mRNA_H-elongata_contig56792.13129.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56792.13129.1
Unique NamemRNA_H-elongata_contig56792.13129.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig56792.13129.1 vs. uniprot
Match: D7G0W9_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0W9_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 6.510e-58
Identity = 94/112 (83.93%), Postives = 101/112 (90.18%), Query Frame = 1
Query:    1 RVVTGTGIMGGDVEGAGGARSHSAF-GSRFFPDEAFFIPHSAPGLLTTANPGVHSNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALHGMYSIRGKPVSEITVARCGEI 333
            RVVTGTGIMGGDVEG GG RSHSAF G RFFPDEAF IPH+APGLLT AN G+H+NGSQFYITTE AGHLDGRSVAFGRVT G+EVVRA++GMYSIRGKPVSEIT+  CGEI
Sbjct:  173 RVVTGTGIMGGDVEGYGGKRSHSAFSGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEECGEI 284          
BLAST of mRNA_H-elongata_contig56792.13129.1 vs. uniprot
Match: A0A836C8D9_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8D9_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.460e-39
Identity = 63/104 (60.58%), Postives = 80/104 (76.92%), Query Frame = 1
Query:   13 GTGIMGGDVEGAGGARSHSAFGSRFFPDEAFFIPHSAPGLLTTANPGVHSNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALHGMYSIRGKPVSEITVARC 324
            G G+MGGDVEG  G +SHS  G R+F DE FFIPHS+ GLLT AN G+ +NGSQFY+T  PA H+DGRSVAFGRV  GM+VVR + G++S++ KPVS++ +  C
Sbjct:  121 GVGLMGGDVEGGNGKKSHSGLGKRYFRDEGFFIPHSSEGLLTMANSGIDTNGSQFYVTIGPAPHMDGRSVAFGRVVGGMDVVRRVFGLFSVKAKPVSKVVITDC 224          
BLAST of mRNA_H-elongata_contig56792.13129.1 vs. uniprot
Match: F0Y6J0_AURAN (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6J0_AURAN)

HSP 1 Score: 121 bits (303), Expect = 1.260e-32
Identity = 63/113 (55.75%), Postives = 81/113 (71.68%), Query Frame = 1
Query:    1 RVVTGTGIMGGDVEGAGGARSHSAF-GSRFFPDEAFFIPHSAPGLLTTANPGVHSNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALHG-MYSIRGKPVSEITVARCGEI 333
            RVV G G++GG V+  GG  SHSAF G R F DE FF+PH+ PGLL+ AN GV +NGSQFY+TT  A H+DGR VAFGRV +G++VV+ L   +Y+ RG PV  + +A CG +
Sbjct:   54 RVVKGVGLLGGVVDAPGG--SHSAFAGRRVFADEGFFVPHAEPGLLSMANAGVDTNGSQFYLTTAAAPHMDGRCVAFGRVAAGLDVVQTLADTLYTQRGVPVEHVEIAACGTL 164          
BLAST of mRNA_H-elongata_contig56792.13129.1 vs. uniprot
Match: A0A7S4EDH8_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDH8_9STRA)

HSP 1 Score: 119 bits (299), Expect = 2.590e-31
Identity = 63/113 (55.75%), Postives = 78/113 (69.03%), Query Frame = 1
Query:    1 RVVTGTGIMGGDVEGAGGARSHSAFGSR-FFPDEAFFIPHSAPGLLTTANPGVHSNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALH-GMYSIRGKPVSEITVARCGEI 333
            RVV G G++GG +  A G  S SAF  R  F DE FF+PH+ PGLLT A+ GV  NGSQFY+T EPA HLDGR VAFGR+  G++VVR LH  +Y+ RG PV ++ V  CG +
Sbjct:  112 RVVKGVGLLGGALPDAPGG-SRSAFADRPLFADEGFFVPHAEPGLLTMASSGVDGNGSQFYVTIEPAPHLDGRCVAFGRLVEGLDVVRHLHDSLYTQRGVPVEKVVVEACGVV 223          
BLAST of mRNA_H-elongata_contig56792.13129.1 vs. uniprot
Match: A0A7S2BM91_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BM91_9STRA)

HSP 1 Score: 119 bits (299), Expect = 8.610e-31
Identity = 61/114 (53.51%), Postives = 80/114 (70.18%), Query Frame = 1
Query:    4 VVTGTGIMGGDVEGAGGARSHSAFGSRFFPDEAFFIPHSAPGLLTTANPGVHSNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALHGMYSIRGKPVSEITVARCGEIGQTG 345
            VV  + I+ GDVE   G  SHSA G+R+F DEA  +PH+  G+++  N GV +NGSQFYITT P+  LDG SVAFGRVTSGM+VV ++  ++SIRG PVS +TV   G + + G
Sbjct:  156 VVKDSAIVAGDVELKTGKGSHSALGTRYFDDEALVMPHTEAGIVSMVNGGVDTNGSQFYITTAPSPQLDGYSVAFGRVTSGMDVVGSITNLFSIRGVPVSTVTVTAAGVLREGG 269          
BLAST of mRNA_H-elongata_contig56792.13129.1 vs. uniprot
Match: W7TUT6_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUT6_9STRA)

HSP 1 Score: 117 bits (293), Expect = 5.660e-30
Identity = 61/124 (49.19%), Postives = 77/124 (62.10%), Query Frame = 1
Query:    1 RVVTGTGIMGGDVEGA---------------GGARSHSAFGSRFFPDEAFFIPHSAPGLLTTANPGVHSNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALHGMYSIRGKPVSEITVARCG 327
            RVV G GI+GGD+  A               GGA +HS  G RFFPDE+F IPH+ PGLL+  + G H NGS F+I+T    HLDGRSV FGRV  G+EV+ A+   Y+IRG+PV+ + V   G
Sbjct:  140 RVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAG 263          
BLAST of mRNA_H-elongata_contig56792.13129.1 vs. uniprot
Match: A0A4D9CP74_9STRA (PPIase cyclophilin-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CP74_9STRA)

HSP 1 Score: 117 bits (293), Expect = 4.700e-29
Identity = 61/124 (49.19%), Postives = 77/124 (62.10%), Query Frame = 1
Query:    1 RVVTGTGIMGGDVEGA---------------GGARSHSAFGSRFFPDEAFFIPHSAPGLLTTANPGVHSNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALHGMYSIRGKPVSEITVARCG 327
            RVV G GI+GGD+  A               GGA +HS  G RFFPDE+F IPH+ PGLL+  + G H NGS F+I+T    HLDGRSV FGRV  G+EV+ A+   Y+IRG+PV+ + V   G
Sbjct:  255 RVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAG 378          
BLAST of mRNA_H-elongata_contig56792.13129.1 vs. uniprot
Match: A0A024TP67_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TP67_9STRA)

HSP 1 Score: 108 bits (270), Expect = 4.340e-27
Identity = 47/102 (46.08%), Postives = 74/102 (72.55%), Query Frame = 1
Query:   22 IMGGDVEGAGGARSHSAFGSRFFPDEAFFIPHSAPGLLTTANPGVHSNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALHGMYSIRGKPVSEITVARCG 327
            + GGD+    G    +A G+R+F DE F + ++ PG++  AN GV++NGSQF+IT++P  HL+GR+VAFG+V  G++VVR +  +YS++GKP++E+ V  CG
Sbjct:  110 VSGGDITHGNGQGGMTASGARYFDDENFALRYTEPGVVGMANSGVNTNGSQFFITSKPMPHLNGRNVAFGKVVDGLDVVRKIENVYSVKGKPLTEVVVVDCG 211          
BLAST of mRNA_H-elongata_contig56792.13129.1 vs. uniprot
Match: W4G7R5_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G7R5_9STRA)

HSP 1 Score: 105 bits (263), Expect = 4.520e-26
Identity = 48/102 (47.06%), Postives = 72/102 (70.59%), Query Frame = 1
Query:   22 IMGGDVEGAGGARSHSAFGSRFFPDEAFFIPHSAPGLLTTANPGVHSNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALHGMYSIRGKPVSEITVARCG 327
            + GGD+    G    +A G+R F DE F + ++  G+L  AN GV++NGSQF+IT++P  HL+GR+VAFG+V  GM+VVR +  +YS++GKP+++I V  CG
Sbjct:  107 VTGGDITAGNGKGGVTASGARHFDDENFALRYTEAGVLGMANSGVNTNGSQFFITSKPMPHLNGRNVAFGKVVEGMDVVRKIENVYSVKGKPLTDIVVVDCG 208          
BLAST of mRNA_H-elongata_contig56792.13129.1 vs. uniprot
Match: A0A7S1CQB8_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQB8_9STRA)

HSP 1 Score: 103 bits (256), Expect = 5.770e-26
Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    1 RVVTGTGIMGGDVEGAGGARSHSAFGSRFFPDEAFFIPHSAPGLLTTANPGVHSNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALHGMYSIRGKPVSEITVARCGE 330
            +VV G  ++GGDVE   G+  HSA G RFF DE F   H+  G+L+ AN G  +N SQF +T +    LDGR+VAFGRV  G+E++  +  ++++ GKPV+++ +  CGE
Sbjct:   17 KVVKGFVVVGGDVEAGDGSGGHSALGERFFEDENFGGRHTTRGVLSMANAGADANSSQFLVTGDAMPQLDGRNVAFGRVVDGLELLDEVEEVFTVNGKPVTDVRITDCGE 126          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56792.13129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0W9_ECTSI6.510e-5883.93Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectoca... [more]
A0A836C8D9_9STRA1.460e-3960.58Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
F0Y6J0_AURAN1.260e-3255.75Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A7S4EDH8_9STRA2.590e-3155.75Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pelago... [more]
A0A7S2BM91_9STRA8.610e-3153.51Peptidyl-prolyl cis-trans isomerase n=1 Tax=Floren... [more]
W7TUT6_9STRA5.660e-3049.19Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannoc... [more]
A0A4D9CP74_9STRA4.700e-2949.19PPIase cyclophilin-type domain-containing protein ... [more]
A0A024TP67_9STRA4.340e-2746.08Peptidyl-prolyl cis-trans isomerase n=2 Tax=Aphano... [more]
W4G7R5_9STRA4.520e-2647.06Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aphano... [more]
A0A7S1CQB8_9STRA5.770e-2644.55Peptidyl-prolyl cis-trans isomerase n=1 Tax=Bicoso... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56792contigH-elongata_contig56792:2111..2926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score175.3
Seed ortholog evalue1.7e-41
Seed eggNOG ortholog2880.D7G0W9
KEGG koko:K01802,ko:K05864,ko:K20097
KEGG Pathwayko04217,ko04218,map04217,map04218
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0546@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110
Hectar predicted targeting categoryother localisation
Exons2
Model size363
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56792.13129.1prot_H-elongata_contig56792.13129.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56792 2135..2926 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930922.9879918-UTR-H-elongata_contig56792:2110..21341622930922.9879918-UTR-H-elongata_contig56792:2110..2134Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56792 2111..2134 +
1691679626.2727177-UTR-H-elongata_contig56792:2110..21341691679626.2727177-UTR-H-elongata_contig56792:2110..2134Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56792 2111..2134 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930923.0061421-CDS-H-elongata_contig56792:2134..22291622930923.0061421-CDS-H-elongata_contig56792:2134..2229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56792 2135..2229 +
1691679626.2821727-CDS-H-elongata_contig56792:2134..22291691679626.2821727-CDS-H-elongata_contig56792:2134..2229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56792 2135..2229 +
1622930923.0241463-CDS-H-elongata_contig56792:2682..29261622930923.0241463-CDS-H-elongata_contig56792:2682..2926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56792 2683..2926 +
1691679626.2900364-CDS-H-elongata_contig56792:2682..29261691679626.2900364-CDS-H-elongata_contig56792:2682..2926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56792 2683..2926 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56792.13129.1

>prot_H-elongata_contig56792.13129.1 ID=prot_H-elongata_contig56792.13129.1|Name=mRNA_H-elongata_contig56792.13129.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MGGDVEGAGGARSHSAFGSRFFPDEAFFIPHSAPGLLTTANPGVHSNGSQ
FYITTEPAGHLDGRSVAFGRVTSGMEVVRALHGMYSIRGKPVSEITVARC
GEIGQTGANVTP*
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mRNA from alignment at H-elongata_contig56792:2111..2926+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56792.13129.1 ID=mRNA_H-elongata_contig56792.13129.1|Name=mRNA_H-elongata_contig56792.13129.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=816bp|location=Sequence derived from alignment at H-elongata_contig56792:2111..2926+ (Himanthalia elongata Himel1 dioecious)
CGGGTGGTTACAGGCACCGGGATCATGGGCGGTGACGTTGAAGGGGCTGG CGGCGCGCGGAGCCACTCGGCATTTGGCTCGCGCTTCTTCCCCGATGAGG CTTTCTTCATCCCACACTCGTAAGGAGCCATACGACAGACATCGATGTCT GTAGCATATACGGTACCGGACGCCGCGCGTCGATCAATATGTATGTAGTA TATGGTGTATACAGTACGCGGTTCGATGGCTACGCCGACCGTCACTAGGT CTATATGAAACACATCCAACACAAAGAACAGCGTTTCGAAGATTTGAAAG AGCGTCGGTGTGTGATCTTCTCCTACACTCCAACGCAGCAAAACCGCGTT GCAAATGGATCAAAAACATACCATGACTGCAGCAGTTGCCACAGTCGTAT CAAAAGCAGCGGGCACTTCTCTTAAAATACTGTAAATATATGTCTCAGGA TTGCTAGTGTTTCCAACGGCATCTTTGTTGTCCCAGGCGACACAGAAACA CGGAGGTATTGCTTGATGTACGATGTTCTCCACCCTCGCTTGACCATTTC CGCCGAGCTTTGTTCACTCCAGCGCGCCTGGCCTACTCACCACGGCCAAC CCTGGCGTCCACAGCAATGGATCCCAGTTCTACATTACGACGGAGCCGGC TGGACATCTTGACGGTCGATCGGTCGCCTTTGGAAGAGTGACTTCGGGGA TGGAGGTTGTTCGAGCGCTGCACGGGATGTACAGTATTAGGGGTAAGCCA GTTTCGGAGATAACTGTGGCAAGATGTGGAGAAATTGGACAGACCGGGGC AAATGTAACGCCCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig56792:2111..2926+

>mRNA_H-elongata_contig56792.13129.1 ID=mRNA_H-elongata_contig56792.13129.1|Name=mRNA_H-elongata_contig56792.13129.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig56792:2111..2926+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGGTGACGTTGAAGGGGCTGGCGGCGCGCGGAGCCACTCGGCATT
TGGCTCGCGCTTCTTCCCCGATGAGGCTTTCTTCATCCCACACTCATGGG
CGGTGACGTTGAAGGGGCTGGCGGCGCGCGGAGCCACTCGGCATTTGGCT
CGCGCTTCTTCCCCGATGAGGCTTTCTTCATCCCACACTCCGCGCCTGGC
CTACTCACCACGGCCAACCCTGGCGTCCACAGCAATGGATCCCAGTTCTA
CATTACGACGGAGCCGGCTGGACATCTTGACGGTCGATCGGTCGCCTTTG
GAAGAGTGACTTCGGGGATGGAGGTTGTTCGAGCGCTGCACGGGATGTAC
AGTATTAGGGGTAAGCCAGTTTCGGAGATAACTGTGGCAAGATGTGGAGA
AATTGGACAGACCGGGGCAAATGTAACGCCCTAACGCGCCTGGCCTACTC
ACCACGGCCAACCCTGGCGTCCACAGCAATGGATCCCAGTTCTACATTAC
GACGGAGCCGGCTGGACATCTTGACGGTCGATCGGTCGCCTTTGGAAGAG
TGACTTCGGGGATGGAGGTTGTTCGAGCGCTGCACGGGATGTACAGTATT
AGGGGTAAGCCAGTTTCGGAGATAACTGTGGCAAGATGTGGAGAAATTGG
ACAGACCGGGGCAAATGTAACGCCCTAA
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