mRNA_H-elongata_contig56868.13140.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56868.13140.1
Unique NamemRNA_H-elongata_contig56868.13140.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56868.13140.1 vs. uniprot
Match: D7G6Q6_ECTSI (COX17 homolog, cytochrome c oxidase assembly protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Q6_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 6.950e-14
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 SLPARLQARDDCVIMNGEDQCKEFIEAHKMCLRSEGFDI 117
            S P    ARDDCVIMNGE++CK FIEAHK CLRSEGFDI
Sbjct:   44 SCPDTKAARDDCVIMNGEEECKNFIEAHKECLRSEGFDI 82
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BLAST of mRNA_H-elongata_contig56868.13140.1 vs. uniprot
Match: A0A0P1B2C6_PLAHL (Cytochrome c oxidase copper chaperone n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B2C6_PLAHL)

HSP 1 Score: 63.9 bits (154), Expect = 1.480e-12
Identity = 28/39 (71.79%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 SLPARLQARDDCVIMNGEDQCKEFIEAHKMCLRSEGFDI 117
            S P   QARD C++ NGEDQCKE IEAHK CLRSEGF I
Sbjct:   26 SCPTTKQARDLCIVKNGEDQCKELIEAHKACLRSEGFKI 64
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BLAST of mRNA_H-elongata_contig56868.13140.1 vs. uniprot
Match: A0A662WGN7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WGN7_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 8.990e-12
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 SLPARLQARDDCVIMNGEDQCKEFIEAHKMCLRSEGFDI 117
            S P   QARD CV+ NGED+CKE IEAHK CLRSEGF +
Sbjct:   28 SCPTTKQARDLCVVTNGEDKCKEVIEAHKACLRSEGFTV 66
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BLAST of mRNA_H-elongata_contig56868.13140.1 vs. uniprot
Match: F0ZZA3_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZZA3_DICPU)

HSP 1 Score: 60.8 bits (146), Expect = 2.340e-11
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 SLPARLQARDDCVIMNGEDQCKEFIEAHKMCLRSEGFDI 117
            + P   + RD+C++ NGED+C +FIEAHK CLRSEGFD+
Sbjct:   25 ACPETKKTRDECIVNNGEDKCAQFIEAHKACLRSEGFDV 63
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BLAST of mRNA_H-elongata_contig56868.13140.1 vs. uniprot
Match: UPI000644844F (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644844F)

HSP 1 Score: 60.5 bits (145), Expect = 3.320e-11
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 SLPARLQARDDCVIMNGEDQCKEFIEAHKMCLRSEGFDI 117
            + P   + RD+C++MNGED+C  FIEAHK CLR+EGFD+
Sbjct:   25 TCPETKKIRDECIVMNGEDKCLGFIEAHKQCLRAEGFDV 63
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BLAST of mRNA_H-elongata_contig56868.13140.1 vs. uniprot
Match: F4PHQ2_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PHQ2_CAVFA)

HSP 1 Score: 60.1 bits (144), Expect = 5.460e-11
Identity = 23/39 (58.97%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 SLPARLQARDDCVIMNGEDQCKEFIEAHKMCLRSEGFDI 117
            + P   + RD+C++ NGED+C +FIEAHK+CLR+EGFDI
Sbjct:   31 ACPETKKIRDECILQNGEDKCFQFIEAHKVCLRAEGFDI 69
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BLAST of mRNA_H-elongata_contig56868.13140.1 vs. uniprot
Match: D0NN32_PHYIT (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=D0NN32_PHYIT)

HSP 1 Score: 59.7 bits (143), Expect = 7.040e-11
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 SLPARLQARDDCVIMNGEDQCKEFIEAHKMCLRSEGFDI 117
            S P   QARD C++ NG+D+CK+ IEAHK CLRSEGF I
Sbjct:   26 SCPTTKQARDLCIVNNGQDKCKDIIEAHKACLRSEGFTI 64
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BLAST of mRNA_H-elongata_contig56868.13140.1 vs. uniprot
Match: A0A2A9ML35_9APIC (Putative copper chaperone COX17-1 n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9ML35_9APIC)

HSP 1 Score: 59.7 bits (143), Expect = 9.660e-11
Identity = 22/32 (68.75%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:   22 ARDDCVIMNGEDQCKEFIEAHKMCLRSEGFDI 117
            ARD+C+++NGE+ CK FIEAH  CLRSEGFD+
Sbjct:   46 ARDECIVLNGEENCKTFIEAHNQCLRSEGFDV 77
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BLAST of mRNA_H-elongata_contig56868.13140.1 vs. uniprot
Match: A0A3M6VF95_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VF95_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.000e-10
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 SLPARLQARDDCVIMNGEDQCKEFIEAHKMCLRSEGFDI 117
            S P   QARD CV+ NGE+ CK+ IEAHK CLRSEGF +
Sbjct:   26 SCPTTKQARDLCVVRNGEENCKDIIEAHKACLRSEGFTV 64
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BLAST of mRNA_H-elongata_contig56868.13140.1 vs. uniprot
Match: A0A8K1CGW3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGW3_PYTOL)

HSP 1 Score: 58.9 bits (141), Expect = 1.680e-10
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 SLPARLQARDDCVIMNGEDQCKEFIEAHKMCLRSEGFDI 117
            S P   +ARD CV+ NGE+ CKE IEAHK+CLRSEGF +
Sbjct:   33 SCPDTKKARDLCVVTNGEENCKELIEAHKICLRSEGFTV 71
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56868.13140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6Q6_ECTSI6.950e-1476.92COX17 homolog, cytochrome c oxidase assembly prote... [more]
A0A0P1B2C6_PLAHL1.480e-1271.79Cytochrome c oxidase copper chaperone n=1 Tax=Plas... [more]
A0A662WGN7_9STRA8.990e-1269.23Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
F0ZZA3_DICPU2.340e-1158.97Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
UPI000644844F3.320e-1158.97hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
F4PHQ2_CAVFA5.460e-1158.97Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
D0NN32_PHYIT7.040e-1164.10Uncharacterized protein n=14 Tax=Phytophthora TaxI... [more]
A0A2A9ML35_9APIC9.660e-1168.75Putative copper chaperone COX17-1 n=1 Tax=Besnoiti... [more]
A0A3M6VF95_9STRA1.000e-1064.10Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A8K1CGW3_PYTOL1.680e-1064.10Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56868contigH-elongata_contig56868:1730..1852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue2.3e-09
Seed eggNOG ortholog2880.D7G6Q6
Preferred nameCOX17
KEGG koko:K02260,ko:K11137,ko:K17822
KEGG Pathwayko00190,ko01100,ko03460,ko04150,ko04714,map00190,map01100,map03460,map04150,map04714
KEGG ModuleM00154
GOsGO:0000041,GO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005829,GO:0006091,GO:0006810,GO:0006811,GO:0006812,GO:0006825,GO:0006873,GO:0006875,GO:0006878,GO:0006996,GO:0007005,GO:0008047,GO:0008150,GO:0008152,GO:0008284,GO:0008535,GO:0009605,GO:0009607,GO:0009617,GO:0009893,GO:0009987,GO:0010035,GO:0010038,GO:0010155,GO:0015680,GO:0016043,GO:0016530,GO:0016531,GO:0017004,GO:0019222,GO:0019725,GO:0022607,GO:0022898,GO:0030001,GO:0030003,GO:0030234,GO:0031323,GO:0031325,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032879,GO:0033108,GO:0033617,GO:0034622,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0042127,GO:0042221,GO:0042592,GO:0043085,GO:0043167,GO:0043169,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043269,GO:0043270,GO:0043467,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046688,GO:0046872,GO:0046907,GO:0046914,GO:0046916,GO:0048518,GO:0048522,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051049,GO:0051050,GO:0051179,GO:0051234,GO:0051341,GO:0051353,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055082,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071840,GO:0098771,GO:0098772,GO:0140104,GO:1903136,GO:1904062,GO:1904064,GO:1904732,GO:1904734,GO:1904959,GO:1904960
EggNOG free text desc.copper chaperone activity
EggNOG OGsKOG3496@1,KOG3496@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03029,ko03032,ko03400,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionCOX17 homolog, cytochrome c oxidase assembly protein
Ec32 orthologEc-26_000510.1
Exons1
Model size123
Cds size123
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930924.4271517-CDS-H-elongata_contig56868:1729..18521622930924.4271517-CDS-H-elongata_contig56868:1729..1852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56868 1730..1852 +
1691679626.982009-CDS-H-elongata_contig56868:1729..18521691679626.982009-CDS-H-elongata_contig56868:1729..1852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56868 1730..1852 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56868.13140.1prot_H-elongata_contig56868.13140.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56868 1730..1852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56868.13140.1

>prot_H-elongata_contig56868.13140.1 ID=prot_H-elongata_contig56868.13140.1|Name=mRNA_H-elongata_contig56868.13140.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
SLPARLQARDDCVIMNGEDQCKEFIEAHKMCLRSEGFDIT*
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mRNA from alignment at H-elongata_contig56868:1730..1852+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56868.13140.1 ID=mRNA_H-elongata_contig56868.13140.1|Name=mRNA_H-elongata_contig56868.13140.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=123bp|location=Sequence derived from alignment at H-elongata_contig56868:1730..1852+ (Himanthalia elongata Himel1 dioecious)
TCCTTGCCCGCCCGCCTGCAGGCCCGAGATGATTGTGTTATCATGAACGG
AGAGGACCAATGTAAGGAATTCATCGAGGCGCACAAAATGTGTCTGCGTT
CGGAGGGCTTCGACATTACATAG
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Coding sequence (CDS) from alignment at H-elongata_contig56868:1730..1852+

>mRNA_H-elongata_contig56868.13140.1 ID=mRNA_H-elongata_contig56868.13140.1|Name=mRNA_H-elongata_contig56868.13140.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig56868:1730..1852+ (Himanthalia elongata Himel1 dioecious)
TCCTTGCCCGCCCGCCTGCAGGCCCGAGATGATTGTGTTATCATGAACGG
AGAGGACCAATGTAAGGAATTCATCGAGGCGCACAAAATGTGTCTGCGTT
CGGAGGGCTTCGACATTACATAGTCCTTGCCCGCCCGCCTGCAGGCCCGA
GATGATTGTGTTATCATGAACGGAGAGGACCAATGTAAGGAATTCATCGA
GGCGCACAAAATGTGTCTGCGTTCGGAGGGCTTCGACATTACATAG
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