mRNA_H-elongata_contig56694.13119.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56694.13119.1
Unique NamemRNA_H-elongata_contig56694.13119.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56694.13119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56694contigH-elongata_contig56694:1073..3503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size222
Cds size222
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56694.13119.1prot_H-elongata_contig56694.13119.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56694 1073..3503 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930921.9841018-CDS-H-elongata_contig56694:1072..11461622930921.9841018-CDS-H-elongata_contig56694:1072..1146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56694 1073..1146 -
1691679625.865202-CDS-H-elongata_contig56694:1072..11461691679625.865202-CDS-H-elongata_contig56694:1072..1146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56694 1073..1146 -
1622930922.0037065-CDS-H-elongata_contig56694:1734..18061622930922.0037065-CDS-H-elongata_contig56694:1734..1806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56694 1735..1806 -
1691679625.8758264-CDS-H-elongata_contig56694:1734..18061691679625.8758264-CDS-H-elongata_contig56694:1734..1806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56694 1735..1806 -
1622930922.02344-CDS-H-elongata_contig56694:3427..35031622930922.02344-CDS-H-elongata_contig56694:3427..3503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56694 3428..3503 -
1691679625.888153-CDS-H-elongata_contig56694:3427..35031691679625.888153-CDS-H-elongata_contig56694:3427..3503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56694 3428..3503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56694.13119.1

>prot_H-elongata_contig56694.13119.1 ID=prot_H-elongata_contig56694.13119.1|Name=mRNA_H-elongata_contig56694.13119.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
TGPIPNELGKLTALTTLDLRGNQLSGPIPNELGKLTALTTLDLRLNQLNG
PIPNVLGKLTALKTLDLGGNQLSG
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mRNA from alignment at H-elongata_contig56694:1073..3503-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56694.13119.1 ID=mRNA_H-elongata_contig56694.13119.1|Name=mRNA_H-elongata_contig56694.13119.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2431bp|location=Sequence derived from alignment at H-elongata_contig56694:1073..3503- (Himanthalia elongata Himel1 dioecious)
ACAGGGCCGATACCGAATGAGCTGGGGAAACTCACCGCCCTTACGACTCT
TGACCTTCGTGGAAACCAACTAAGCGGTAAGGCGAACATGCGTTCTCTTG
TATAGGGAGATGTGTATTTTTAAATGAACGGTAACTATTAATACCTCCTC
AAAATAATCATATGAATATTTCCGAACGTCGATATCATCTGCTTCCACCG
AATATCATTCGTCGAATATTGACCTAGACTGTGTTTAAAATATTCTTCAT
ATGATGTTTTCTTAATGCTGGAGTCGAAGCAGGTACGGCATGGTTGTCTA
TTCCGGCGAAATATTTCTTCTATAGTATATAGGTGTGAAAGGTATTTTCC
CGTGTCACTACAGACAATTCAAAACCCTTTTAGATTCAACTCAGTGTTTA
TCGCGTTCCTTTTGCGTTCTAGTCTCTAGTTTTTGATAAGGTACCCCTTA
GTATCTGATATTTTCACATATTGCACATTTTATGTTGTATGGTATTTAAT
AGTTCGACAAGACACGGAAGCATTTTCTTAGTTACACTTTTTTGGTAATC
ACGAGTGAAGTGTAGAATCCTACCACCCTAATATGAACAAACTCATTGGT
GGGGTCTAAATGTATCTGGCCTATCCAAAAGCTCAATGAAACCCTTCGAA
CATCCGCAGCCGCTTGTTGTCGTGCACAACCAGAGCCCCCCACGCTTCCC
ATCGTGAGTGTTGGAAAAAAGAGGCGTGCAGTAATTGGTCCATGGGGTTA
CCTGAAAAGGCTTCACCCGTTACTCGAGCTACCTTGAGGATTACTGACTC
AGTGCCGGTGGACTCTTGGTGGTAAAGGCCATCGGTGCGCAATTGCGTGG
CCTGATGAAATCAGGATTGACCCGATGGCGGTTGACGGTAGAAATGGACG
CCGTGGCGGAAAACTGGAGGATCGAGAAAATCCCGGGATGAGTAAGCACC
AGATTCAACTTGGGTTGAGAGAACGAGCTAACGCCGTGCTGAACACATCA
CGCGAGACCAAATTCTCAGGCGCAAACCGAGACAAGGGAAAATTATTTTT
CCTGTTTAGCTGACCACGAGCAGAAGGCAACCAAATCCGGTTGATCTTCT
GCTAAATGTGTGACCAACAACAAGCTTTTTTTTTTCACCTTAATTTCGAC
GAACTGAGCGGTACGGTCAACAAGCATAATTTTGTATTTTGAAAAGCAAT
TTTTTAATGGACGGTAACCATTAATATCTCGTCACATTCAAAGTATTTTT
TAGTTTGAAAATTTCCAAACGTCGATTTCTGCTTCTACAGAATATCATTC
GTCGAATATTGACCCAGATTTAGTGTTACAAATAATTTACATATAAAGTG
TTTCTAATGCTGAAGTCGAATCGGTCACTGGATTATCGTCCATTCCGCCC
CAAAATACCTTCTAGGCGGTAAATGTACTCTACCCGTGTCCCTACAGACA
ATTCGAATCGCTTTAGTTTTTGCTTTTGATAAGGTACACCCTAGTATCTG
ATATTTTCACATATTGCACAGTTTATGTTGTACCTATTCGTTTAGACAGA
TTCAGGTGAAGAGGGTTCATTTAGGGAATGTAGACCGGAGCCGTGTTGTG
AATGTTTCTCGGACATTGATGCTGTCTACTTTTATGTAGTGTCAATATCG
TCGCCTGGTGCGTTCCGTGTTTTTCTCCGGTCTCACTCTGTACTCAGGGC
CGATACCGAATGAGCTGGGAAAACTCACCGCCCTTACAACTCTTGACCTT
CGTTTAAACCAACTAAACGGTAAGGCGAACATGCGTTCAATTGTGTTGGG
AGATGTGTATTTTGAAATGAACGGTAACCATTAATACCTTCTTTAAATAT
TTGGTATGTTCCAGCATAAATATTTCCGAACGTCGATATCTGCTTCCACC
GAACATCATTCGTCGAATATTGACCTAGACTTCGTGTTTAAAATATTCTT
CATATGATATGTTTTTAATGCTCGAGTCGAATCAGGTACAAGATCGTTGT
TTATTCCGGCGAAATAGTTTTTCTATATAGGTGTGAAAGGTATTTTTGCC
GTGTCACTACAGGCAATTTAAAACTCTTTTTATTCAGCTCAGTGTTCATG
GCGTTCGTTTTGCCTTCTAGTTTTTTGTTTTTGATAAGGTACCCCTTAGT
ATCTGATATTTGATATTTTCACATATTTAAAATTTTATTTTGTACCTAAT
CGTTTTTTCAGATTCAGGTGAAGAGGGTTCATTTAGGAAATGTAGACATG
AGTCGCGTTGTGAATGTTTCTCGGACATTGATGTTGTCTACTTTTATGTA
GTGTCAATATCGTCGCCTGAGCGTTTCTTGTTTTTCTCTGTCTCACTCTG
TGCACAGGGCCGATACCGAATGTGCTGGGGAAACTCACCGCCCTTAAGAC
TCTTGACCTTGGTGGAAACCAACTAAGCGGT
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Coding sequence (CDS) from alignment at H-elongata_contig56694:1073..3503-

>mRNA_H-elongata_contig56694.13119.1 ID=mRNA_H-elongata_contig56694.13119.1|Name=mRNA_H-elongata_contig56694.13119.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig56694:1073..3503- (Himanthalia elongata Himel1 dioecious)
ACAGGGCCGATACCGAATGAGCTGGGGAAACTCACCGCCCTTACGACTCT
TGACCTTCGTGGAAACCAACTAAGCGACAGGGCCGATACCGAATGAGCTG
GGGAAACTCACCGCCCTTACGACTCTTGACCTTCGTGGAAACCAACTAAG
CGGGCCGATACCGAATGAGCTGGGAAAACTCACCGCCCTTACAACTCTTG
ACCTTCGTTTAAACCAACTAAACGGGCCGATACCGAATGAGCTGGGAAAA
CTCACCGCCCTTACAACTCTTGACCTTCGTTTAAACCAACTAAACGGGCC
GATACCGAATGTGCTGGGGAAACTCACCGCCCTTAAGACTCTTGACCTTG
GTGGAAACCAACTAAGCGGTGGCCGATACCGAATGTGCTGGGGAAACTCA
CCGCCCTTAAGACTCTTGACCTTGGTGGAAACCAACTAAGCGGT
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