prot_H-elongata_contig5669.13118.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5669.13118.1
Unique Nameprot_H-elongata_contig5669.13118.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length52
Homology
BLAST of mRNA_H-elongata_contig5669.13118.1 vs. uniprot
Match: D8LCN1_ECTSI (Breast cancer 2 like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN1_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 3.370e-12
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 0
Query:    7 ATDCLGLRHARWIIWKLAATERRFPSHFPYGYLTAERVARQLRYR 51
            AT      H RWI+WKLAA ERRFP HFP GYLTA R+ARQL+YR
Sbjct: 2838 ATPIWVQNHTRWIVWKLAAMERRFPEHFPGGYLTAGRLARQLQYR 2882          
BLAST of mRNA_H-elongata_contig5669.13118.1 vs. uniprot
Match: A0A6H5JH10_9PHAE (BRCA-2_helical domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH10_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.020e-7
Identity = 24/35 (68.57%), Postives = 25/35 (71.43%), Query Frame = 0
Query:    7 ATDCLGLRHARWIIWKLAATERRFPSHFPYGYLTA 41
            AT      H RWI+WKLAA ERRFP HFP GYLTA
Sbjct: 3185 ATPTWVQNHTRWIVWKLAAMERRFPEHFPGGYLTA 3219          
BLAST of mRNA_H-elongata_contig5669.13118.1 vs. uniprot
Match: M4C6C4_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C6C4_HYAAE)

HSP 1 Score: 53.9 bits (128), Expect = 4.880e-7
Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 0
Query:    1 KHIYHP--ATDCLGLRHARWIIWKLAATERRFPSHFPYGYLTAERVARQLRYR 51
            KHI+    AT    L H RW++WKLAATER FP      YLT ++V RQ+ YR
Sbjct:  238 KHIWKKMGATFAWFLNHYRWVVWKLAATERSFPRLLLGKYLTKDQVVRQIAYR 290          
BLAST of mRNA_H-elongata_contig5669.13118.1 vs. uniprot
Match: B5YME7_THAPS (Breast cancer 2 early onset (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YME7_THAPS)

HSP 1 Score: 52.0 bits (123), Expect = 2.260e-6
Identity = 23/37 (62.16%), Postives = 27/37 (72.97%), Query Frame = 0
Query:   15 HARWIIWKLAATERRFPSHFPYGYLTAERVARQLRYR 51
            H RWI+WKLAA ERRFP H    YLT ERV +Q++ R
Sbjct:   15 HYRWIVWKLAAMERRFPHHLGGHYLTYERVLKQMKGR 51          
BLAST of mRNA_H-elongata_contig5669.13118.1 vs. uniprot
Match: A0A0P1B6Q2_PLAHL (Breast cancer type 2 susceptibility n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B6Q2_PLAHL)

HSP 1 Score: 50.4 bits (119), Expect = 8.210e-6
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 0
Query:   13 LRHARWIIWKLAATERRFPSHFPYGYLTAERVARQLRYR 51
            L H RWI+WKLAATER FP      YLT ++V +Q+ YR
Sbjct:  432 LNHYRWIVWKLAATERAFPRLLLSNYLTQDQVMKQITYR 470          
BLAST of mRNA_H-elongata_contig5669.13118.1 vs. uniprot
Match: A0A146LRR7_LYGHE (Breast cancer type 2 susceptibility (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A146LRR7_LYGHE)

HSP 1 Score: 49.3 bits (116), Expect = 2.100e-5
Identity = 22/37 (59.46%), Postives = 24/37 (64.86%), Query Frame = 0
Query:   15 HARWIIWKLAATERRFPSHFPYGYLTAERVARQLRYR 51
            H RWI+WKLA TER FP  F    LT E V  QL+YR
Sbjct:  918 HYRWIVWKLACTERTFPEQFGRSCLTLENVLLQLKYR 954          
BLAST of mRNA_H-elongata_contig5669.13118.1 vs. uniprot
Match: F7E9I9_XENTR (BRCA2, DNA repair-associated n=5 Tax=Xenopus tropicalis TaxID=8364 RepID=F7E9I9_XENTR)

HSP 1 Score: 48.5 bits (114), Expect = 3.950e-5
Identity = 23/37 (62.16%), Postives = 25/37 (67.57%), Query Frame = 0
Query:   15 HARWIIWKLAATERRFPSHFPYGYLTAERVARQLRYR 51
            H RWI+WKLAA E RFP  F    LT ERV  QL+YR
Sbjct: 2430 HYRWIVWKLAAMEVRFPKTFACRCLTPERVLLQLKYR 2466          
BLAST of mRNA_H-elongata_contig5669.13118.1 vs. uniprot
Match: UPI001F4F2E91 (breast cancer type 2 susceptibility protein-like n=1 Tax=Schistocerca americana TaxID=7009 RepID=UPI001F4F2E91)

HSP 1 Score: 48.1 bits (113), Expect = 5.400e-5
Identity = 22/37 (59.46%), Postives = 25/37 (67.57%), Query Frame = 0
Query:   15 HARWIIWKLAATERRFPSHFPYGYLTAERVARQLRYR 51
            H RWI+WKLAATER FP  F   YLT   +  QL+YR
Sbjct: 1370 HYRWIVWKLAATERSFPHIFASRYLTPRVLLLQLKYR 1406          
BLAST of mRNA_H-elongata_contig5669.13118.1 vs. uniprot
Match: UPI001F5F74B6 (breast cancer type 2 susceptibility protein-like n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5F74B6)

HSP 1 Score: 48.1 bits (113), Expect = 5.410e-5
Identity = 22/37 (59.46%), Postives = 25/37 (67.57%), Query Frame = 0
Query:   15 HARWIIWKLAATERRFPSHFPYGYLTAERVARQLRYR 51
            H RWI+WKLAATER FP  F   YLT   +  QL+YR
Sbjct: 2791 HYRWIVWKLAATERSFPHIFASRYLTPRVLLLQLKYR 2827          
BLAST of mRNA_H-elongata_contig5669.13118.1 vs. uniprot
Match: UPI0008547BA3 (breast cancer type 2 susceptibility protein n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI0008547BA3)

HSP 1 Score: 48.1 bits (113), Expect = 5.410e-5
Identity = 23/37 (62.16%), Postives = 25/37 (67.57%), Query Frame = 0
Query:   15 HARWIIWKLAATERRFPSHFPYGYLTAERVARQLRYR 51
            H RWI+WKLAA E RFP  F    LT ERV  QL+YR
Sbjct: 3068 HYRWIVWKLAAMEVRFPELFASRCLTPERVLLQLKYR 3104          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5669.13118.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LCN1_ECTSI3.370e-1268.89Breast cancer 2 like n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JH10_9PHAE1.020e-768.57BRCA-2_helical domain-containing protein n=1 Tax=E... [more]
M4C6C4_HYAAE4.880e-750.94Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
B5YME7_THAPS2.260e-662.16Breast cancer 2 early onset (Fragment) n=1 Tax=Tha... [more]
A0A0P1B6Q2_PLAHL8.210e-656.41Breast cancer type 2 susceptibility n=1 Tax=Plasmo... [more]
A0A146LRR7_LYGHE2.100e-559.46Breast cancer type 2 susceptibility (Fragment) n=2... [more]
F7E9I9_XENTR3.950e-562.16BRCA2, DNA repair-associated n=5 Tax=Xenopus tropi... [more]
UPI001F4F2E915.400e-559.46breast cancer type 2 susceptibility protein-like n... [more]
UPI001F5F74B65.410e-559.46breast cancer type 2 susceptibility protein-like n... [more]
UPI0008547BA35.410e-562.16breast cancer type 2 susceptibility protein n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015252Breast cancer type 2 susceptibility protein, helical domainPFAMPF09169BRCA-2_helicalcoord: 15..51
e-value: 1.5E-9
score: 37.8
IPR015525Breast cancer type 2 susceptibility proteinPANTHERPTHR11289BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN BRCA2coord: 15..51
IPR036315BRCA2 helical domain superfamilySUPERFAMILY81872BRCA2 helical domaincoord: 15..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5669contigH-elongata_contig5669:10249..10404 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5669.13118.1mRNA_H-elongata_contig5669.13118.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5669 10249..10404 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5669.13118.1 ID=prot_H-elongata_contig5669.13118.1|Name=mRNA_H-elongata_contig5669.13118.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
KHIYHPATDCLGLRHARWIIWKLAATERRFPSHFPYGYLTAERVARQLRY
R*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015252BRCA2_hlx
IPR015525BRCA2
IPR036315BRCA2_hlx_sf