mRNA_H-elongata_contig56745.13124.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56745.13124.1
Unique NamemRNA_H-elongata_contig56745.13124.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig56745.13124.1 vs. uniprot
Match: A0A2N0P5T6_9GLOM (Uncharacterized protein (Fragment) n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N0P5T6_9GLOM)

HSP 1 Score: 113 bits (283), Expect = 1.530e-29
Identity = 61/121 (50.41%), Postives = 84/121 (69.42%), Query Frame = 1
Query:   10 PSPIPPELAGLTDLEQLLIARVCPVMKVVRLQGGQYGYRGHVLNIAQDPGALVSSLPRRVTSTEVPIVVIRQTATTGTWSGRTFTVRQSRIREALRWLIANNPAYRDVNIDEEALRTLPEN 372
            PS +P EL  LT++E++LIAR   VM V RL+GGQYGYRG+V+N  QD     + LPR + S E  I++IR  + +   + R FTVR++++  AL+WL ANN  Y D+ IDEEAL++LPEN
Sbjct:   47 PSEVPEELRDLTEIEEMLIARAFTVMSVYRLRGGQYGYRGNVINFPQDVHEFATWLPRNLLSLE--ILIIRHHSASDLTAFRDFTVRRAKVTRALQWLKANNRYYADIIIDEEALQSLPEN 165          
BLAST of mRNA_H-elongata_contig56745.13124.1 vs. uniprot
Match: A0A6H5JBH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBH9_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.480e-29
Identity = 60/121 (49.59%), Postives = 84/121 (69.42%), Query Frame = 1
Query:   10 PSPIPPELAGLTDLEQLLIARVCPVMKVVRLQGGQYGYRGHVLNIAQDPGALVSSLPRRVTSTEVPIVVIRQTATTGTWSG--RTFTVRQSRIREALRWLIANNPAYRDVNIDEEALRTLP 366
            P  +P EL GLT  E++LIAR CP+M+V+ L+GGQ GY GHV+N+AQD   L ++LPR   + +VPI++IR+    G   G  +   VR++R++ AL+WLIANNP YRD+ +D  AL  LP
Sbjct:    3 PGSVPVELQGLTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPRL--AADVPIIIIRRE---GQEPGQHKDLHVRRARVQRALQWLIANNPYYRDIVLDNTALSQLP 118          
BLAST of mRNA_H-elongata_contig56745.13124.1 vs. uniprot
Match: A0A6S7JBU2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JBU2_PARCT)

HSP 1 Score: 108 bits (270), Expect = 2.270e-27
Identity = 51/121 (42.15%), Postives = 83/121 (68.60%), Query Frame = 1
Query:   10 PSPIPPELAGLTDLEQLLIARVCPVMKVVRLQGGQYGYRGHVLNIAQDPGALVSSLPRRVTSTEVPIVVIRQTATTGTWSGRTFTVRQSRIREALRWLIANNPAYRDVNIDEEALRTLPEN 372
            P  +P +L GLT +E++LI+RVCP+M+V R  GGQ GY+GHVLN+ QD  + ++ LP RV   ++P++++R+           FTVR+ ++ EA+ WL  NNP ++++ ID + +++LPEN
Sbjct:   58 PGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVA--DLPVLIVRR------HGAEDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLPEN 170          
BLAST of mRNA_H-elongata_contig56745.13124.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 5.270e-27
Identity = 60/121 (49.59%), Postives = 84/121 (69.42%), Query Frame = 1
Query:   10 PSPIPPELAGLTDLEQLLIARVCPVMKVVRLQGGQYGYRGHVLNIAQDPGALVSSLPRRVTSTEVPIVVIRQTATTGTWSG--RTFTVRQSRIREALRWLIANNPAYRDVNIDEEALRTLP 366
            P  +P EL GLT  E++LIAR CP+M+V+ L+GGQ GY GHV+N+AQD   L ++LPR   + +VPI++IR+    G   G  +   VR++R++ AL+WLIANNP YRD+ +D  AL  LP
Sbjct:  154 PGSVPVELQGLTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPRL--AADVPIIIIRRE---GQEPGQHKDLHVRRARVQRALQWLIANNPYYRDIVLDNTALSQLP 269          
BLAST of mRNA_H-elongata_contig56745.13124.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 7.580e-27
Identity = 59/121 (48.76%), Postives = 84/121 (69.42%), Query Frame = 1
Query:   10 PSPIPPELAGLTDLEQLLIARVCPVMKVVRLQGGQYGYRGHVLNIAQDPGALVSSLPRRVTSTEVPIVVIRQTATTGTWSG--RTFTVRQSRIREALRWLIANNPAYRDVNIDEEALRTLP 366
            P  +P EL GLT  E++LIAR CP+M+V+ L+GGQ GY GHV+N+AQD   L ++LPR   + +VPI++IR+    G   G  +   VR++R++ AL+WLIANNP YRD+ +D  A+  LP
Sbjct:   47 PGSVPVELQGLTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPRL--AADVPIIIIRRE---GQEPGQHKDLHVRRARVQRALQWLIANNPYYRDIVLDNTAISQLP 162          
BLAST of mRNA_H-elongata_contig56745.13124.1 vs. uniprot
Match: A0A6S7G3B5_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7G3B5_PARCT)

HSP 1 Score: 110 bits (274), Expect = 7.710e-27
Identity = 52/119 (43.70%), Postives = 83/119 (69.75%), Query Frame = 1
Query:   10 PSPIPPELAGLTDLEQLLIARVCPVMKVVRLQGGQYGYRGHVLNIAQDPGALVSSLPRRVTSTEVPIVVIRQTATTGTWSGRTFTVRQSRIREALRWLIANNPAYRDVNIDEEALRTLP 366
            P  +P +L GLT +E++LI+RVCP+M+V R  GGQ GY+GHVLN+ QD  + ++ LP RV   ++P++++R+     T   R FTVR+ ++ EA+ WL  NNP ++D+ ID + +++LP
Sbjct:  184 PGTVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVA--DLPVLIVRRHGAEDTH--RDFTVRRHKVLEAVLWLKTNNPFFKDIEIDRDVIQSLP 298          
BLAST of mRNA_H-elongata_contig56745.13124.1 vs. uniprot
Match: UPI00106C8F71 (uncharacterized protein LOC114545138 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C8F71)

HSP 1 Score: 109 bits (273), Expect = 1.500e-26
Identity = 52/121 (42.98%), Postives = 84/121 (69.42%), Query Frame = 1
Query:   10 PSPIPPELAGLTDLEQLLIARVCPVMKVVRLQGGQYGYRGHVLNIAQDPGALVSSLPRRVTSTEVPIVVIRQTATTGTWSGRTFTVRQSRIREALRWLIANNPAYRDVNIDEEALRTLPEN 372
            P  +P +L GLT +E++LI+RVCP+M+V R  GGQ GY+GHVLN+ QD  + ++ LP +V   ++P++++R+     T   + FTVR+ ++ EA+ WL  NNP ++D+ ID + ++ LPEN
Sbjct:   57 PGTVPEQLRGLTQVEEMLISRVCPIMQVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPAQVA--DLPVMIVRRQGADETH--KDFTVRRHKVFEAISWLKTNNPFFKDIEIDRDIIQRLPEN 173          
BLAST of mRNA_H-elongata_contig56745.13124.1 vs. uniprot
Match: A0A6S7JXT5_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JXT5_PARCT)

HSP 1 Score: 110 bits (276), Expect = 1.940e-26
Identity = 53/121 (43.80%), Postives = 85/121 (70.25%), Query Frame = 1
Query:   10 PSPIPPELAGLTDLEQLLIARVCPVMKVVRLQGGQYGYRGHVLNIAQDPGALVSSLPRRVTSTEVPIVVIRQTATTGTWSGRTFTVRQSRIREALRWLIANNPAYRDVNIDEEALRTLPEN 372
            P  +P +L GLT +E++LI+RVCP+M+V R  GGQ GY+GHVLN+ QD  + ++ LP RV   ++P++++R+     T   R FTVR+ ++ EA+ WL  NNP ++++ ID + +++LPEN
Sbjct:  169 PGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVA--DLPVLIVRRHGAEDTH--RDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLPEN 285          
BLAST of mRNA_H-elongata_contig56745.13124.1 vs. uniprot
Match: A0A7D9LMQ1_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LMQ1_PARCT)

HSP 1 Score: 110 bits (276), Expect = 2.060e-26
Identity = 53/121 (43.80%), Postives = 85/121 (70.25%), Query Frame = 1
Query:   10 PSPIPPELAGLTDLEQLLIARVCPVMKVVRLQGGQYGYRGHVLNIAQDPGALVSSLPRRVTSTEVPIVVIRQTATTGTWSGRTFTVRQSRIREALRWLIANNPAYRDVNIDEEALRTLPEN 372
            P  +P +L GLT +E++LI+RVCP+M+V R  GGQ GY+GHVLN+ QD  + ++ LP RV   ++P++++R+     T   R FTVR+ ++ EA+ WL  NNP ++++ ID + +++LPEN
Sbjct:  158 PGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVA--DLPVLIVRRHGAEDTH--RDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLPEN 274          
BLAST of mRNA_H-elongata_contig56745.13124.1 vs. uniprot
Match: A0A7D9ETB4_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9ETB4_PARCT)

HSP 1 Score: 107 bits (268), Expect = 5.190e-26
Identity = 53/121 (43.80%), Postives = 84/121 (69.42%), Query Frame = 1
Query:   10 PSPIPPELAGLTDLEQLLIARVCPVMKVVRLQGGQYGYRGHVLNIAQDPGALVSSLPRRVTSTEVPIVVIRQTATTGTWSGRTFTVRQSRIREALRWLIANNPAYRDVNIDEEALRTLPEN 372
            P  +P +L+GLT +E++LI+RVCP+M+V R  GGQ GY+G VLN+ QD  + +  LP RV   ++P++++R+  T  T   R FTVR+ ++ EA+ WL  NN  ++D+ ID + +++LPEN
Sbjct:  134 PGIVPEQLSGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGRVLNLPQDIQSFLKRLPSRVA--DLPVLIVRRHGTEDTH--RDFTVRRHKVVEAVLWLKTNNLFFKDIEIDRDVIQSLPEN 250          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56745.13124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N0P5T6_9GLOM1.530e-2950.41Uncharacterized protein (Fragment) n=2 Tax=Rhizoph... [more]
A0A6H5JBH9_9PHAE3.480e-2949.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6S7JBU2_PARCT2.270e-2742.15Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A6H5L976_9PHAE5.270e-2749.59ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]
A0A6H5J8Y8_9PHAE7.580e-2748.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6S7G3B5_PARCT7.710e-2743.70Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
UPI00106C8F711.500e-2642.98uncharacterized protein LOC114545138 n=1 Tax=Dendr... [more]
A0A6S7JXT5_PARCT1.940e-2643.80Uncharacterized protein n=2 Tax=Paramuricea clavat... [more]
A0A7D9LMQ1_PARCT2.060e-2643.80Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]
A0A7D9ETB4_PARCT5.190e-2643.80Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56745contigH-elongata_contig56745:843..1214 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score108.2
Seed ortholog evalue2.7e-21
Seed eggNOG ortholog588596.U9UFR6
KEGG koko:K15255
EggNOG free text desc.Belongs to the helicase family
EggNOG OGs3ABUV@33154,3P9IP@4751,COG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Hectar predicted targeting categoryother localisation
Exons1
Model size372
Cds size372
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930922.5558727-CDS-H-elongata_contig56745:842..12141622930922.5558727-CDS-H-elongata_contig56745:842..1214Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56745 843..1214 -
1691679626.1102827-CDS-H-elongata_contig56745:842..12141691679626.1102827-CDS-H-elongata_contig56745:842..1214Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56745 843..1214 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56745.13124.1prot_H-elongata_contig56745.13124.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56745 843..1214 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56745.13124.1

>prot_H-elongata_contig56745.13124.1 ID=prot_H-elongata_contig56745.13124.1|Name=mRNA_H-elongata_contig56745.13124.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MVRPSPIPPELAGLTDLEQLLIARVCPVMKVVRLQGGQYGYRGHVLNIAQ
DPGALVSSLPRRVTSTEVPIVVIRQTATTGTWSGRTFTVRQSRIREALRW
LIANNPAYRDVNIDEEALRTLPEN
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mRNA from alignment at H-elongata_contig56745:843..1214-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56745.13124.1 ID=mRNA_H-elongata_contig56745.13124.1|Name=mRNA_H-elongata_contig56745.13124.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=372bp|location=Sequence derived from alignment at H-elongata_contig56745:843..1214- (Himanthalia elongata Himel1 dioecious)
ATGGTCAGACCTTCGCCTATACCTCCTGAGCTTGCTGGATTAACTGACCT CGAACAGTTGTTGATAGCAAGGGTATGTCCAGTTATGAAGGTGGTTCGGC TCCAGGGCGGTCAATACGGGTATAGGGGTCACGTCCTCAATATAGCTCAA GATCCTGGTGCCTTAGTCTCGAGTCTACCCAGAAGAGTTACATCAACGGA GGTGCCCATTGTCGTCATACGACAGACAGCGACTACTGGGACATGGTCTG GGCGTACTTTTACTGTACGTCAATCACGTATTCGTGAGGCATTAAGGTGG CTCATAGCCAATAATCCAGCATATCGTGATGTCAATATTGACGAGGAGGC GTTACGAACACTTCCCGAAAAC
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Coding sequence (CDS) from alignment at H-elongata_contig56745:843..1214-

>mRNA_H-elongata_contig56745.13124.1 ID=mRNA_H-elongata_contig56745.13124.1|Name=mRNA_H-elongata_contig56745.13124.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig56745:843..1214- (Himanthalia elongata Himel1 dioecious)
ATGGTCAGACCTTCGCCTATACCTCCTGAGCTTGCTGGATTAACTGACCT
CGAACAGTTGTTGATAGCAAGGGTATGTCCAGTTATGAAGGTGGTTCGGC
TCCAGGGCGGTCAATACGGGTATAGGGGTCACGTCCTCAATATAGCTCAA
GATCCTGGTGCCTTAGTCTCGAGTCTACCCAGAAGAGTTACATCAACGGA
GGTGCCCATTGTCGTCATACGACAGACAGCGACTACTGGGACATGGTCTG
GGCGTACTTTTACTGTACGTCAATCACGTATTCGTGAGGCATTAAGGTGG
CTCATAGCCAATAATCCAGCATATCGTGATGTCAATATTGACGAGGAGGC
GTTACGAACACTTCCCGAAAACATGGTCAGACCTTCGCCTATACCTCCTG
AGCTTGCTGGATTAACTGACCTCGAACAGTTGTTGATAGCAAGGGTATGT
CCAGTTATGAAGGTGGTTCGGCTCCAGGGCGGTCAATACGGGTATAGGGG
TCACGTCCTCAATATAGCTCAAGATCCTGGTGCCTTAGTCTCGAGTCTAC
CCAGAAGAGTTACATCAACGGAGGTGCCCATTGTCGTCATACGACAGACA
GCGACTACTGGGACATGGTCTGGGCGTACTTTTACTGTACGTCAATCACG
TATTCGTGAGGCATTAAGGTGGCTCATAGCCAATAATCCAGCATATCGTG
ATGTCAATATTGACGAGGAGGCGTTACGAACACTTCCCGAAAAC
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