mRNA_H-elongata_contig56776.13125.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56776.13125.1
Unique NamemRNA_H-elongata_contig56776.13125.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56776.13125.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.400e-14
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 LEWWRVKAQEYPMLASLARWILCTPASQSQPERVFLSAGLVVTKRRS 141
            LEWWRVKA+EYP LASLAR +LC PA Q+Q ERVF SAGLVVTK R+
Sbjct:  481 LEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRA 527
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BLAST of mRNA_H-elongata_contig56776.13125.1 vs. uniprot
Match: A0A1A8CIX7_9TELE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothobranchius kadleci TaxID=1051664 RepID=A0A1A8CIX7_9TELE)

HSP 1 Score: 56.2 bits (134), Expect = 3.880e-9
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 LEWWRVKAQEYPMLASLARWILCTPASQSQPERVFLSAGLVVTKRRS 141
            LEWW+V A  YP+LASLA+  LC PA+    ERVF +AG +V+ +RS
Sbjct:   24 LEWWKVNAYAYPILASLAKAYLCIPATSVPSERVFSTAGDIVSAQRS 70
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BLAST of mRNA_H-elongata_contig56776.13125.1 vs. uniprot
Match: A0A151I7T7_9HYME (Zinc finger BED domain-containing protein 1 n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=A0A151I7T7_9HYME)

HSP 1 Score: 57.4 bits (137), Expect = 1.340e-8
Identity = 24/47 (51.06%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 LEWWRVKAQEYPMLASLARWILCTPASQSQPERVFLSAGLVVTKRRS 141
            LEWW+ +A  +P+L++LAR  LC PAS +  ER F +AG +VT +RS
Sbjct:  147 LEWWKARADRFPILSNLARKYLCIPASSANSERTFSTAGNIVTSKRS 193
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BLAST of mRNA_H-elongata_contig56776.13125.1 vs. uniprot
Match: A0A1X7T819_AMPQE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7T819_AMPQE)

HSP 1 Score: 55.8 bits (133), Expect = 5.000e-8
Identity = 24/47 (51.06%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 LEWWRVKAQEYPMLASLARWILCTPASQSQPERVFLSAGLVVTKRRS 141
            L+WWRV + +YP+LASLA+  L TPA+    ER+F +AGL V ++R+
Sbjct:  113 LDWWRVNSSKYPLLASLAKRYLSTPATSVPAERIFSAAGLTVNQQRA 159
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BLAST of mRNA_H-elongata_contig56776.13125.1 vs. uniprot
Match: A0A1A7Y149_9TELE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Iconisemion striatum TaxID=60296 RepID=A0A1A7Y149_9TELE)

HSP 1 Score: 53.9 bits (128), Expect = 7.000e-8
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 LEWWRVKAQEYPMLASLARWILCTPASQSQPERVFLSAGLVVTKRRS 141
            LEWW+V A  YP+LA LA+  LC PA+    ERVF +AG +V+ +RS
Sbjct:   76 LEWWKVHAYAYPILAPLAKAYLCIPATSVPSERVFSTAGDIVSAQRS 122
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BLAST of mRNA_H-elongata_contig56776.13125.1 vs. uniprot
Match: UPI00148F4C44 (zinc finger BED domain-containing protein 1-like n=1 Tax=Notolabrus celidotus TaxID=1203425 RepID=UPI00148F4C44)

HSP 1 Score: 55.5 bits (132), Expect = 7.920e-8
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    4 EWWRVKAQEYPMLASLARWILCTPASQSQPERVFLSAGLVVTKRRS 141
            +WW+V A  +P LA LAR  LC PA+    ERVF SAGL+V++ RS
Sbjct:  174 DWWKVNAGRFPRLAKLARQYLCIPATSVPSERVFSSAGLIVSRLRS 219
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BLAST of mRNA_H-elongata_contig56776.13125.1 vs. uniprot
Match: A0A8B6Y4H9_HYDVU (zinc finger BED domain-containing protein 1-like n=2 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6Y4H9_HYDVU)

HSP 1 Score: 55.1 bits (131), Expect = 1.320e-7
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 LEWWRVKAQEYPMLASLARWILCTPASQSQPERVFLSAGLVVTKRRS 141
            LEWW+    +YP+L++ AR  LC PA+ +  ERVF SAG VVT RR+
Sbjct:  213 LEWWKTMKLQYPILSNYARKYLCIPATSATSERVFSSAGNVVTARRT 259
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BLAST of mRNA_H-elongata_contig56776.13125.1 vs. uniprot
Match: UPI00077D4413 (zinc finger BED domain-containing protein 1-like n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=UPI00077D4413)

HSP 1 Score: 54.3 bits (129), Expect = 1.580e-7
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 LEWWRVKAQEYPMLASLARWILCTPASQSQPERVFLSAGLVVTKRRS 141
            LEWW+V A  YP+LA LA+  LC PA+    ERVF +AG +V+ +RS
Sbjct:  144 LEWWKVNAYAYPILAPLAKSYLCIPATSVPSERVFSTAGDIVSAQRS 190
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BLAST of mRNA_H-elongata_contig56776.13125.1 vs. uniprot
Match: A0A1A7ZCN3_NOTFU (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A1A7ZCN3_NOTFU)

HSP 1 Score: 52.4 bits (124), Expect = 1.630e-7
Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 LEWWRVKAQEYPMLASLARWILCTPASQSQPERVFLSAGLVVTKRRS 141
            L+WW+     +P LASLA+  LC PA+ +  ER+F SAG +V+K+R+
Sbjct:   34 LQWWKSNEARFPSLASLAKSYLCVPATSTPSERLFSSAGNIVSKKRT 80
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BLAST of mRNA_H-elongata_contig56776.13125.1 vs. uniprot
Match: A0A1A7XRV2_9TELE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Iconisemion striatum TaxID=60296 RepID=A0A1A7XRV2_9TELE)

HSP 1 Score: 53.5 bits (127), Expect = 2.550e-7
Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:    1 LEWWRVKAQEYPMLASLARWILCTPASQSQPERVFLSAGLVVTKRRS 141
            L WWR   +EYP+LA LA+  LC P +    ERVF +AG +VT +RS
Sbjct:  117 LTWWRSNEREYPLLARLAKQYLCVPGTSIASERVFSTAGDIVTAKRS 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56776.13125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHP9_9PHAE1.400e-1476.60Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A1A8CIX7_9TELE3.880e-955.32Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A151I7T7_9HYME1.340e-851.06Zinc finger BED domain-containing protein 1 n=1 Ta... [more]
A0A1X7T819_AMPQE5.000e-851.06Dimer_Tnp_hAT domain-containing protein n=1 Tax=Am... [more]
A0A1A7Y149_9TELE7.000e-853.19Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
UPI00148F4C447.920e-854.35zinc finger BED domain-containing protein 1-like n... [more]
A0A8B6Y4H9_HYDVU1.320e-753.19zinc finger BED domain-containing protein 1-like n... [more]
UPI00077D44131.580e-753.19zinc finger BED domain-containing protein 1-like n... [more]
A0A1A7ZCN3_NOTFU1.630e-746.81Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]
A0A1A7XRV2_9TELE2.550e-751.06Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56776contigH-elongata_contig56776:3066..3209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930922.6071548-CDS-H-elongata_contig56776:3065..32091622930922.6071548-CDS-H-elongata_contig56776:3065..3209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56776 3066..3209 +
1691679626.1306136-CDS-H-elongata_contig56776:3065..32091691679626.1306136-CDS-H-elongata_contig56776:3065..3209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56776 3066..3209 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56776.13125.1prot_H-elongata_contig56776.13125.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56776 3066..3209 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56776.13125.1

>prot_H-elongata_contig56776.13125.1 ID=prot_H-elongata_contig56776.13125.1|Name=mRNA_H-elongata_contig56776.13125.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
LEWWRVKAQEYPMLASLARWILCTPASQSQPERVFLSAGLVVTKRRS*
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mRNA from alignment at H-elongata_contig56776:3066..3209+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56776.13125.1 ID=mRNA_H-elongata_contig56776.13125.1|Name=mRNA_H-elongata_contig56776.13125.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig56776:3066..3209+ (Himanthalia elongata Himel1 dioecious)
CTTGAATGGTGGCGTGTCAAGGCGCAGGAGTATCCCATGCTGGCTTCACT
GGCTCGCTGGATACTGTGCACCCCAGCATCCCAGTCTCAGCCGGAGCGTG
TATTTTTGTCGGCAGGACTGGTCGTGACAAAGAGACGCTCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig56776:3066..3209+

>mRNA_H-elongata_contig56776.13125.1 ID=mRNA_H-elongata_contig56776.13125.1|Name=mRNA_H-elongata_contig56776.13125.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig56776:3066..3209+ (Himanthalia elongata Himel1 dioecious)
CTTGAATGGTGGCGTGTCAAGGCGCAGGAGTATCCCATGCTGGCTTCACT
GGCTCGCTGGATACTGTGCACCCCAGCATCCCAGTCTCAGCCGGAGCGTG
TATTTTTGTCGGCAGGACTGGTCGTGACAAAGAGACGCTCTTGACTTGAA
TGGTGGCGTGTCAAGGCGCAGGAGTATCCCATGCTGGCTTCACTGGCTCG
CTGGATACTGTGCACCCCAGCATCCCAGTCTCAGCCGGAGCGTGTATTTT
TGTCGGCAGGACTGGTCGTGACAAAGAGACGCTCTTGA
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