mRNA_H-elongata_contig56860.13139.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56860.13139.1
Unique NamemRNA_H-elongata_contig56860.13139.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56860.13139.1 vs. uniprot
Match: D7FS42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS42_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 2.420e-15
Identity = 67/181 (37.02%), Postives = 88/181 (48.62%), Query Frame = 1 
Query:  700 CLRAVQMKVK--RKELADEVKITPQELDKICVDMVIKCGLGDSDYITKALRINVPRSGDNGQVTD-GKTMKRTSPGYNRAGADADASLATAMTTEKRLGIPESSLPASPENSDA---------PPGMLEKRLDFSRATTTGGPRNQAATTAA--DPTAPLSSLVKRLRKMESPRYDEWVQR 1200
            C+ +VQ K K  RK +A  VK+ P++LDKIC DMV KCG    ++  K  R+  P SGD GQ    GK  +  SP             ATA TT     +     PAS + S                EKR+DF  A   G   +   T AA  DP APL++ VKRL+++ES  Y EW ++
Sbjct:  160 CVASVQDKFKLDRKAVAAMVKLQPKDLDKICGDMVAKCGPSGLEHAAKVFRVETPGSGDRGQEAHKGKGKRPLSPRDRGXXXXXXXXPATATTTRLDELVDGDRSPASAQQSSGRXXXXXXXXXXXRTEKRIDFLEA---GRASSSVPTHAAVADPAAPLNAFVKRLQRLESKSYAEWCRQ 337
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56860.13139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS42_ECTSI2.420e-1537.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56860contigH-elongata_contig56860:586..3237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1249
Cds size519
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930924.2752783-UTR-H-elongata_contig56860:585..10131622930924.2752783-UTR-H-elongata_contig56860:585..1013Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56860 586..1013 -
1691679626.88869-UTR-H-elongata_contig56860:585..10131691679626.88869-UTR-H-elongata_contig56860:585..1013Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56860 586..1013 -
1622930924.3519654-UTR-H-elongata_contig56860:2372..24771622930924.3519654-UTR-H-elongata_contig56860:2372..2477Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56860 2373..2477 -
1691679626.9454572-UTR-H-elongata_contig56860:2372..24771691679626.9454572-UTR-H-elongata_contig56860:2372..2477Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56860 2373..2477 -
1622930924.3687701-UTR-H-elongata_contig56860:2752..28871622930924.3687701-UTR-H-elongata_contig56860:2752..2887Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56860 2753..2887 -
1691679626.9550257-UTR-H-elongata_contig56860:2752..28871691679626.9550257-UTR-H-elongata_contig56860:2752..2887Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56860 2753..2887 -
1622930924.386066-UTR-H-elongata_contig56860:3175..32371622930924.386066-UTR-H-elongata_contig56860:3175..3237Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56860 3176..3237 -
1691679626.9663584-UTR-H-elongata_contig56860:3175..32371691679626.9663584-UTR-H-elongata_contig56860:3175..3237Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56860 3176..3237 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930924.2942963-CDS-H-elongata_contig56860:1013..12221622930924.2942963-CDS-H-elongata_contig56860:1013..1222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56860 1014..1222 -
1691679626.8983796-CDS-H-elongata_contig56860:1013..12221691679626.8983796-CDS-H-elongata_contig56860:1013..1222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56860 1014..1222 -
1622930924.3127449-CDS-H-elongata_contig56860:1456..16851622930924.3127449-CDS-H-elongata_contig56860:1456..1685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56860 1457..1685 -
1691679626.9200253-CDS-H-elongata_contig56860:1456..16851691679626.9200253-CDS-H-elongata_contig56860:1456..1685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56860 1457..1685 -
1622930924.3340201-CDS-H-elongata_contig56860:1876..19571622930924.3340201-CDS-H-elongata_contig56860:1876..1957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56860 1877..1957 -
1691679626.9355042-CDS-H-elongata_contig56860:1876..19571691679626.9355042-CDS-H-elongata_contig56860:1876..1957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56860 1877..1957 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56860.13139.1prot_H-elongata_contig56860.13139.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56860 1014..1957 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56860.13139.1

>prot_H-elongata_contig56860.13139.1 ID=prot_H-elongata_contig56860.13139.1|Name=mRNA_H-elongata_contig56860.13139.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=173bp
MKVKRKELADEVKITPQELDKICVDMVIKCGLGDSDYITKALRINVPRSG
DNGQVTDGKTMKRTSPGYNRAGADADASLATAMTTEKRLGIPESSLPASP
ENSDAPPGMLEKRLDFSRATTTGGPRNQAATTAADPTAPLSSLVKRLRKM
ESPRYDEWVQRALQGTMESSGR*
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mRNA from alignment at H-elongata_contig56860:586..3237-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56860.13139.1 ID=mRNA_H-elongata_contig56860.13139.1|Name=mRNA_H-elongata_contig56860.13139.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2652bp|location=Sequence derived from alignment at H-elongata_contig56860:586..3237- (Himanthalia elongata Himel1 dioecious)
GGAAACTTGGGATTCCCATCTCCCGGGAGAAGCTCGTCAAAGCTGCGCAC
TCAAGAGAAAAGGTACAAGGTGCAAATGCTACGTAGACGGTATCTGAGAG
CGCCATGGCGTGTTGGTTCCTAAGCAGCGCGTAAAAGGCAGACACGTCCG
GCGCGAGTTCATAACCCCGTCGATTTGCCTCCAGTATATCTTGTAGCTGT
TTCTTTGTATAGTGAGCGACTCTCGTGCTGTTGTTGTAGGCATTCTAACT
TGAACAGCTGCGACCGAGACGAGGTGGAACCACCGTTTACGGTTTCAACC
TTAAACCTGGTACTCATCGGTGCCTGACAAACTCCTGTGTTCGACTGCAG
GCGTACGATACTGCCTATCGATACTTTCAAAACTTACTGGGCTCCCAAGT
CCAGGGATGCAAAATAGAGCACCTCGCGGTGAAGTTCCCTGGAGGAACTA
CTGAGCGTTCGAGGGCCCTGCTCAAGCTTTACCAGGTTTGGTCTTGCTTA
TAACAATATTAGTATTAATAGTCGGGTTGCTTCGTCTTGTCTCGTGTGAC
TGTCGTTGAAAAATATAGGAACTTCTAAGAGGTAAGTACGAACAGTTGAG
TCCGCCCCAGCGAAGAATAACAGTCAGCGAGTCAGTCCCCTGTGATGAGT
TTATCATTATATCTGGGGAGATAGTGAAACGGTACATCATAATACACTAG
GATTCATACATAATCCACTTTTCCTTCCGGTGGCCATTGCTGCAACTTTG
TTGTTACCAGGAGGTGTGCCGATCGACCGTGACCGTGGAGAAGAGTACTC
GCTTGGACTATAACACGCCAAGCTACCACGCGGCGGCCTTTCGTGTCGCA
ACGATCGAAGCCAAGGTACAATGCCCCCAAACACTTGAGTTCATAGCTGC
GAAAAATCCAGCGGCGAGGGGGATTGGCAATCGACATCCTGATGTGAAGT
GGTGGCGTATCTGACGAGTTGGCTTGGTGTGGCATCAAAATTTGCGCGAG
TTTTTTTCTTCTTGTTTTCTGCGGTAACTCCGGCGTCTCCGGCATCTCAC
CTGAGAAAAGATAGTGTTCGATCAGCTCCGGTGAAGTGCCTTGCTTAAGT
GTTCTTGCACTTTTGTTGTGGTTTGCCTCTAATTAATGCTTCGTGGCAGA
GAGAACCCTCCCACCTGAAGGGGACGAAAGCTGTGTGACCATATACATTC
TGTAGCTACGAAACTCATGTAACGTTTCATGTTGATGTATCGATATGGGA
CGGATATGGTCATGTTTACGGGCCGTGCAGATGAAAGTTAAACGGAAAGA
GCTAGCGGATGAGGTAAAAATAACCCCCCAAGAGCTCGACAAGATCTGCG
TCGATATGGTGGTGAGCGGATCGAGGTTTGAAATCTCGGCAGATCGAAAT
TTGCTGGATAATCTTGGCCTGTTGAGGACCGGTTGGCCTTTTCTCGTGGT
CTTTACGTACATGCAATAATGCGAAATACGACTCACAAGTAGTGGTTGCG
CAGGACATCCTTTGATTTCGAGCTAAATTCACCATACCCGTCCTTTTCGC
AGATAAAGTGCGGACTGGGTGACTCTGACTATATCACAAAGGCATTACGA
ATAAATGTCCCTCGCTCCGGAGACAACGGCCAAGTCACCGACGGGAAAAC
TATGAAGCGCACGTCCCCCGGATACAATCGAGCGGGGGCTGATGCTGATG
CATCTCTGGCGACGGCAATGACGACGGAGAAGCGGCTTGGGATACCGGAA
AGCTCTTTGCCAGCATCTCCCGAGAATTCAGGTGCTTCTACCTGATTTGC
CTCTGCGCGCATGGCTGTCTTCCCAGCTCCTTCTGTTGCGATCCACGGAA
AAATATGCAATATATTATACAAAAAGCCCCAAGCTGTTTTAGATTCTTGG
TGCGCCATTTGCAGGGCAGCTAGCCTTGCCCCGGGCACGTGCAATGTCTT
TCAACTGATACATATAATGTAAACATCTTAAACGGTTCGATCGTTTAATC
TGCGCGACATGCCAGACGCCCCCCCGGGGATGCTGGAGAAGCGCCTGGAT
TTCTCCAGAGCGACCACGACCGGTGGTCCCCGTAATCAAGCGGCGACGAC
AGCGGCCGACCCTACGGCGCCTTTGAGTAGCTTGGTGAAGCGTTTGAGAA
AGATGGAGTCCCCGCGTTACGACGAGTGGGTCCAGCGGGCTCTGCAAGGA
ACCATGGAATCTTCGGGTCGATGATATGGTTGTTGGGCCGGAGCGGCATT
TCACCCTGTTGCCACACGGGAAATTTCACTTCCGATATTTAGTTAGTGTT
GTATTTACACGCGCTGTCTTATCTCCATGGGGACCAAAGTCAGTCAAAGC
ATTACGAGAGCAGGGAGATTTGGCGACGGCTCCGCGTCTGCACTGCCTAC
CGTGTCAACTTTATCAGCCTATACTGTGCAAGGGATGGCTAAGCGGGCGC
TTTTACGATGACATACTCGTCTTAGTTTTTGTCCGGCTTCAGCCAAACGT
TATCAGGAGCTTAATCATTGAGTCCCTGAGTATTCGAGGGGCCACGGCTG
TCATGATCTAGCGCTTTTTATGCAATGAACTTGGAGGCCAAGGACGCCCA
TTGTGCGCGTGATGAAAATATAAAATATGCTCTGCTCAAAACGTTTTGTT
TG
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Coding sequence (CDS) from alignment at H-elongata_contig56860:586..3237-

>mRNA_H-elongata_contig56860.13139.1 ID=mRNA_H-elongata_contig56860.13139.1|Name=mRNA_H-elongata_contig56860.13139.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at H-elongata_contig56860:586..3237- (Himanthalia elongata Himel1 dioecious)
ATGAAAGTTAAACGGAAAGAGCTAGCGGATGAGGTAAAAATAACCCCCCA
AGAGCTCGACAAGATCTGCGTCGATATGGTGATGAAAGTTAAACGGAAAG
AGCTAGCGGATGAGGTAAAAATAACCCCCCAAGAGCTCGACAAGATCTGC
GTCGATATGGTGATAAAGTGCGGACTGGGTGACTCTGACTATATCACAAA
GGCATTACGAATAAATGTCCCTCGCTCCGGAGACAACGGCCAAGTCACCG
ACGGGAAAACTATGAAGCGCACGTCCCCCGGATACAATCGAGCGGGGGCT
GATGCTGATGCATCTCTGGCGACGGCAATGACGACGGAGAAGCGGCTTGG
GATACCGGAAAGCTCTTTGCCAGCATCTCCCGAGAATTCAGATAAAGTGC
GGACTGGGTGACTCTGACTATATCACAAAGGCATTACGAATAAATGTCCC
TCGCTCCGGAGACAACGGCCAAGTCACCGACGGGAAAACTATGAAGCGCA
CGTCCCCCGGATACAATCGAGCGGGGGCTGATGCTGATGCATCTCTGGCG
ACGGCAATGACGACGGAGAAGCGGCTTGGGATACCGGAAAGCTCTTTGCC
AGCATCTCCCGAGAATTCAGACGCCCCCCCGGGGATGCTGGAGAAGCGCC
TGGATTTCTCCAGAGCGACCACGACCGGTGGTCCCCGTAATCAAGCGGCG
ACGACAGCGGCCGACCCTACGGCGCCTTTGAGTAGCTTGGTGAAGCGTTT
GAGAAAGATGGAGTCCCCGCGTTACGACGAGTGGGTCCAGCGGGCTCTGC
AAGGAACCATGGAATCTTCGGGTCGATGAACGCCCCCCCGGGGATGCTGG
AGAAGCGCCTGGATTTCTCCAGAGCGACCACGACCGGTGGTCCCCGTAAT
CAAGCGGCGACGACAGCGGCCGACCCTACGGCGCCTTTGAGTAGCTTGGT
GAAGCGTTTGAGAAAGATGGAGTCCCCGCGTTACGACGAGTGGGTCCAGC
GGGCTCTGCAAGGAACCATGGAATCTTCGGGTCGATGA
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