GRA+YLD+QAT+PLDPR LD MM +   SYGNPHSRTH+YGWD + AVE AR QVA+LIGA  KEI+FTSGATESNN  IKG+ RFYK +KKH+ITTQ EHKCVLDSCRA+E EG+EV  L
Sbjct:   31 DKRYRPVNEVPETVLQNAHSDKVFSPGFSIKGQNTEGRAAYLDVQATSPLDPRVLDKMMPHLTHSYGNPHSRTHSYGWDADKAVEHARGQVADLIGADAKEIMFTSGATESNNTIIKGIGRFYKSKKKHVITTQIEHKCVLDSCRALEGEGFEVTYL 187
[Close]
BLAST of mRNA_H-elongata_contig56945.13149.1 vs. uniprot
Match: A0A5A8DDZ5_CAFRO (Cysteine desulfurase n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DDZ5_CAFRO)

HSP 1 Score: 233 bits (594), Expect = 4.020e-72
Identity = 112/172 (65.12%), Postives = 138/172 (80.23%), Query Frame = 1 
Query:    7 PTSSTSFEKMQKDKRYTPANQVPEEVMSNV---GSDEVFSPGFSIKGQAMAGRASYLDMQATTPLDPRALDAMMAYQLESYGNPHSRTHAYGWDTEAAVEKAREQVANLIGASPKEIIFTSGATESNNMSIKGVARFYKGRKKHIITTQTEHKCVLDSCRAMEQEGYEVRTL 513
            P +STSF+KM  DKRY  + +VPE V  N+    + EV SPGFS++GQ + GR SYLDMQATTP+DPR LDAMM +  E YGN HSRTH YGW+ EA VE+AREQVA+LIGASP+EIIFTSGATESNN++IKG+ARF + +++H++TTQ EHKCVLDSCR +E EG+EV  L
Sbjct:    5 PVASTSFDKMATDKRYAASGEVPEGVARNMQASAAGEVLSPGFSVRGQFLEGRPSYLDMQATTPMDPRVLDAMMPFLTEQYGNAHSRTHTYGWEAEAGVERAREQVASLIGASPREIIFTSGATESNNIAIKGIARFQRAKRRHVVTTQIEHKCVLDSCRWLEAEGFEVTYL 176
[Close]
BLAST of mRNA_H-elongata_contig56945.13149.1 vs. uniprot
Match: A0A485KNY2_9STRA (Cysteine desulfurase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KNY2_9STRA)

HSP 1 Score: 231 bits (590), Expect = 1.950e-71
Identity = 109/157 (69.43%), Postives = 126/157 (80.25%), Query Frame = 1 
Query:   43 DKRYTPANQVPEEVMSNVGSDEVFSPGFSIKGQAMAGRASYLDMQATTPLDPRALDAMMAYQLESYGNPHSRTHAYGWDTEAAVEKAREQVANLIGASPKEIIFTSGATESNNMSIKGVARFYKGRKKHIITTQTEHKCVLDSCRAMEQEGYEVRTL 513
            DKRY P N+VP+ V+ N  SD+VFSPGFSIKGQ   GRA+YLD+QAT+PLDPR LD MM +    YGNPHSRTH+YGWD + AVE AR QVA L+GA  KEI+FTSGATESNN  IKG+ RFYK +KKH+ITTQ EHKCVLDSCRA+E EG+EV  L
Sbjct:   28 DKRYKPVNEVPDVVLQNAHSDQVFSPGFSIKGQHTQGRAAYLDVQATSPLDPRVLDKMMEHMTHGYGNPHSRTHSYGWDADKAVEHARTQVAALVGADAKEIMFTSGATESNNTIIKGIGRFYKAKKKHVITTQIEHKCVLDSCRALEAEGFEVTYL 184
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56945.13149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSH6_ECTSI1.450e-9689.38Cysteine desulfurase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YNJ7_9STRA1.930e-8075.63Cysteine desulfurase n=1 Tax=Tribonema minus TaxID... [more]
A0A1W0A898_9STRA7.940e-7673.89Cysteine desulfurase n=1 Tax=Thraustotheca clavata... [more]
A0A067BY07_SAPPC4.470e-7572.61Cysteine desulfurase n=3 Tax=Saprolegniaceae TaxID... [more]
A0A812YIM4_9DINO9.720e-7570.00Cysteine desulfurase n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A6G0XGN9_9STRA1.520e-7371.34Cysteine desulfurase n=1 Tax=Aphanomyces euteiches... [more]
W7TNL7_9STRA3.510e-7368.90Cysteine desulfurase n=2 Tax=Monodopsidaceae TaxID... [more]
A0A024UXA3_9STRA1.840e-7271.34Cysteine desulfurase n=6 Tax=Aphanomyces TaxID=100... [more]
A0A5A8DDZ5_CAFRO4.020e-7265.12Cysteine desulfurase n=1 Tax=Cafeteria roenbergens... [more]
A0A485KNY2_9STRA1.950e-7169.43Cysteine desulfurase n=1 Tax=Aphanomyces stellatus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56945contigH-elongata_contig56945:704..3409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.0
Seed ortholog evalue2.6e-62
Seed eggNOG ortholog112098.XP_008606406.1
Preferred nameNFS1
KEGG rclassRC01789,RC02313
KEGG koko:K04487
KEGG ReactionR07460,R11528,R11529
KEGG Pathwayko00730,ko01100,ko04122,map00730,map01100,map04122
GOsGO:0000096,GO:0000166,GO:0000959,GO:0000963,GO:0002097,GO:0002098,GO:0002143,GO:0003674,GO:0003824,GO:0004123,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006139,GO:0006163,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006520,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009451,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016226,GO:0016740,GO:0016782,GO:0016783,GO:0016829,GO:0016846,GO:0017076,GO:0018130,GO:0018282,GO:0018283,GO:0019538,GO:0019637,GO:0019693,GO:0019725,GO:0019752,GO:0022607,GO:0030003,GO:0030554,GO:0031071,GO:0031163,GO:0031974,GO:0031981,GO:0032324,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0036211,GO:0042278,GO:0042592,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043545,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044571,GO:0046039,GO:0046128,GO:0046483,GO:0046872,GO:0046914,GO:0046916,GO:0046983,GO:0048878,GO:0050801,GO:0051186,GO:0051188,GO:0051189,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055086,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070525,GO:0070900,GO:0070903,GO:0071704,GO:0071840,GO:0072521,GO:0090304,GO:0090407,GO:0090646,GO:0097159,GO:0097367,GO:0098771,GO:0140053,GO:1900864,GO:1901068,GO:1901135,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1990221
EggNOG free text desc.cysteine desulfurase activity
EggNOG OGsCOG1104@1,KOG1549@2759
EC2.8.1.7
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02048,ko03016,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCysteine desulfurase
Ec32 orthologEc-21_003740.1
Exons3
Model size513
Cds size513
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56945.13149.1prot_H-elongata_contig56945.13149.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56945 704..3409 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930925.6550868-CDS-H-elongata_contig56945:703..8711622930925.6550868-CDS-H-elongata_contig56945:703..871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56945 704..871 +
1691679627.527328-CDS-H-elongata_contig56945:703..8711691679627.527328-CDS-H-elongata_contig56945:703..871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56945 704..871 +
1622930925.678016-CDS-H-elongata_contig56945:1766..19431622930925.678016-CDS-H-elongata_contig56945:1766..1943Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56945 1767..1943 +
1691679627.5427864-CDS-H-elongata_contig56945:1766..19431691679627.5427864-CDS-H-elongata_contig56945:1766..1943Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56945 1767..1943 +
1622930925.6963062-CDS-H-elongata_contig56945:3241..34091622930925.6963062-CDS-H-elongata_contig56945:3241..3409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56945 3242..3409 +
1691679627.5574224-CDS-H-elongata_contig56945:3241..34091691679627.5574224-CDS-H-elongata_contig56945:3241..3409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56945 3242..3409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56945.13149.1

>prot_H-elongata_contig56945.13149.1 ID=prot_H-elongata_contig56945.13149.1|Name=mRNA_H-elongata_contig56945.13149.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp
SVPTSSTSFEKMQKDKRYTPANQVPEEVMSNVGSDEVFSPGFSIKGQAMA
GRASYLDMQATTPLDPRALDAMMAYQLESYGNPHSRTHAYGWDTEAAVEK
AREQVANLIGASPKEIIFTSGATESNNMSIKGVARFYKGRKKHIITTQTE
HKCVLDSCRAMEQEGYEVRTL
back to top

mRNA from alignment at H-elongata_contig56945:704..3409+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56945.13149.1 ID=mRNA_H-elongata_contig56945.13149.1|Name=mRNA_H-elongata_contig56945.13149.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2706bp|location=Sequence derived from alignment at H-elongata_contig56945:704..3409+ (Himanthalia elongata Himel1 dioecious)
AGCGTTCCCACGAGCAGCACTTCTTTCGAAAAGATGCAGAAGGACAAGCG
CTACACCCCCGCCAACCAGGTGCCCGAAGAAGTGATGTCCAACGTGGGCA
GTGACGAAGTCTTCTCCCCAGGCTTTAGCATCAAGGGTCAGGCGATGGCG
GGAAGGGCATCCTACTTGGTGAGCGATCGACCACAAAAACGCTTGCTTTT
AATGTATGTTTTATGTTTCTCTCTCTCTTTCTCTCTCTCTCTCTCCGTCT
ATTTTTTGTTTTTTTCGTCGCTCAAGGGTAGAAGGTGAGGTATTTTGTGG
ACGAAGGCAAGAGTAGAAGGGGAGGTGATTCGGCCAGTAGCAGGGGAAAG
CCCCCCTGTGTTACTATTCTCGCTTGTCGTTGTATTATGCTATGGTGCCC
CCTTAACCCTTCTGGAACTGAATTTCAAGTTTTATATTGAATTTAGTATG
TAAAAAAAACAGATCGAGTTCCATAGGGGTGTTGTGTAGGGTGGTTTTAA
GTGTGGTGGAGTCCAACGTTAAATATGACTTGGGGTCGTTCGTGATTCCC
CCCGATATTTTTGCCGGGTAGTCGGGTCGGCACTCGGGCCGTTATCCACT
CCTGTGCAGGCAAGTACACTGCACAGTGTACAACTCGAAGGCACTTATTA
GATCGATGTAATGGGCCCATCACGCAATGTCTCTGCCCGCTGGGGAGGAA
TACAGGTACAATAATTTCAATTAATGATTTTTCTGTTATGAATTGCTCTA
TCCAAGTAGAAAATACGGTATAAATTGCCTTCTAAATACGGTAGAAAATA
TTCGGGAAAAAAATGAATAGTACTAAAAAACTGACTTCGAAAAGTCTCGA
GAAGAGTCAACGCGCGCACCGCGCCGCGCGTCAAACTCCAGCAGGCGTTA
TTTATCACGTTCCCTCACGGTTCTCCTCGCTGAATTTCCCCCACCGAATC
GTCCGCTGCTTTTCGCGATTTGTTGGATATGCCGCTTTTCCCGCCGTGGT
CCACTTGGATATGCCGCATTTTTATCGGTCGATGCGGCGGACGCGGCATC
TTCTCGAGAGCAGGACATGCAGGCGACGACCCCCCTGGACCCCCGTGCCC
TCGATGCCATGATGGCTTACCAGCTCGAGAGCTACGGCAACCCGCACTCC
CGCACGCACGCGTACGGCTGGGACACCGAGGCTGCCGTCGAAAAGGCGCG
CGAGCAAGTTGCCAACCTTATCGGGGCGTCTCCGAAAGAGGTGCGCGCGT
GTCGTGTCTTACCGCATCGTGGCCTGTGATATATTTTTTTAATGTTTTGC
CTGCCAACCTTATCGTGTCTTACCTTATCTTTTACCGTTGCCTGCTTGTG
GGGGGAAGGAGGGGAGGGGAGAGGAGGGAATGAAAATATAATTAAGAAGG
AGAGAAGTGTACAATAAAGGCAGTGATACATTGTCTCCTCTCGTTTATTC
GCCTCGCCTTTAGGGGACACGTAACTCCTTATCTTCCTTACCTTCGCTTT
TGAGTGACAGTGTGGGCCCACTCCTTTTCACTGTATCCTATACTAATTAA
TAATAATAACGTTCCTCGTGCGCTTTGATCCTGAGTAGACTGGAAATAAT
CCCCCTCTCCCCCCCCCCCGTTCCCTCACGTTTCTCTTTATTAATTTCTA
TGATACGTTTTCCACCTCTTATCAAACTATGCGGCTGTGTTGGAACGATC
GGACTATGGGGATGTGTGGGTGTGGTGATCCTCTCCCGACTATGGGGCTG
TAATAAAGAGGACTCTGTAATAAAAAGGATCGTATACTTAAGTTAAACGT
GTTTCCATCCTAACCAAGATACACCAAGCACCAAACACCCTTACGTATCG
TATATGCCGGGAGGGAGCGATATGATATATATATATATATACGATACGTG
ATACGTGATATAGGGTTTTCGCTGGCCAGGTTGCGCTTCGCAAGGGTGTG
ATATACCAGCGCTTAGTCATCCTCTTCCTTGTCTTTGCCGCGCCAAACCG
GACACGCCATGAGTTATTTGGACAGTGCACACACCGAGTAGCCAAATGTT
GAAACATTCATTGGGCGTGACTATACTCTTAAGGACCTCAAAATATCTTG
ATTTACTCGCGAAGGCATATCGGCCGCACGCATACTCTACATATCCAACG
GTGTATCTGTGTGTGTGTGTGTGTGATACACTCTTGGCTATAATATGCTC
ATTCATTTTCCTGGATTGGTTCCTGCCTTGGGCTTCCCAACAATCTATTA
TTCAGAAGGCATCCTATAAAAAAGGAGAGAGAGATGCGAAACTATTCGAC
CGAGGTCTCTGAGCTCATAGGACACACTGCATGAGCTAACGTTCCCCCAT
GTCCTGTAAGACCTGGGACGGGACGGGGGGGTAACTTCGGAACTTCGGAG
GCGTTCTTCCCTTGCTATACATGCGGTATTATTAACCCTTAAAATGATAA
CATCACGCGCTTCAATACATGCTCTTGACCTCTGACCCCATCCGGGGCTT
ATCTCGAGTATGCCTCGTTTTCCCCTTGAGGAGCGCAGATCATATTCACC
TCGGGCGCGACGGAATCCAACAACATGTCCATCAAGGGGGTGGCGCGGTT
CTACAAAGGGCGTAAGAAGCACATCATCACCACACAGACGGAGCACAAGT
GCGTGCTCGATAGCTGCCGAGCCATGGAGCAGGAGGGTTACGAGGTGCGT
ACTCTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig56945:704..3409+

>mRNA_H-elongata_contig56945.13149.1 ID=mRNA_H-elongata_contig56945.13149.1|Name=mRNA_H-elongata_contig56945.13149.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1026bp|location=Sequence derived from alignment at H-elongata_contig56945:704..3409+ (Himanthalia elongata Himel1 dioecious)
AGCGTTCCCACGAGCAGCACTTCTTTCGAAAAGATGCAGAAGGACAAGCG
CTACACCCCCGCCAACCAGGTGCCCGAAGAAGTGATGTCCAACGTGGGCA
GTGACGAAGTCTTCTCCCCAGGCTTTAGCATCAAGGGTCAGGCGATGGCG
GGAAGGGCATCCTACTTGAGCGTTCCCACGAGCAGCACTTCTTTCGAAAA
GATGCAGAAGGACAAGCGCTACACCCCCGCCAACCAGGTGCCCGAAGAAG
TGATGTCCAACGTGGGCAGTGACGAAGTCTTCTCCCCAGGCTTTAGCATC
AAGGGTCAGGCGATGGCGGGAAGGGCATCCTACTTGGACATGCAGGCGAC
GACCCCCCTGGACCCCCGTGCCCTCGATGCCATGATGGCTTACCAGCTCG
AGAGCTACGGCAACCCGCACTCCCGCACGCACGCGTACGGCTGGGACACC
GAGGCTGCCGTCGAAAAGGCGCGCGAGCAAGTTGCCAACCTTATCGGGGC
GTCTCCGAAAGAGGACATGCAGGCGACGACCCCCCTGGACCCCCGTGCCC
TCGATGCCATGATGGCTTACCAGCTCGAGAGCTACGGCAACCCGCACTCC
CGCACGCACGCGTACGGCTGGGACACCGAGGCTGCCGTCGAAAAGGCGCG
CGAGCAAGTTGCCAACCTTATCGGGGCGTCTCCGAAAGAGATCATATTCA
CCTCGGGCGCGACGGAATCCAACAACATGTCCATCAAGGGGGTGGCGCGG
TTCTACAAAGGGCGTAAGAAGCACATCATCACCACACAGACGGAGCACAA
GTGCGTGCTCGATAGCTGCCGAGCCATGGAGCAGGAGGGTTACGAGGTGC
GTACTCTGATCATATTCACCTCGGGCGCGACGGAATCCAACAACATGTCC
ATCAAGGGGGTGGCGCGGTTCTACAAAGGGCGTAAGAAGCACATCATCAC
CACACAGACGGAGCACAAGTGCGTGCTCGATAGCTGCCGAGCCATGGAGC
AGGAGGGTTACGAGGTGCGTACTCTG
back to top