mRNA_H-elongata_contig56682.13115.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig56682.13115.1 vs. uniprot
Match: D7G5A4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5A4_ECTSI) HSP 1 Score: 921 bits (2380), Expect = 0.000e+0 Identity = 543/876 (61.99%), Postives = 637/876 (72.72%), Query Frame = 1
Query: 13 TRKALDVYAKAAKRFPRRYDIYLDLAEGVECVSPQQHIFIHQALASCLRRAIGKKHLGPDVRDLADAFAAKLCDIKLERPRPKRLPPRAVGLPSKRVSEVALTATDLLVSKLMESRKKQEPQYEVAVQVVEGLVSWLGSCQKIASRSEAEYESGE---EVISDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQKGENGDPMDRFTLYPTTLLRYGICQLYCNEEKKARKAFAFLNHEEPEGPYGDMMLEVAKAYAETDHEEESLVLLQQVAQSKHPRHRLASIQLGEAYAAQGKHELAAETYATVLAERPHHAVALAGLAEAAYWRGATIIPSALRLLTSAVDRATETWTREIPQLSPINE----EEPNGFQRLQLLIQWATLSRMDGNAANFACVAHPLVTTALGQWEQRQKFEQAGVWKPSAVPSFLGKMDWEVGRRARVSSLAARLLEDVDVIAGVSRRVVFWHLIELVRCLHELGNFSEVGKVVAMAVKPKGILRSLEKKDLHMAAASSGHKVLRSIPTGSPILGPAPREGLALGPLRAPEIFAS----DQAFAAA-PSEHYFSPPWRYVEEKDDERYSLRGGRAWQ--LNSFPHYSQRRSRSRTLMKISEQKQDEDSICTIVRALSTTPGNDATWNLLQRVIMKRGAEIADGGFHGENVEALVSRHREQAQGLLFRGNGSVIWNRSKHALRMYRQAHVLRPKEPLPMLSLATLSIRMLTVMDTLVEIDGVCVLQALACLHRYADLRSPRAATNAMRSGTI-STGLVSSTPVPEAVLQQEIMYNLGRGYHQVGLAELAIEYYNRALRVKDERGHELRNWHGGD-GVTRETAHNLCVLYKRTGATAMALRILQKYLSIG 2592
+++ALDVYAKAAKRFPR+ DIYLDLAE VECVSPQQ+IF+HQALASCLRR +GK++LGPDVRDLAD F+A+L +IKLE P+PKRLP R GLPSKR EVA+TAT LLV KLMESRK+QEPQYEVAVQVVEGL SWL SC +IA R + EYESGE E + XXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXX GE +PMD F L P +LRYGICQLYC E++KA A FL EE +GP+G MMLEVAK YAET + ESL LL+ VAQSKHPRHRLAS+QLG AYA+QGKHELA+ TY+ VLAERPHHA ALAG+AEAAYWRG +P+AL L++AV+RAT+ WT SP + E+ FQRLQLL+QWATLS M+ N A+FACVA PLV+ ALGQ QRQ+FEQ KP VP + E R R L V RR VFWHL+E+VR L LG+ +EV K+V A++P G+LR LEK+DL A++ VLR++P GSPI GPA REG LGP + A+ D A A SE Y+ PPWR VEEKDD+ R GRAW+ S RRSR R LM++ E+K D D+ICT VRALS PGNDA WNL+QRV M+RG E ADGGFHGE VEALVSRHRE+ QGLL R + + IWNR+KHALR+Y AH RP+EPLP+L LA R +TVM+T+VE DGVCVLQALACLHRYA LR +A + T+ ST + +PEAVL+QEIMYNLGR YHQVGL ELA+EYY+RAL+VKDERG ELR+W G D GVT+ETAHN+C LYKR G TAMAL +L KYL++G
Sbjct: 207 SKQALDVYAKAAKRFPRKLDIYLDLAECVECVSPQQNIFVHQALASCLRRVVGKRYLGPDVRDLADGFSARLREIKLEHPKPKRLPARRPGLPSKREGEVAMTATALLVGKLMESRKRQEPQYEVAVQVVEGLGSWLNSCHRIACRDDLEYESGEGGEEDELEGDGELDSXXXVRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEDEPMDTFELDPEIVLRYGICQLYCGEKEKADNALLFLKDEEADGPHGHMMLEVAKVYAETGYLVESLELLRNVAQSKHPRHRLASVQLGAAYASQGKHELASNTYSVVLAERPHHAAALAGIAEAAYWRGKGTVPAALSALSTAVERATKAWTDGGLAASPAEDDDEGEDATAFQRLQLLMQWATLSLMENNRADFACVAVPLVSVALGQLVQRQEFEQQ---KPPPVPPVRSQ---ETARSGRAGPTKPGLPSGSKQGEQVGRRAVFWHLVEVVRSLKALGSSAEVKKLVDAALQPNGLLRGLEKEDLQAVVANADTAVLRTMPGGSPIHGPASREGFLLGPAITGDPSANPDGDDSPTAVALMSEQYYPPPWRCVEEKDDDGLPRRAGRAWRPPTRSLHGTGPRRSRGRALMELDERKDDGDAICTTVRALSRRPGNDAVWNLMQRVAMERGVEQADGGFHGEQVEALVSRHRERPQGLLHRAHDAAIWNRAKHALRLYSHAHATRPEEPLPILCLAMHICRTVTVMETMVENDGVCVLQALACLHRYAHLRKEQAQSAGEEDPTVGSTSGSADATIPEAVLEQEIMYNLGRAYHQVGLPELAMEYYSRALQVKDERGDELRSWQGSDDGVTKETAHNMCALYKRNGQTAMALSVLNKYLAVG 1076
BLAST of mRNA_H-elongata_contig56682.13115.1 vs. uniprot
Match: W7TY69_9STRA (Transcription factor iiic-gamma subunit n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TY69_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 2.710e-12 Identity = 71/253 (28.06%), Postives = 112/253 (44.27%), Query Frame = 1
Query: 1876 SICTIVRALSTTPGNDATWNLLQRVIMKRGAEIADGGFHGENVEALVSRHREQAQGLLFRGNGSVIWNRSKHALRMYRQAHVLRPKEPLPMLSLATLSIRMLTVMDTLVEIDGVCVLQALACLHRYADLRSPRAATNAM--RSGTISTGLVSSTPV---------------PEAVLQQEIMYNLGRGYHQVGLAELAIEYYNRALRVKDERGHELRNWHGGDGVTRETAHNLCVLYKRTGATAMALRILQKYL 2583
+I + + +LS P + N L R++ K A+ + + + E L GN + + AL + A+ + P EPL L+ A L +R+L+ LV G C+++ LA L +YA LR + + R G+ S L+QE++YN+GR +HQ GL +A+ +Y AL + D ELR G VTRE A NL +YK +A ++ +YL
Sbjct: 787 AIKSCIVSLSALPTSIERGNALNRLVRKATRADANRAV----IRRMAHKTPESLPLALLSGNAFALSRNYQMALDKFLGAYRMAPSEPLVTLAAAALLMRVLS-HRKLVARHG-CLVKCLAFLEQYARLRLVQGVEEDVLKREAGDGGGMEDSNGAHGRDMEERGERLVKGATRALEQEVVYNMGRAFHQAGLLHMAVPFYQDALTIFDRYQEELRTVDGKGHVTREAAWNLVCIYKEGECRELARLVVGRYL 1033
BLAST of mRNA_H-elongata_contig56682.13115.1 vs. uniprot
Match: A0A4D9D396_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D396_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 5.250e-12 Identity = 69/253 (27.27%), Postives = 114/253 (45.06%), Query Frame = 1
Query: 1876 SICTIVRALSTTPGNDATWNLLQRVIMKRGAEIADGGFHGENVEALVSRHREQAQGLLFRGNGSVIWNRSKHALRMYRQAHVLRPKEPLPMLSLATLSIRMLTVMDTLVEIDGVCVLQALACLHRYADLRSPRAATNAM--RSGTISTGLVSSTPV---------------PEAVLQQEIMYNLGRGYHQVGLAELAIEYYNRALRVKDERGHELRNWHGGDGVTRETAHNLCVLYKRTGATAMALRILQKYL 2583
+I + + +LS P + N L R++ K A+ + + + E L GN + + AL + A+ + P EPL L++A L +R+L+ LV+ G C+++ LA L +YA LR + + R G+ S L+QE++YN+GR +HQ GL +A+ +Y AL + D ELR VTRE A NL +Y+ +A ++++YL
Sbjct: 1141 AIKSCIVSLSALPTSIERGNALNRLVRKATRADANRAV----IRRMAHKTPESLPLALLSGNAFALSRNYQMALDKFLGAYRMAPSEPLVTLAVAALLMRVLS-HRKLVDRHG-CLVKCLAFLEQYARLRLVQGVEEDVLKREAGDGGGMEDSNGAHGRDMEERGERLVKGATRALEQEVVYNMGRAFHQAGLLHMAVPFYQDALTIFDRYQEELRTVDDKGYVTREAAWNLVCIYREGECRELARLVVERYL 1387
BLAST of mRNA_H-elongata_contig56682.13115.1 vs. uniprot
Match: K3WLF4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLF4_GLOUD) HSP 1 Score: 77.0 bits (188), Expect = 1.110e-10 Identity = 62/228 (27.19%), Postives = 101/228 (44.30%), Query Frame = 1
Query: 1912 PGNDATWNLLQRVIMKRGAEIADGGFHGENVEALVSRHREQAQGLLFRGNGSVIWNRSKHALRMYRQAHVLRPKEPLPM--LSLATLSIRMLTVMDTLVEIDGVCVLQALACLHRYADLRSPRAATNAMRSGTISTGLVSSTPVPEAVLQQEIMYNLGRGYHQVGLAELAIEYYNRALRVKDERGHELRNWHGGDGVTRETAHNLCVLYKRTGATAMALRILQKYLSI 2589
P N WNL RVI G +H + + L+ ++ G+ S W+ + + + AH +P +PL + + LA LS M + V +A A L Y R + + + + + +LQ E YN+GR + Q+GL LAI Y R LR + E + + RETA+NL ++YK++GA +A ++ KYL++
Sbjct: 632 PQNLGYWNLFARVIAITGVY----SWHQKFLAKLLRDEPSSFPAIVLAGHQSSTWDIASLTVGEFTLAHQKQPSDPLILFCIGLAFLSASM----QRTINDRQHTVAKAFAFLQHYERTR-----------------VAAESAIDKEILQVECWYNIGRAHQQLGLFHLAIPMYERVLRFFELSKKEQKEIPPEYWICRETAYNLSLIYKQSGAHDLARYLISKYLTL 834
BLAST of mRNA_H-elongata_contig56682.13115.1 vs. uniprot
Match: A0A024U4N5_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U4N5_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 2.010e-10 Identity = 67/226 (29.65%), Postives = 110/226 (48.67%), Query Frame = 1
Query: 1912 PGNDATWNLLQRVIMKRGAEIADGGFHGENVEALVSRHREQAQGLLFRGNGSVIWNRSKHALRMYRQAHVLRPKEPLPMLSLATLSIRMLTVMDTLVEIDGVCVLQALACLHRYADLRSPRAATNAMRSGTISTGLVSSTPVPEAVLQQEIMYNLGRGYHQVGLAELAIEYYNRALRVKDERGHELRNWHGGDGVTRETAHNLCVLYKRTGATAMALRILQKYLSI 2589
P N WNL VI + G +H + + ++ +H + ++ G S + ++ A+ AH+ RP++PL + + LS +++ T+V+ + V +A A L Y R + N S GL S Q E YN+GR YHQ+ L LAI Y R LR +G ++ + + RETA+NL ++YK++GAT +A +L YL++
Sbjct: 706 PENVGYWNLFGHVINQTGVF----SWHQKFLAKVLRQHPKCYPAMVLAGLHSSASDSAQLAVGELTLAHLQRPEDPLALFCIG-LSYLNMSMFRTVVD-RQMTVAKAFAFLQLYQQTRFKQLEAN-------SIGLTSELG------QVESWYNIGRAYHQLELNHLAIAMYERVLRFY--QGKQVAPEYQ---LCRETAYNLSLIYKQSGATDLASYLLHTYLTV 907
BLAST of mRNA_H-elongata_contig56682.13115.1 vs. uniprot
Match: A0A0P1A6F0_PLAHL (RNA polymerase III transcription factor TFIIIC n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A6F0_PLAHL) HSP 1 Score: 76.3 bits (186), Expect = 2.020e-10 Identity = 65/228 (28.51%), Postives = 99/228 (43.42%), Query Frame = 1
Query: 1912 PGNDATWNLLQRVIMKRGAEIADGGFHGENVEALVSRHREQAQGLLFRGNGSVIWNRSKHALRMYRQAHVLRPKEPLPM--LSLATLSIRMLTVMDTLVEIDGVCVLQALACLHRYADLRSPRAATNAMRSGTISTGLVSSTPVPEAVLQQEIMYNLGRGYHQVGLAELAIEYYNRALRVKDERGHELRNWHGGDGVTRETAHNLCVLYKRTGATAMALRILQKYLSI 2589
P N WNL RVI G +H + + L+ E +L G+ S W+ + + AH P + L + + LA LS M + V +A A L +Y R + + + +P + Q E YN+GR + Q+GL LAI Y R LR +E R + RETA+NL ++YK++GA +A ++ KYL+I
Sbjct: 714 PQNLGYWNLFSRVIAITGVF----SWHQKFLAKLLHDDPESYPAILLAGHQSSAWDIASLTVGELTLAHQKHPNDSLTLFCIGLAFLSASM----QRTINDRQHTVAKAFAFLQQYERTR-----------------ISAPSDIPTELRQIEASYNIGRAHQQLGLFHLAIPMYERVLRFFEESKKHKRVIPSEYLICRETAYNLSLIYKQSGANDLARYLIAKYLTI 916
BLAST of mRNA_H-elongata_contig56682.13115.1 vs. uniprot
Match: A0A484E1M1_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E1M1_BRELC) HSP 1 Score: 76.3 bits (186), Expect = 2.040e-10 Identity = 65/228 (28.51%), Postives = 98/228 (42.98%), Query Frame = 1
Query: 1912 PGNDATWNLLQRVIMKRGAEIADGGFHGENVEALVSRHREQAQGLLFRGNGSVIWNRSKHALRMYRQAHVLRPKEPLPM--LSLATLSIRMLTVMDTLVEIDGVCVLQALACLHRYADLRSPRAATNAMRSGTISTGLVSSTPVPEAVLQQEIMYNLGRGYHQVGLAELAIEYYNRALRVKDERGHELRNWHGGDGVTRETAHNLCVLYKRTGATAMALRILQKYLSI 2589
P N WNL RVI G +H + + L+ E +L G+ S W+ + + AH +PL + + LA LS M + V +A A L +Y R + + + + Q E YN+GR + Q+GL LAI Y R LR +E RN + RETA+NL ++YK++GA +A ++ KYL+I
Sbjct: 736 PHNLGYWNLFSRVIAITGVF----SWHQKFLAKLLRDDPESYPAILLAGHQSSAWDIASLTVGELTLAHQKHTNDPLTLFCIGLAFLSASM----QRTINDRQHTVAKAFAFLQQYEQTR-----------------ITAPSDINSKFRQIEAWYNIGRAHQQLGLFHLAIPMYERVLRFIEESKELKRNVPPEYMICRETAYNLSLIYKQSGANDLARYLIAKYLTI 938
BLAST of mRNA_H-elongata_contig56682.13115.1 vs. uniprot
Match: A0A3M6VJR9_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJR9_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 2.690e-10 Identity = 64/229 (27.95%), Postives = 101/229 (44.10%), Query Frame = 1
Query: 1912 PGNDATWNLLQRVIMKRGAEIADGGFHGENVEALVSRHREQAQGLLFRGNGSVIWNRSKHALRMYRQAHVLRPKEPLPM--LSLATLSIRMLTVMDTLVEIDGVCVLQALACLHRYADLRSPRAATNAMRSGTISTGLVSSTPVPEAVLQQEIMYNLGRGYHQVGLAELAIEYYNRALRVKDERGHELRNWHGGDGVTRETAHNLCVLYKRTGATAMALRILQKYLSIG 2592
P N WNL RVI G +H + + L+ E +L G+ S W+ + + AH P +PL + + LA LS M + V +A A L +Y +R + + + + + Q E YN+GR + Q+GL LAI Y R LR + + + + RETA+NL ++YK++GA +A ++ KYL+IG
Sbjct: 739 PHNLGYWNLFSRVIAITGVF----SWHQKFLAKLLRDAPESYPAILLAGHQSSAWDIASLTVGELTLAHQKHPNDPLTIFCIGLAFLSASM----QRTINDRQHTVAKAFAFLQQYERVR-----------------ITAPSDISPDIRQVEAWYNIGRAHQQLGLFHLAIAMYERVLRFFETCKKQKHDVPPQYLLCRETAYNLSLIYKQSGANDLARYLIAKYLTIG 942
BLAST of mRNA_H-elongata_contig56682.13115.1 vs. uniprot
Match: UPI00174AEFAE (general transcription factor 3C polypeptide 3 isoform X3 n=1 Tax=Myotis myotis TaxID=51298 RepID=UPI00174AEFAE) HSP 1 Score: 75.1 bits (183), Expect = 4.410e-10 Identity = 63/222 (28.38%), Postives = 95/222 (42.79%), Query Frame = 1
Query: 1930 WNLLQRVIMKRGAEIADGGFHGENVEALVSRHREQAQGLLFRGNGSVIWNRSKHALRMYRQAHVLRPKEPLPMLSLATLSIRMLTVMDTLVEIDGVCVLQALACLHRYADLRSPRAATNAMRSGTISTGLVSSTPVPEAVLQQEIMYNLGRGYHQVGLAELAIEYYNRALRVKDE--RGHELRNWHGGDGVTRETAHNLCVLYKRTGATAMALRILQKYLSI 2589
WN+ +V M E+ H L+ +H E + G+ + + KHAL Y QA P +PL + + I M + L ++Q + L+RY LR P QE YN+GRG+HQ+GL+ LAI YY+RAL + G E+ + R+ A+NL ++Y+ +G MA R+L Y I
Sbjct: 672 WNMFNQVTM-HSQEVR----HHRFCLRLMLKHPENHALCVLNGHNAFVSGSFKHALGQYVQAFRTHPHDPLYSICIGLTFIHMASQKYVLKR--HALIVQGFSFLNRYLSLRGPC---------------------------QESFYNMGRGFHQLGLSHLAIHYYHRALELPPMAVEGIEVDQV----DLRRDIAYNLSLIYQNSGNVRMAQRLLYTYCVI 855
BLAST of mRNA_H-elongata_contig56682.13115.1 vs. uniprot
Match: UPI00174F4BCC (general transcription factor 3C polypeptide 3 isoform X5 n=1 Tax=Pipistrellus kuhlii TaxID=59472 RepID=UPI00174F4BCC) HSP 1 Score: 74.7 bits (182), Expect = 5.790e-10 Identity = 63/222 (28.38%), Postives = 94/222 (42.34%), Query Frame = 1
Query: 1930 WNLLQRVIMKRGAEIADGGFHGENVEALVSRHREQAQGLLFRGNGSVIWNRSKHALRMYRQAHVLRPKEPLPMLSLATLSIRMLTVMDTLVEIDGVCVLQALACLHRYADLRSPRAATNAMRSGTISTGLVSSTPVPEAVLQQEIMYNLGRGYHQVGLAELAIEYYNRALRVKDE--RGHELRNWHGGDGVTRETAHNLCVLYKRTGATAMALRILQKYLSI 2589
WN+ +V M E+ H L+ +H E + G+ + + KHAL Y QA P EPL + + I M + L ++Q + L+RY LR P QE YN+GRG+HQ+GL+ LAI YY +AL + G E+ + R+ A+NL ++Y+ +G MA R+L Y I
Sbjct: 671 WNMFNQVTM-HSQEVR----HHRFCLRLMLKHPENHALCVLNGHNAFVSGSFKHALGQYVQAFRTHPHEPLYSICIGLTFIHMASQKYVLKR--HALIVQGFSFLNRYLSLRGPC---------------------------QESFYNMGRGFHQLGLSHLAIHYYQKALELPPMVIEGIEVDQV----DLRRDIAYNLALIYQNSGNIRMAQRLLYTYCVI 854 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56682.13115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig56682.13115.1 >prot_H-elongata_contig56682.13115.1 ID=prot_H-elongata_contig56682.13115.1|Name=mRNA_H-elongata_contig56682.13115.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=865bp MSRSTRKALDVYAKAAKRFPRRYDIYLDLAEGVECVSPQQHIFIHQALASback to top mRNA from alignment at H-elongata_contig56682:271..3220+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig56682.13115.1 ID=mRNA_H-elongata_contig56682.13115.1|Name=mRNA_H-elongata_contig56682.13115.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2950bp|location=Sequence derived from alignment at H-elongata_contig56682:271..3220+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig56682:271..3220+ >mRNA_H-elongata_contig56682.13115.1 ID=mRNA_H-elongata_contig56682.13115.1|Name=mRNA_H-elongata_contig56682.13115.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5190bp|location=Sequence derived from alignment at H-elongata_contig56682:271..3220+ (Himanthalia elongata Himel1 dioecious)back to top |