mRNA_H-elongata_contig56939.13147.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56939.13147.1
Unique NamemRNA_H-elongata_contig56939.13147.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56939.13147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56939contigH-elongata_contig56939:773..3117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2280
Cds size1284
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56939.13147.1prot_H-elongata_contig56939.13147.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56939 867..2150 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930925.435438-UTR-H-elongata_contig56939:772..8661622930925.435438-UTR-H-elongata_contig56939:772..866Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56939 773..866 +
1691679627.4200356-UTR-H-elongata_contig56939:772..8661691679627.4200356-UTR-H-elongata_contig56939:772..866Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56939 773..866 +
1622930925.4734707-UTR-H-elongata_contig56939:2150..27491622930925.4734707-UTR-H-elongata_contig56939:2150..2749Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56939 2151..2749 +
1691679627.4527576-UTR-H-elongata_contig56939:2150..27491691679627.4527576-UTR-H-elongata_contig56939:2150..2749Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56939 2151..2749 +
1622930925.4990482-UTR-H-elongata_contig56939:2814..31171622930925.4990482-UTR-H-elongata_contig56939:2814..3117Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56939 2815..3117 +
1691679627.468793-UTR-H-elongata_contig56939:2814..31171691679627.468793-UTR-H-elongata_contig56939:2814..3117Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56939 2815..3117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930925.4570372-CDS-H-elongata_contig56939:866..21501622930925.4570372-CDS-H-elongata_contig56939:866..2150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56939 867..2150 +
1691679627.4312556-CDS-H-elongata_contig56939:866..21501691679627.4312556-CDS-H-elongata_contig56939:866..2150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56939 867..2150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56939.13147.1

>prot_H-elongata_contig56939.13147.1 ID=prot_H-elongata_contig56939.13147.1|Name=mRNA_H-elongata_contig56939.13147.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=428bp
MELVSLTICAACRESVFPCVRADSLLLHRLVRARDSRSRVPPLRAHSVIW
GHCSLDSLSLPIMLLVGMRCLTFSGDFNHSVDRIAWPPSIEELNLGGRFN
QPIHRVEWPPRLRKLVLSEFFNQPIEGVMWSASLQTLTFKREFDRPIAKA
VWPASLQELTLGMLFNQPLIGSVWPATLKRLTFGMLFNQSIIRVVWPESL
QKLYFGAFDSESLVGGKWPAILRRLSSYSSFNQPIVGVIWPKFLQQLSFG
KSFDQPIVAVAWPESLQEISFGPCFEQPIIGVAWPASLRRLSFGKYFNES
IDGVEWPASLRILSFGSEFNRSIAGVRWPTSLQQLSFGSRFNKPITGVAW
PDSLQELSFGNDPTFYSEGELLPDSLQGLMFGATMGETFNRRRLANIVWP
AALKRLSIEGEDITLENSEHGGIRARV*
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mRNA from alignment at H-elongata_contig56939:773..3117+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56939.13147.1 ID=mRNA_H-elongata_contig56939.13147.1|Name=mRNA_H-elongata_contig56939.13147.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2345bp|location=Sequence derived from alignment at H-elongata_contig56939:773..3117+ (Himanthalia elongata Himel1 dioecious)
AGGGGAAAGCTCTCTCGGTGAGGCTGCGTTGAAGGTGTTCGTCGACCACT
GCCTCCGAAGTGACACTGGATGCAAACCGGAAACACGCAAGAATATGGAG
CTAGTGTCTTTAACAATATGCGCAGCGTGCCGCGAGTCTGTCTTTCCGTG
TGTACGAGCCGATTCGCTATTGCTTCATCGCCTAGTTAGGGCACGGGACT
CCCGATCGCGGGTTCCCCCTTTAAGGGCTCATAGCGTGATCTGGGGACAT
TGCTCGTTGGATTCCTTGTCGCTCCCGATCATGCTGCTGGTGGGCATGCG
GTGCTTGACGTTCTCGGGAGACTTCAATCATTCTGTGGACCGAATCGCGT
GGCCACCGTCGATTGAAGAGCTTAATCTCGGCGGAAGATTCAATCAACCC
ATCCACCGAGTAGAGTGGCCACCCCGCTTGCGCAAGCTGGTTCTCAGTGA
GTTCTTCAATCAGCCCATCGAGGGAGTGATGTGGTCGGCGTCTCTTCAAA
CGTTGACCTTCAAGAGAGAGTTCGACCGTCCAATCGCTAAAGCAGTTTGG
CCTGCCTCGTTGCAGGAGCTGACGCTCGGTATGTTGTTCAACCAGCCGCT
CATCGGATCGGTGTGGCCCGCCACCCTGAAAAGGCTGACGTTTGGCATGT
TGTTCAACCAGTCGATCATTAGAGTAGTGTGGCCAGAGTCATTGCAGAAG
CTGTATTTCGGGGCCTTCGACAGCGAGTCACTCGTCGGAGGTAAGTGGCC
GGCGATATTGCGGAGACTATCCTCGTATAGTTCGTTCAACCAGCCGATCG
TCGGGGTGATATGGCCGAAGTTCCTCCAGCAGCTGTCTTTCGGCAAGTCG
TTCGACCAGCCAATCGTCGCGGTAGCTTGGCCGGAATCGCTGCAAGAGAT
ATCGTTCGGTCCGTGCTTTGAGCAGCCGATCATCGGAGTAGCGTGGCCAG
CGTCGTTGCGGAGGCTGTCGTTCGGTAAGTACTTCAACGAGTCAATCGAT
GGAGTGGAATGGCCGGCATCGTTGCGGATTCTGTCATTCGGTAGCGAGTT
CAACAGGTCAATTGCAGGAGTTCGGTGGCCAACCTCGTTGCAGCAGCTTT
CGTTCGGCAGCCGATTCAACAAGCCGATCACGGGGGTGGCGTGGCCAGAT
TCGCTCCAGGAGCTATCGTTCGGAAATGACCCCACATTCTACAGCGAGGG
GGAGCTGCTTCCGGACTCGCTGCAGGGGCTGATGTTCGGCGCAACTATGG
GGGAAACGTTTAACCGAAGGCGCCTCGCCAACATCGTGTGGCCCGCCGCT
TTGAAGAGGTTGAGCATTGAAGGAGAAGATATCACGCTGGAAAATTCGGA
ACATGGTGGGATCCGGGCTCGCGTATAGGGTCGATATTTAATTTATATAC
GTATATACCTATATATATATATATATCTGAAACGCGAAGTGATATCAAAA
TAGGTTGTTGGTTGTCGGGCTCTGTTTGACCTTTACATATCAGGTATTGC
TGATGTAGGTTGAAACGGTACAACGGTCCAGCCGTATTCGCGTCGTCTGG
GCGAAATAAAAAAAAGTGCTCTGGGATCCTGTCAACCGCTTGGCAATGGT
GAGTCTTTGAAAAGAACCACCAGTTTATGGTAATCGTCGTTTGGTGTATA
GTCTAAAGCTTACTATTATATTAATAGGTCCTATTTTCTTTTTAAGCTAA
GACTGAAAAGTGGAGCTACTCGTAACTGAAGAATGTTTGTGTTATTATTA
GTGGTATCTATTTCTGTAATTTTGTATCTTCTGCCTTATTGCGCTATCAA
TAGTGGAAACTGGAAAGGCTATTTCGTGGTATTTTTTATAATACCTGGAC
TTCGCATGTACCTATTACAACTTTTGGCACTTATTTTGTCCCAAAAGGCG
AGGGATACCTTCGAGGAGCTCGAAGGGTACTGTTGATGTGAACGAGCCAA
AAGGTATCGAATAATGTTGGTGTTTTGGCAAACGTTGGTTGAATAAAACC
TGGGCAAATCTCCCCTGAGATTCGAACATGGCCTTCCAAAAGCTGGGTCT
GTGGGACATGCCGTTCCAAACCTTTTTATTTTAAAAACCTTGAACTCATT
CCAACCCTCCGAACATCCACACCTTGGCGCCGTGAGAGGTGTACCATCCA
GGGGACCAACTATCGTAAGGTTCGAATGTGTCAATTACTACCTTTGAGCA
CAAAATCGTCACACCACGTGATAAATCTTTTCCCCAATAATAGTAAGTTC
ATCGGGTCAACGGAATATTGTCAGGGATCCCATTATTATACCGTACACTT
TACATTATTCATTGGGGAAGACAAACGAAAGCTTCGAGAGTGGGC
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Coding sequence (CDS) from alignment at H-elongata_contig56939:773..3117+

>mRNA_H-elongata_contig56939.13147.1 ID=mRNA_H-elongata_contig56939.13147.1|Name=mRNA_H-elongata_contig56939.13147.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2568bp|location=Sequence derived from alignment at H-elongata_contig56939:773..3117+ (Himanthalia elongata Himel1 dioecious)
ATGGAGCTAGTGTCTTTAACAATATGCGCAGCGTGCCGCGAGTCTGTCTT
TCCGTGTGTACGAGCCGATTCGCTATTGCTTCATCGCCTAGTTAGGGCAC
GGGACTCCCGATCGCGGGTTCCCCCTTTAAGGGCTCATAGCGTGATCTGG
GGACATTGCTCGTTGGATTCCTTGTCGCTCCCGATCATGCTGCTGGTGGG
CATGCGGTGCTTGACGTTCTCGGGAGACTTCAATCATTCTGTGGACCGAA
TCGCGTGGCCACCGTCGATTGAAGAGCTTAATCTCGGCGGAAGATTCAAT
CAACCCATCCACCGAGTAGAGTGGCCACCCCGCTTGCGCAAGCTGGTTCT
CAGTGAGTTCTTCAATCAGCCCATCGAGGGAGTGATGTGGTCGGCGTCTC
TTCAAACGTTGACCTTCAAGAGAGAGTTCGACCGTCCAATCGCTAAAGCA
GTTTGGCCTGCCTCGTTGCAGGAGCTGACGCTCGGTATGTTGTTCAACCA
GCCGCTCATCGGATCGGTGTGGCCCGCCACCCTGAAAAGGCTGACGTTTG
GCATGTTGTTCAACCAGTCGATCATTAGAGTAGTGTGGCCAGAGTCATTG
CAGAAGCTGTATTTCGGGGCCTTCGACAGCGAGTCACTCGTCGGAGGTAA
GTGGCCGGCGATATTGCGGAGACTATCCTCGTATAGTTCGTTCAACCAGC
CGATCGTCGGGGTGATATGGCCGAAGTTCCTCCAGCAGCTGTCTTTCGGC
AAGTCGTTCGACCAGCCAATCGTCGCGGTAGCTTGGCCGGAATCGCTGCA
AGAGATATCGTTCGGTCCGTGCTTTGAGCAGCCGATCATCGGAGTAGCGT
GGCCAGCGTCGTTGCGGAGGCTGTCGTTCGGTAAGTACTTCAACGAGTCA
ATCGATGGAGTGGAATGGCCGGCATCGTTGCGGATTCTGTCATTCGGTAG
CGAGTTCAACAGGTCAATTGCAGGAGTTCGGTGGCCAACCTCGTTGCAGC
AGCTTTCGTTCGGCAGCCGATTCAACAAGCCGATCACGGGGGTGGCGTGG
CCAGATTCGCTCCAGGAGCTATCGTTCGGAAATGACCCCACATTCTACAG
CGAGGGGGAGCTGCTTCCGGACTCGCTGCAGGGGCTGATGTTCGGCGCAA
CTATGGGGGAAACGTTTAACCGAAGGCGCCTCGCCAACATCGTGTGGCCC
GCCGCTTTGAAGAGGTTGAGCATTGAAGGAGAAGATATCACGCTGGAAAA
TTCGGAACATGGTGGGATCCGGGCTCGCGTATAGATGGAGCTAGTGTCTT
TAACAATATGCGCAGCGTGCCGCGAGTCTGTCTTTCCGTGTGTACGAGCC
GATTCGCTATTGCTTCATCGCCTAGTTAGGGCACGGGACTCCCGATCGCG
GGTTCCCCCTTTAAGGGCTCATAGCGTGATCTGGGGACATTGCTCGTTGG
ATTCCTTGTCGCTCCCGATCATGCTGCTGGTGGGCATGCGGTGCTTGACG
TTCTCGGGAGACTTCAATCATTCTGTGGACCGAATCGCGTGGCCACCGTC
GATTGAAGAGCTTAATCTCGGCGGAAGATTCAATCAACCCATCCACCGAG
TAGAGTGGCCACCCCGCTTGCGCAAGCTGGTTCTCAGTGAGTTCTTCAAT
CAGCCCATCGAGGGAGTGATGTGGTCGGCGTCTCTTCAAACGTTGACCTT
CAAGAGAGAGTTCGACCGTCCAATCGCTAAAGCAGTTTGGCCTGCCTCGT
TGCAGGAGCTGACGCTCGGTATGTTGTTCAACCAGCCGCTCATCGGATCG
GTGTGGCCCGCCACCCTGAAAAGGCTGACGTTTGGCATGTTGTTCAACCA
GTCGATCATTAGAGTAGTGTGGCCAGAGTCATTGCAGAAGCTGTATTTCG
GGGCCTTCGACAGCGAGTCACTCGTCGGAGGTAAGTGGCCGGCGATATTG
CGGAGACTATCCTCGTATAGTTCGTTCAACCAGCCGATCGTCGGGGTGAT
ATGGCCGAAGTTCCTCCAGCAGCTGTCTTTCGGCAAGTCGTTCGACCAGC
CAATCGTCGCGGTAGCTTGGCCGGAATCGCTGCAAGAGATATCGTTCGGT
CCGTGCTTTGAGCAGCCGATCATCGGAGTAGCGTGGCCAGCGTCGTTGCG
GAGGCTGTCGTTCGGTAAGTACTTCAACGAGTCAATCGATGGAGTGGAAT
GGCCGGCATCGTTGCGGATTCTGTCATTCGGTAGCGAGTTCAACAGGTCA
ATTGCAGGAGTTCGGTGGCCAACCTCGTTGCAGCAGCTTTCGTTCGGCAG
CCGATTCAACAAGCCGATCACGGGGGTGGCGTGGCCAGATTCGCTCCAGG
AGCTATCGTTCGGAAATGACCCCACATTCTACAGCGAGGGGGAGCTGCTT
CCGGACTCGCTGCAGGGGCTGATGTTCGGCGCAACTATGGGGGAAACGTT
TAACCGAAGGCGCCTCGCCAACATCGTGTGGCCCGCCGCTTTGAAGAGGT
TGAGCATTGAAGGAGAAGATATCACGCTGGAAAATTCGGAACATGGTGGG
ATCCGGGCTCGCGTATAG
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