mRNA_H-elongata_contig56857.13138.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56857.13138.1
Unique NamemRNA_H-elongata_contig56857.13138.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56857.13138.1 vs. uniprot
Match: D8LHR1_ECTSI (LTD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHR1_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 8.510e-45
Identity = 79/126 (62.70%), Postives = 94/126 (74.60%), Query Frame = 1 
Query:    4 SAIYVPSVSRGMLLPSLDIHCVVEEGDEPVDPTPPGSHWLFRPLPFISWADLRSETVIIRNPSVFKATSLSGYTLSDHQRLHTYAFPEVCTIPARSSITLYCCPGSKLSEGELATLPRTALLWKNQ 381
            +A +VPSV R +LLP LD H V EE D P DPTPPGSHWLFRP PFI+ ADL +ETV IRNPSV++  +L+GYTL+D  + HTY FPE   + AR+S+TLYCCPG K SEG L  LP+  LLW NQ
Sbjct:    4 AAFHVPSVPRSLLLPGLDTHQVQEEDDVPTDPTPPGSHWLFRPPPFIAHADLEAETVTIRNPSVWRGANLAGYTLTDRLQRHTYHFPERFVLRARTSLTLYCCPG-KFSEGALHNLPQPFLLWHNQ 128
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56857.13138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHR1_ECTSI8.510e-4562.70LTD domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56857contigH-elongata_contig56857:349..2111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.8
Seed ortholog evalue2.1e-37
Seed eggNOG ortholog2880.D8LHR1
EggNOG OGs28XRH@1,2R4IT@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size381
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56857.13138.1prot_H-elongata_contig56857.13138.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56857 349..2111 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930924.177786-CDS-H-elongata_contig56857:348..4281622930924.177786-CDS-H-elongata_contig56857:348..428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56857 349..428 -
1691679626.8552852-CDS-H-elongata_contig56857:348..4281691679626.8552852-CDS-H-elongata_contig56857:348..428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56857 349..428 -
1622930924.2123275-CDS-H-elongata_contig56857:911..10951622930924.2123275-CDS-H-elongata_contig56857:911..1095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56857 912..1095 -
1691679626.8661025-CDS-H-elongata_contig56857:911..10951691679626.8661025-CDS-H-elongata_contig56857:911..1095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56857 912..1095 -
1622930924.227912-CDS-H-elongata_contig56857:1994..21111622930924.227912-CDS-H-elongata_contig56857:1994..2111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56857 1995..2111 -
1691679626.8781557-CDS-H-elongata_contig56857:1994..21111691679626.8781557-CDS-H-elongata_contig56857:1994..2111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56857 1995..2111 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56857.13138.1

>prot_H-elongata_contig56857.13138.1 ID=prot_H-elongata_contig56857.13138.1|Name=mRNA_H-elongata_contig56857.13138.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MSAIYVPSVSRGMLLPSLDIHCVVEEGDEPVDPTPPGSHWLFRPLPFISW
ADLRSETVIIRNPSVFKATSLSGYTLSDHQRLHTYAFPEVCTIPARSSIT
LYCCPGSKLSEGELATLPRTALLWKNQ
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mRNA from alignment at H-elongata_contig56857:349..2111-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56857.13138.1 ID=mRNA_H-elongata_contig56857.13138.1|Name=mRNA_H-elongata_contig56857.13138.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1763bp|location=Sequence derived from alignment at H-elongata_contig56857:349..2111- (Himanthalia elongata Himel1 dioecious)
ATGTCGGCGATTTACGTGCCGTCGGTTTCTCGAGGCATGTTGCTCCCCAG
CCTGGACATCCATTGTGTCGTGGAGGAGGGCGACGAACCAGTCGACCCTA
CACCACCAGGATCGCATGTGAGTTCTTCCGAGAAAAGGCGAAGTGAGAAT
GAGAATAGCAAAACAGCTGTCTTGCGCTGTTGGACGGCGAAAGCTCTAGA
GTTGTTTCTTTGTCTTGATATTAAAATGAACCTGGTGGTCGACCATGGCG
GCAAAGAGCTCTATCAAATATACTTTCACTAGGTATTCAGGAGTACAGGA
CAATGTACATGTATCATTACAGCCAGCCAGTCGCTTTTCACATCAATTGG
TGGACTGCGCCGACTAATTCTCACCATTCTACTTAATTAATACTGTACTA
GTAGAACTGTACATGCTTTGGCCGTAAAACTTTGATTTTGACACAGGTCA
GACGACACTATGTCTCCTGTTGAACGCAGCAGTTGTACAGTATCTGAATA
CAATGCCTGTACAGTAATCGAGGATAGTGAGGGACTTGTTTCTCTGATTA
TTTCCTCCTCCAAACCTTCAAGCACTGCGCATTGTCAATAGCTGCAGTCC
TTCCACACAAGGACTTACCGAGACCCTAGTCCCTACCTGGTACAGTTGAA
GCTGTAGTGGAGGTCTAGAGCTATGCCTGTCCAATGTTATCAATACTTTA
CACCACAGCCAAAAAGTCGAACAAATTCGGTTAACGAGTAAAACGTATAC
TACTCCTGTTAAGGTGCCTCTAGAACATATATATATATATATATACATAT
CTGCAGTATAGAAAGTATCCTGTATACGGAACTCAGAGGCACGCGCGAAT
TGGAGTCCCCTGAGTCTCTCCGCGTCATGGTCTCGGCCGTTCGTCTTTGC
TTTTCCCAACCTTATCATACCCTATCTTACCCTACCCAAGTGTCCTATCT
AGACACCCTCTAATGTCCCCCCCTCTCTTATTGTGCGGCGCCTCTTTCTT
GGCTACGCTTGAGCAGTGGCTCTTCCGGCCTCTGCCCTTTATCTCCTGGG
CCGATCTGCGCTCCGAAACTGTCATAATTCGCAACCCATCCGTTTTCAAA
GCCACCAGCTTGAGCGGCTACACCTTGAGTGATCATCAGAGGCTACACAC
GTATGCTTTCCCTGAAGTTTGTACGATCCCCGCGCGGAGTTCCATCACAT
GTGAGTTGGCGTTTTCTATACTAACACATGAACGTTGTGCTTCGTATGCA
GCTTGTTGGTATTTCGTGGAGTCGTGCATAATTTCAGCCATGTTTTAGGG
ATGCAGCAAGTTTGGGACGCTCTAAGTAAAACACAATTAAATGTCCCCGG
TATATTGAAATTAATGGGAACCTTCGTTCTTGGCGGTTGTGGTAAATAGA
AAATAGTGCCGCACGAAACGGTTATTCAGTACTCTAGTAGCTCAAAATAT
CCTGGGCGTTCGGTGTCTTATTCTCCATGTGGATTGAGGCAGCGATCGGC
CTAGCGGGCAGAGATGTTCGTTTGAGAGAAGGTGTGACCTACCCCGGAGG
CCTTTGAAAGAACTAACACCCAGCAAGTCACCCCCCTACAACGCCTTACT
CATTAACACTAACCCTCCCCCCCATTGCGTGTATTTGTCTCTCACTGCCT
TGGATCACTTCCTTACCCGACTCGACCGAGCAGTGTACTGTTGTCCGGGA
AGTAAACTTTCGGAGGGCGAGCTCGCCACCCTTCCAAGAACCGCTCTGCT
CTGGAAGAATCAG
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Coding sequence (CDS) from alignment at H-elongata_contig56857:349..2111-

>mRNA_H-elongata_contig56857.13138.1 ID=mRNA_H-elongata_contig56857.13138.1|Name=mRNA_H-elongata_contig56857.13138.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig56857:349..2111- (Himanthalia elongata Himel1 dioecious)
ATGTCGGCGATTTACGTGCCGTCGGTTTCTCGAGGCATGTTGCTCCCCAG
CCTGGACATCCATTGTGTCGTGGAGGAGGGCGACGAACCAGTCGACCCTA
CACCACCAGGATCGCATATGTCGGCGATTTACGTGCCGTCGGTTTCTCGA
GGCATGTTGCTCCCCAGCCTGGACATCCATTGTGTCGTGGAGGAGGGCGA
CGAACCAGTCGACCCTACACCACCAGGATCGCATTGGCTCTTCCGGCCTC
TGCCCTTTATCTCCTGGGCCGATCTGCGCTCCGAAACTGTCATAATTCGC
AACCCATCCGTTTTCAAAGCCACCAGCTTGAGCGGCTACACCTTGAGTGA
TCATCAGAGGCTACACACGTATGCTTTCCCTGAAGTTTGTACGATCCCCG
CGCGGAGTTCCATCACATTGGCTCTTCCGGCCTCTGCCCTTTATCTCCTG
GGCCGATCTGCGCTCCGAAACTGTCATAATTCGCAACCCATCCGTTTTCA
AAGCCACCAGCTTGAGCGGCTACACCTTGAGTGATCATCAGAGGCTACAC
ACGTATGCTTTCCCTGAAGTTTGTACGATCCCCGCGCGGAGTTCCATCAC
ATTGTACTGTTGTCCGGGAAGTAAACTTTCGGAGGGCGAGCTCGCCACCC
TTCCAAGAACCGCTCTGCTCTGGAAGAATCAGTGTACTGTTGTCCGGGAA
GTAAACTTTCGGAGGGCGAGCTCGCCACCCTTCCAAGAACCGCTCTGCTC
TGGAAGAATCAG
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