mRNA_H-elongata_contig56787.13127.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56787.13127.1
Unique NamemRNA_H-elongata_contig56787.13127.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig56787.13127.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 6.900e-54
Identity = 96/163 (58.90%), Postives = 113/163 (69.33%), Query Frame = 1
Query:    1 WDWCDCHLATEAAEHAFGTSADPQKSKNPGARSIFTLITKTAARVNESVSFKQKFEELQLDMLDEVLKITKHSNHRWLSMVRTLKHIIRLWH----------------KDDNKNTVLQLYSILQLLSAITRDGQSSDVPMTTEMHMAFAALKMEVLDPSKPLQ 441
            WDWC CHLA  AAE AFGTSADPQK KN  AR +  L+ K AA+VN+S  FKQKF+E QL M  EVLKI KH+  RWLS+VR ++ IIRLWH                K DNK+ +LQLYS+L+ L+AITRDGQ   VPM+ EMHMAFA LK E LDP+ PL+
Sbjct:  341 WDWCVCHLADRAAEQAFGTSADPQKPKNKDARGVVQLVIKAAAKVNQSPIFKQKFDEAQLQMTGEVLKIRKHAPQRWLSLVRVMERIIRLWHVLRKVYANDGVEFPLDKGDNKDNILQLYSLLRPLAAITRDGQYGAVPMSAEMHMAFAELKQEGLDPTGPLK 503          
BLAST of mRNA_H-elongata_contig56787.13127.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 2.520e-53
Identity = 88/153 (57.52%), Postives = 112/153 (73.20%), Query Frame = 1
Query:    1 WDWCDCHLATEAAEHAFGTSADPQKSKNPGARSIFTLITKTAARVNESVSFKQKFEELQLDMLDEVLKITKHSNHRWLSMVRTLKHIIRLWH----------------KDDNKNTVLQLYSILQLLSAITRDGQSSDVPMTTEMHMAFAALKM 411
            WDWCDCHLA ++AE+ FGTSADPQ+SKN  AR +  L+ KTAA++N+S   KQKFE++ L+MLDE+LKITKH+  RWLS+V  ++ IIRLWH                K +N++ +LQLYS+LQ LSAITRDGQ  + PMT EMH+AFA LKM
Sbjct:  322 WDWCDCHLADKSAENTFGTSADPQQSKNKIARDVIKLVIKTAAKINQSTIVKQKFEKVTLEMLDEILKITKHAPQRWLSLVLVMERIIRLWHVLRKVYANDGEEFPLDKGNNRDDILQLYSLLQPLSAITRDGQYGNAPMTAEMHLAFAQLKM 474          
BLAST of mRNA_H-elongata_contig56787.13127.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 1.610e-52
Identity = 90/147 (61.22%), Postives = 111/147 (75.51%), Query Frame = 1
Query:    1 WDWCDCHLATEAAEHAFGTSADPQKSKNPGARSIFTLITKTAARVNESVSFKQKFEELQLDMLDEVLKITKHSNHRWLSMVRTLKHIIRLWHKDDNKNTVLQLYSILQLLSAITRDGQSSDVPMTTEMHMAFAALKMEVLDPSKPLQ 441
            WDWC CHLA  AAE AFGTSADPQKSKN  AR + +LI K AA+VN+S  FKQKF+E Q++ML E LKI++H+  RWLS+VR ++ IIRLWH       + +L+S+LQ L+ ITRDGQ   VPMT EMHMAFA LK E+LDP +PL+
Sbjct:  146 WDWCVCHLADRAAEAAFGTSADPQKSKNKDARQVVSLIIKAAAKVNQSPIFKQKFDEAQMEMLGETLKISRHAPQRWLSLVRVIERIIRLWH------VLRKLFSLLQPLAVITRDGQYGAVPMTAEMHMAFAELKKELLDPDEPLK 286          
BLAST of mRNA_H-elongata_contig56787.13127.1 vs. uniprot
Match: A0A6H5KEE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE6_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 6.010e-48
Identity = 82/163 (50.31%), Postives = 106/163 (65.03%), Query Frame = 1
Query:    1 WDWCDCHLATEAAEHAFGTSADPQKSKNPGARSIFTLITKTAARVNESVSFKQKFEELQLDMLDEVLKITKHSNHRWLSMVRTLKHIIRLWH----------------KDDNKNTVLQLYSILQLLSAITRDGQSSDVPMTTEMHMAFAALKMEVLDPSKPLQ 441
            W+WC CHL  +AAE  FGT  DPQKSKNP AR +   +      +N S +FK KFE+LQ+D+L +VLKI   +  RWL+ VRTL+ +IRLWH                + DNKN +LQL+S+LQ LS++TRDGQ  + PM  ++ M F  LKMEVLDPSKPL+
Sbjct:   74 WNWCFCHLMVKAAEDGFGTHVDPQKSKNPEARDMLKNVISMVGTLNRSSNFKAKFEDLQVDLLGDVLKIPNQAPQRWLTQVRTLERVIRLWHVLRKLYSDAGKNFPLEEGDNKNAILQLFSLLQSLSSVTRDGQYGNAPMQADVFMKFGELKMEVLDPSKPLK 236          
BLAST of mRNA_H-elongata_contig56787.13127.1 vs. uniprot
Match: A0A6H5L8D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D8_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 1.640e-43
Identity = 76/163 (46.63%), Postives = 103/163 (63.19%), Query Frame = 1
Query:    1 WDWCDCHLATEAAEHAFGTSADPQKSKNPGARSIFTLITKTAARVNESVSFKQKFEELQLDMLDEVLKITKHSNHRWLSMVRTLKHIIRLWH----------------KDDNKNTVLQLYSILQLLSAITRDGQSSDVPMTTEMHMAFAALKMEVLDPSKPLQ 441
            W+WC CHL  +AAE  FGT  DPQKSKNP AR +   +      ++ S +FK KF++LQ+D+L EVLKI   +  RWL++VRTL+ +IRLWH                + DNK+ +LQLYS+LQ  S++TRDGQ    PM  +++M    LKM VLDPS+ L+
Sbjct:  125 WNWCFCHLMVKAAEDGFGTHVDPQKSKNPEARDMLKKLINLVGTLHRSSNFKAKFDDLQVDVLGEVLKIPNQAPKRWLTLVRTLERVIRLWHVLRKLYSDTGKTFPLEEGDNKDCILQLYSLLQPPSSVTRDGQYGGAPMLADIYMKCGMLKMRVLDPSEELK 287          
BLAST of mRNA_H-elongata_contig56787.13127.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 2.000e-43
Identity = 79/163 (48.47%), Postives = 102/163 (62.58%), Query Frame = 1
Query:    1 WDWCDCHLATEAAEHAFGTSADPQKSKNPGARSIFTLITKTAARVNESVSFKQKFEELQLDMLDEVLKITKHSNHRWLSMVRTLKHIIRLWH----------------KDDNKNTVLQLYSILQLLSAITRDGQSSDVPMTTEMHMAFAALKMEVLDPSKPLQ 441
            W WC CHL  +AAE A+G   DP KSKNP AR I   + K    +N+S +FK KFE+LQ+DML E+ K+ KH+  RWLS+ RT++  IRLWH                + D K+ +LQLYS+LQ LS+ITRDGQ  D PM  ++ M F  L  +VLDPSK L+
Sbjct:  358 WCWCFCHLMVKAAEQAYGIHLDPAKSKNPQARDILKKVVKVVENLNKSPNFKAKFEDLQVDMLGEIFKMVKHAPQRWLSLTRTVERTIRLWHVLRKLYSDEGRNFPLEEGDTKDAILQLYSLLQPLSSITRDGQYGDAPMMADIFMKFGMLNTDVLDPSKDLK 520          
BLAST of mRNA_H-elongata_contig56787.13127.1 vs. uniprot
Match: A0A6H5KS21_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS21_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 1.450e-38
Identity = 69/152 (45.39%), Postives = 96/152 (63.16%), Query Frame = 1
Query:    1 WDWCDCHLATEAAEHAFGTSADPQKSKNPGARSIFTLITKTAARVNESVSFKQKFEELQLDMLDEVLKITKHSNHRWLSMVRTLKHIIRLWH----------------KDDNKNTVLQLYSILQLLSAITRDGQSSDVPMTTEMHMAFAALK 408
            W+WC CHL  +AAE AFGT  DPQKSKNP  R +   +      +++S +   KFE++Q+D+L E+LKI   +  RWL++VRTL+ +IRLWH                + DNK+ +LQLYS+LQ LS++TRDGQ   VPM  +++M F  LK
Sbjct:  271 WNWCCCHLMVKAAEDAFGTHPDPQKSKNPEGRKMLKNVIGMVGTLHKSPNLTAKFEDVQVDLLGEILKIPNQAPQRWLTLVRTLERVIRLWHVLRKLHSDAGKTFPLEEGDNKDCILQLYSLLQPLSSVTRDGQYGGVPMMADIYMKFGMLK 422          
BLAST of mRNA_H-elongata_contig56787.13127.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 1.540e-38
Identity = 72/163 (44.17%), Postives = 104/163 (63.80%), Query Frame = 1
Query:    1 WDWCDCHLATEAAEHAFGTSADPQKSKNPGARSIFTLITKTAARVNESVSFKQKFEELQLDMLDEVLKITKHSNHRWLSMVRTLKHIIRLWH----------------KDDNKNTVLQLYSILQLLSAITRDGQSSDVPMTTEMHMAFAALKMEVLDPSKPLQ 441
            W+WC CHL  +AAE AFGT  DPQKSKNP A ++   +      +++S++   KFE+LQ+D+L EVLKI   +  RWL++VRT++ +IRLWH                + DNK+ + QLYS+LQ LS++TRDGQ   +PM  ++++ F  LKM VL+ S  L+
Sbjct:  114 WNWCYCHLMIKAAEDAFGTHPDPQKSKNPEAHNMLKNLIGIVGTLHKSLNLTAKFEDLQVDLLGEVLKIPNQAPQRWLTLVRTMERVIRLWHVLRKLYSDAGKNFILEEGDNKDCIPQLYSLLQSLSSVTRDGQYGGLPMLADIYIKFGMLKMGVLNSSADLK 276          
BLAST of mRNA_H-elongata_contig56787.13127.1 vs. uniprot
Match: A0A6H5JZ66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ66_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 8.850e-36
Identity = 71/163 (43.56%), Postives = 101/163 (61.96%), Query Frame = 1
Query:    1 WDWCDCHLATEAAEHAFGTSADPQKSKNPGARSIFTLITKTAARVNESVSFKQKFEELQLDMLDEVLKITKHSNHRWLSMVRTLKHIIRLWH----------------KDDNKNTVLQLYSILQLLSAITRDGQSSDVPMTTEMHMAFAALKMEVLDPSKPLQ 441
            W+WC CHL  +AAE AFGT  DPQ SKNP AR++   +      +++S +   KFE+LQ+D+L EVL I   +  RWL++VRT++ +IRLW                 + DNK+ + QLYS+LQ LS++TRDGQ   +PM  +++M F  LKM VL+ S  L+
Sbjct:  106 WNWCYCHLMVKAAEDAFGTRPDPQMSKNPEARNMLKNLIGIIGTLHKS-NLTAKFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSVTRDGQYGGLPMLADIYMKFGMLKMGVLNSSADLK 267          
BLAST of mRNA_H-elongata_contig56787.13127.1 vs. uniprot
Match: A0A6H5K0P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P1_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 4.610e-35
Identity = 71/163 (43.56%), Postives = 101/163 (61.96%), Query Frame = 1
Query:    1 WDWCDCHLATEAAEHAFGTSADPQKSKNPGARSIFTLITKTAARVNESVSFKQKFEELQLDMLDEVLKITKHSNHRWLSMVRTLKHIIRLWH----------------KDDNKNTVLQLYSILQLLSAITRDGQSSDVPMTTEMHMAFAALKMEVLDPSKPLQ 441
            W+WC CHL  +AAE AFGT  DPQ SKNP AR++   +      +++S +   KFE+LQ+D+L EVL I   +  RWL++VRT++ +IRLW                 + DNK+ + QLYS+LQ LS++TRDGQ   +PM  +++M F  LKM VL+ S  L+
Sbjct:  235 WNWCYCHLMVKAAEDAFGTRPDPQMSKNPEARNMLKNLIGIIGTLHKS-NLTAKFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSVTRDGQYGGLPMLADIYMKFGMLKMGVLNSSADLK 396          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56787.13127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5L1G0_9PHAE6.900e-5458.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYQ2_9PHAE2.520e-5357.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ46_9PHAE1.610e-5261.22Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KEE6_9PHAE6.010e-4850.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8D8_9PHAE1.640e-4346.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJJ9_9PHAE2.000e-4348.47Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KS21_9PHAE1.450e-3845.39Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JB08_9PHAE1.540e-3844.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ66_9PHAE8.850e-3643.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0P1_9PHAE4.610e-3543.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56787contigH-elongata_contig56787:120..608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue3.2e-08
Seed eggNOG ortholog4787.PITG_00364T0
EggNOG OGs2CZK4@1,2SARG@2759,3QH9R@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size441
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930922.7528484-CDS-H-elongata_contig56787:119..3951622930922.7528484-CDS-H-elongata_contig56787:119..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56787 120..395 +
1691679626.184167-CDS-H-elongata_contig56787:119..3951691679626.184167-CDS-H-elongata_contig56787:119..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56787 120..395 +
1622930922.7735255-CDS-H-elongata_contig56787:443..6081622930922.7735255-CDS-H-elongata_contig56787:443..608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56787 444..608 +
1691679626.1937528-CDS-H-elongata_contig56787:443..6081691679626.1937528-CDS-H-elongata_contig56787:443..608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56787 444..608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56787.13127.1prot_H-elongata_contig56787.13127.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56787 120..608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56787.13127.1

>prot_H-elongata_contig56787.13127.1 ID=prot_H-elongata_contig56787.13127.1|Name=mRNA_H-elongata_contig56787.13127.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
WDWCDCHLATEAAEHAFGTSADPQKSKNPGARSIFTLITKTAARVNESVS
FKQKFEELQLDMLDEVLKITKHSNHRWLSMVRTLKHIIRLWHKDDNKNTV
LQLYSILQLLSAITRDGQSSDVPMTTEMHMAFAALKMEVLDPSKPLQ
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mRNA from alignment at H-elongata_contig56787:120..608+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56787.13127.1 ID=mRNA_H-elongata_contig56787.13127.1|Name=mRNA_H-elongata_contig56787.13127.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=489bp|location=Sequence derived from alignment at H-elongata_contig56787:120..608+ (Himanthalia elongata Himel1 dioecious)
TGGGATTGGTGTGACTGCCATCTTGCCACCGAGGCCGCCGAGCATGCCTT TGGCACCTCGGCGGACCCCCAGAAGTCCAAGAACCCGGGCGCCCGCAGCA TCTTCACCCTCATCACCAAGACCGCAGCAAGGGTCAATGAATCTGTCTCC TTTAAGCAGAAATTCGAGGAGCTCCAGCTGGACATGCTCGATGAAGTCCT CAAGATCACGAAGCACTCGAACCACCGGTGGCTGAGCATGGTTCGCACGC TAAAGCACATCATCAGGTTGTGGCACGTATTCAGGAGTATCTTGGTTGAG CTTGGCAAGAAGTTCCTTCTCGAGAAGGACGACAACAAGAACACCGTCCT TCAGCTCTACTCGATACTGCAGCTGCTTTCCGCGATTACGCGTGACGGCC AGTCCAGCGACGTCCCGATGACAACCGAGATGCACATGGCATTCGCCGCA CTCAAGATGGAGGTGCTCGACCCCAGCAAGCCACTCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig56787:120..608+

>mRNA_H-elongata_contig56787.13127.1 ID=mRNA_H-elongata_contig56787.13127.1|Name=mRNA_H-elongata_contig56787.13127.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig56787:120..608+ (Himanthalia elongata Himel1 dioecious)
TGGGATTGGTGTGACTGCCATCTTGCCACCGAGGCCGCCGAGCATGCCTT
TGGCACCTCGGCGGACCCCCAGAAGTCCAAGAACCCGGGCGCCCGCAGCA
TCTTCACCCTCATCACCAAGACCGCAGCAAGGGTCAATGAATCTGTCTCC
TTTAAGCAGAAATTCGAGGAGCTCCAGCTGGACATGCTCGATGAAGTCCT
CAAGATCACGAAGCACTCGAACCACCGGTGGCTGAGCATGGTTCGCACGC
TAAAGCACATCATCAGGTTGTGGCACTGGGATTGGTGTGACTGCCATCTT
GCCACCGAGGCCGCCGAGCATGCCTTTGGCACCTCGGCGGACCCCCAGAA
GTCCAAGAACCCGGGCGCCCGCAGCATCTTCACCCTCATCACCAAGACCG
CAGCAAGGGTCAATGAATCTGTCTCCTTTAAGCAGAAATTCGAGGAGCTC
CAGCTGGACATGCTCGATGAAGTCCTCAAGATCACGAAGCACTCGAACCA
CCGGTGGCTGAGCATGGTTCGCACGCTAAAGCACATCATCAGGTTGTGGC
ACAAGGACGACAACAAGAACACCGTCCTTCAGCTCTACTCGATACTGCAG
CTGCTTTCCGCGATTACGCGTGACGGCCAGTCCAGCGACGTCCCGATGAC
AACCGAGATGCACATGGCATTCGCCGCACTCAAGATGGAGGTGCTCGACC
CCAGCAAGCCACTCCAGAAGGACGACAACAAGAACACCGTCCTTCAGCTC
TACTCGATACTGCAGCTGCTTTCCGCGATTACGCGTGACGGCCAGTCCAG
CGACGTCCCGATGACAACCGAGATGCACATGGCATTCGCCGCACTCAAGA
TGGAGGTGCTCGACCCCAGCAAGCCACTCCAG
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