mRNA_H-elongata_contig56926.13146.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56926.13146.1
Unique NamemRNA_H-elongata_contig56926.13146.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56926.13146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56926contigH-elongata_contig56926:295..2404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size301
Cds size210
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56926.13146.1prot_H-elongata_contig56926.13146.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56926 295..2314 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930925.1740284-CDS-H-elongata_contig56926:294..4251622930925.1740284-CDS-H-elongata_contig56926:294..425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56926 295..425 -
1691679627.3826094-CDS-H-elongata_contig56926:294..4251691679627.3826094-CDS-H-elongata_contig56926:294..425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56926 295..425 -
1622930925.255543-CDS-H-elongata_contig56926:2235..23141622930925.255543-CDS-H-elongata_contig56926:2235..2314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56926 2236..2314 -
1691679627.3938587-CDS-H-elongata_contig56926:2235..23141691679627.3938587-CDS-H-elongata_contig56926:2235..2314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56926 2236..2314 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930925.3919363-UTR-H-elongata_contig56926:2314..24041622930925.3919363-UTR-H-elongata_contig56926:2314..2404Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56926 2315..2404 -
1691679627.407536-UTR-H-elongata_contig56926:2314..24041691679627.407536-UTR-H-elongata_contig56926:2314..2404Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56926 2315..2404 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56926.13146.1

>prot_H-elongata_contig56926.13146.1 ID=prot_H-elongata_contig56926.13146.1|Name=mRNA_H-elongata_contig56926.13146.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MSDNTPAKKRKTAQLCLGQWLTPSNKDEKINYALGASGGRSSTSSSFSGA
MRSSTERGAESTGEKWAKYG
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mRNA from alignment at H-elongata_contig56926:295..2404-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56926.13146.1 ID=mRNA_H-elongata_contig56926.13146.1|Name=mRNA_H-elongata_contig56926.13146.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2110bp|location=Sequence derived from alignment at H-elongata_contig56926:295..2404- (Himanthalia elongata Himel1 dioecious)
CAGGAGGAGGCCCCAGGGGAAACGACCCGGCGGTGAGATCGAGCTCTACT
ATTATAGAGGTTGGAGAGAGGGGATTTCATAGAGAGGGAAATGTCCGACA
ACACCCCCGCGAAGAAGAGGAAGACCGCCCAGCTTTGCCTAGGGCAGTGG
TTGACGCCGTCTAACAAAGGTGAGTGGGTCGTGCGGTTAGAGGGCTGACT
GGCCTATAGCTCTGTTACAAAAATACTAGCCTATATTAAGATTAAAGTAG
AGGTTAGTTCAACAAGTTGGATGAAAATATGTGGTGTCTCTTTCCGGAAT
TATCGATTTAATTTGATTGGTCAGACGCGTTTTCCAGATGCTTGAATAAT
TTAGTTTGGACAACGCCGGGACCGATTTGCATTCCCTCGCCAGTATCTAA
CGGCTTGGGGTTACCAGATTCAGCCTGGATTGAGGAATGAGCGGACTGAC
GCGGGACGGGACGGCTGAACCCGTCTCGCGAGACTAAATTTTCAATTTTC
AGGCATGAACGGGAATAGAGAACGTTCATTTCCCCTGTTCAGCTGATGAC
GAATAGGTGACAACCAAATCCGGTTGATCCGTAATCTGCTAGGTGTAATT
AACACACACATACACACACTAACACACACACACAGTCTGCGCCAAGATGC
CAGGGCTGTGGACGGGCTCGAGTTTAAATCCGATCGGTTTCGGTGTTGAC
CGAATCTTACGTGGCTGGTATTTGCCAAACTCGTCAAATTCCCTTTTTTT
TCAATGTCCAGTTCGTGCCCTCGTTTGTTTTATTGATTGTTTTTTATGAT
TTGTTATTTTGAAGGGAAAATGGGTACCTACTGAAAGATTTTAAATATAT
ATGTTGCGAGCAGTACATTTCGTCGAGTAATGTGTAATGGAATTATTAAT
GCTAGCTTGCCGGTTGCCATATTTTTTCTGCAGCAGCAACCTTTCGTAGG
AGACGCCCCCGGACGTTTTCACCCCGGTTTTCCGTGTAATGAAGGATACG
ATAATGGGGGATTGGGTTCCAGGGACTCTGGTGTTATTAGGCAACAGTGA
CGTGGTTGATTGTTTCGGTTAGCGGCGTCAATTAAAACGGTGTGCGGATA
CCGCTGAATACACAACACTATACTATTAAGATGAGTTCGACTACATTGCC
CAGAGCGTATGGTATGGGAGACGTGCGGGTCTAAACAGGGGTATTTTTTT
AAGAAACAGTGTAAAACTCATCGCTCAATCACCGCCCCGAGAAGGTTTGG
ATATTTGTAACAAGCTGCTTGGGTTTTTTACGCCCGTTTGAAAGTTTGTA
GTGCCAGCTGTTAATAGCTCTCTCAACGAGGAGTCAAGAGGCCCTTCGCC
AGATTTCCCTCAAAAGCCTCAAGATATTGGTAGAGTCTCATGTGGATAAT
CTACGCGACAATTCAGGAAATCTCAGGGATCTGGTCATCCAGCACCAGCT
GTGTTCCACGGTTTCCCCCGCCGTAAGATGGGTTTTGAACACGCATGGAC
GTTAAGGGAGCACGCCTGAGATCGCAAGGAGCTAACTAAGTGGCTCGTGA
TTTAACACAATCAGAAAGATAAATAAAACCCGCCGGAGTCAGCCGAGAAT
GCGGTAATTCACCGCGACGGACACGTGAAATAGTCTCTAGCGATAGAGAA
CCAGACGATAGTTGATTCTCTGGACTTCACCTTTTATGGTGTAAGTAAAG
GAGTGGATGTTCGGAGGTTTTGAATTAGTTCATATGTTTTTAAAGAAAAA
AGAGAAGATTTTTGTTTTAAATAAACCCTTTTCCCTTTGACAAATAAGTT
TTCCCCGGAGGTACAGAACGCCAACCCTGCCATTCAGATCGAAGAAAATC
ATCTTAGATCAAACATAGTGTCCAAAAATAAACGGGGAAGTTGTCCCCCT
CCCCACGGGGTCTGTTGTTATCGAAGGAAAGACCCCAATACGAGGAAGCG
ATGGTGCGTCGATGCCCGTGGCTCTGCAGATGAAAAAATCAACTATGCGC
TCGGGGCGTCAGGGGGCCGCTCGTCTACTTCGTCGTCCTTTTCCGGCGCG
ATGAGGAGTTCTACCGAACGAGGGGCTGAAAGTACTGGAGAGAAGTGGGC
CAAGTACGGA
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Coding sequence (CDS) from alignment at H-elongata_contig56926:295..2404-

>mRNA_H-elongata_contig56926.13146.1 ID=mRNA_H-elongata_contig56926.13146.1|Name=mRNA_H-elongata_contig56926.13146.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig56926:295..2404- (Himanthalia elongata Himel1 dioecious)
ATGTCCGACAACACCCCCGCGAAGAAGAGGAAGACCGCCCAGCTTTGCCT
AGGGCAGTGGTTGACGCCGTCTAACAAAGATGTCCGACAACACCCCCGCG
AAGAAGAGGAAGACCGCCCAGCTTTGCCTAGGGCAGTGGTTGACGCCGTC
TAACAAAGATGAAAAAATCAACTATGCGCTCGGGGCGTCAGGGGGCCGCT
CGTCTACTTCGTCGTCCTTTTCCGGCGCGATGAGGAGTTCTACCGAACGA
GGGGCTGAAAGTACTGGAGAGAAGTGGGCCAAGTACGGAATGAAAAAATC
AACTATGCGCTCGGGGCGTCAGGGGGCCGCTCGTCTACTTCGTCGTCCTT
TTCCGGCGCGATGAGGAGTTCTACCGAACGAGGGGCTGAAAGTACTGGAG
AGAAGTGGGCCAAGTACGGA
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