mRNA_H-elongata_contig56473.13096.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig56473.13096.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 276 bits (707), Expect = 9.940e-88 Identity = 146/313 (46.65%), Postives = 192/313 (61.34%), Query Frame = 1
Query: 4 YEDETGFVILTLYVDDILFLSASKTLINKLKKQLMDQFEMSDISDVSRILGMNVTRDREKRTITISQKDYTEDMVTRF---------------------------------------------------DILYAVNQLARTMSKPAKAYLGATKHLFRYLAISADFSITYKQGGFSLAAFSDVNWGNDPDNGRSK*SYIVMLANAPVSFKVGLQGLTTQSMMEAELVVAALTMKEAVFCSNVILKLGFDESFGSVPLYIDSTSALHVAGNRTYSPRAMHIALRYFFVQGLVEDGKISIHYVKAEDQLADLGTK 789
Y+ + LTLYVDD+L I+ +K +L +F+M+D+ + S +LGM + RDRE T+TISQ+ Y + ++ RF DI+YA QLAR M+KP+K ++ A KH RYLA + DFSITYK+GGF LA FSD NW N+PDNG+S SY+ MLANAP+SF+ GLQGLT S MEAELV +AL MKEAVFCSN++ +LGF + F +P+Y D+T+ LH GNR++S R HIALR+FF++ LV +GKISIHY ED LAD+GTK
Sbjct: 106 YDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTK 418
BLAST of mRNA_H-elongata_contig56473.13096.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 276 bits (707), Expect = 8.660e-83 Identity = 146/313 (46.65%), Postives = 193/313 (61.66%), Query Frame = 1
Query: 4 YEDETGFVILTLYVDDILFLSASKTLINKLKKQLMDQFEMSDISDVSRILGMNVTRDREKRTITISQKDYTEDMVTRF---------------------------------------------------DILYAVNQLARTMSKPAKAYLGATKHLFRYLAISADFSITYKQGGFSLAAFSDVNWGNDPDNGRSK*SYIVMLANAPVSFKVGLQGLTTQSMMEAELVVAALTMKEAVFCSNVILKLGFDESFGSVPLYIDSTSALHVAGNRTYSPRAMHIALRYFFVQGLVEDGKISIHYVKAEDQLADLGTK 789
Y+ + LTLYVDD+L I+ +K +L +F+M+D+ + S +L M + RDRE T+TISQ+ Y + ++ RF DI+YA QLAR M+KP+K ++ A KH RYLA + DFSITYK+GGF LA FSD NW N+PDNG+S SY+ MLANAP+SF+ GLQGLT S MEAELV +AL MKEAVFCSN++ +LGF + F +P+Y D+T+ LH GNR++S R HIALR+FF++ LV +GKISIHYV+ ED LAD+GTK
Sbjct: 666 YDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTK 978
BLAST of mRNA_H-elongata_contig56473.13096.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 271 bits (692), Expect = 1.870e-79 Identity = 144/313 (46.01%), Postives = 191/313 (61.02%), Query Frame = 1
Query: 4 YEDETGFVILTLYVDDILFLSASKTLINKLKKQLMDQFEMSDISDVSRILGMNVTRDREKRTITISQKDYTEDMVTRF---------------------------------------------------DILYAVNQLARTMSKPAKAYLGATKHLFRYLAISADFSITYKQGGFSLAAFSDVNWGNDPDNGRSK*SYIVMLANAPVSFKVGLQGLTTQSMMEAELVVAALTMKEAVFCSNVILKLGFDESFGSVPLYIDSTSALHVAGNRTYSPRAMHIALRYFFVQGLVEDGKISIHYVKAEDQLADLGTK 789
Y+ + LTLYVDD+L I+ +K +L +F+M+D+ + S +LGM + RDRE T+TISQ+ Y + ++ RF DI+YA QLAR M+KP+K ++ A KH RYLA + DFSITYK+GGF LA FSD NW N+PDNG+S SY+ +LANAP+SF+ GLQGLT S MEAELV +AL M EAVF SN++ +LGF + F +P+Y D+T+ LH GNR++S R HIALR+FF++ LV +GKISIHYV ED LAD+GTK
Sbjct: 1335 YDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTK 1647
BLAST of mRNA_H-elongata_contig56473.13096.1 vs. uniprot
Match: A0A6H5J6N1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6N1_9PHAE) HSP 1 Score: 253 bits (646), Expect = 5.770e-78 Identity = 138/276 (50.00%), Postives = 185/276 (67.03%), Query Frame = 1
Query: 1 VYEDETGFVILTLYVDDILFLSASKTLINKLKKQLMDQFEMSDISDVSRILGMNVTRDREKRTITISQKDYTEDMVTRFDI-------LYAV--------------------NQLARTMSKPAKAYLGATKHLFRYLAISADFSITYKQGGFSLAAFSDVNWGNDPDNGRSK*SYIVMLANAPVSFKVGLQGLTTQSMMEAELVVAALTMKEAVFCSNVILKLGFDESFGSVPLYIDSTSALHVAGNRTYSPRAMHIALRYFFVQGLVEDGKISIH 747
+Y+ VI+TLYVDD++ + + +I +K +LM+QF+MS + +VS +LGM VTRD E T+TI+Q DYT ++ RF + + +V +QLAR MSK AKA++GA KHL R + DF ITYK+GGF L AFSD NW ++PDN RS SY++M++ APVSFK GLQ LT S MEAEL+ AALTMKEAVFCSN++ +LGF + FG VPLYI++T+ LHV GN+ YS R HIAL +F V+ LV++G I+IH
Sbjct: 228 IYKRNHTIVIITLYVDDLVVIGGNIEVIEAIKTKLMEQFQMSVLGNVSLVLGMQVTRDGEHGTLTITQADYTRSILARFGMEECKPTSIPSVGSELSTEQPTETVLNKEKTQSQLARVMSKAAKAHMGAAKHLLRG---TQDFCITYKRGGFKLTAFSDANWESNPDNARSTSSYMIMMSKAPVSFKTGLQDLTVMSTMEAELLAAALTMKEAVFCSNMMTELGFGQQFGQVPLYINNTATLHVIGNQAYSSRTKHIALLFFCVRELVKEGAITIH 500
BLAST of mRNA_H-elongata_contig56473.13096.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE) HSP 1 Score: 236 bits (601), Expect = 1.000e-74 Identity = 113/188 (60.11%), Postives = 141/188 (75.00%), Query Frame = 1
Query: 226 VTRFDILYAVNQLARTMSKPAKAYLGATKHLFRYLAISADFSITYKQGGFSLAAFSDVNWGNDPDNGRSK*SYIVMLANAPVSFKVGLQGLTTQSMMEAELVVAALTMKEAVFCSNVILKLGFDESFGSVPLYIDSTSALHVAGNRTYSPRAMHIALRYFFVQGLVEDGKISIHYVKAEDQLADLGTK 789
V R+DI+YA LAR M+KP+K + K RYLA + DFSITYK+GGF LA FSD NW N+PDNG+S SY+ MLANAP+SF+ GLQGLT S MEAELV +AL MKEAVFCSN++ +LGF + F +P+Y D+T+ LH GNR++S R HIALR+FF++ LV +GKISIHY ED LA +GTK
Sbjct: 6 VLRYDIMYATGHLARPMAKPSKVHTVTAKQTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTK 193
BLAST of mRNA_H-elongata_contig56473.13096.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 245 bits (626), Expect = 2.250e-73 Identity = 117/188 (62.23%), Postives = 147/188 (78.19%), Query Frame = 1
Query: 226 VTRFDILYAVNQLARTMSKPAKAYLGATKHLFRYLAISADFSITYKQGGFSLAAFSDVNWGNDPDNGRSK*SYIVMLANAPVSFKVGLQGLTTQSMMEAELVVAALTMKEAVFCSNVILKLGFDESFGSVPLYIDSTSALHVAGNRTYSPRAMHIALRYFFVQGLVEDGKISIHYVKAEDQLADLGTK 789
V R+DI+YA QLAR+M+KP+K ++ A KH RYLA + DFSITYK+GGF LA FSD NW N+PDNG+S SY+ MLANAP+SF+ GLQGLT S MEAELV +AL MKEAVFCSN++ +LG + F +P+Y D+T+ LH GNR++S R HIALR+FF++ LV +GKISIHYV ED LAD+GTK
Sbjct: 452 VLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTK 639
BLAST of mRNA_H-elongata_contig56473.13096.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE) HSP 1 Score: 239 bits (609), Expect = 6.380e-69 Identity = 112/188 (59.57%), Postives = 147/188 (78.19%), Query Frame = 1
Query: 226 VTRFDILYAVNQLARTMSKPAKAYLGATKHLFRYLAISADFSITYKQGGFSLAAFSDVNWGNDPDNGRSK*SYIVMLANAPVSFKVGLQGLTTQSMMEAELVVAALTMKEAVFCSNVILKLGFDESFGSVPLYIDSTSALHVAGNRTYSPRAMHIALRYFFVQGLVEDGKISIHYVKAEDQLADLGTK 789
+TR+DI+Y +QLAR MS P+K ++GA KHL RYL+ S DFSITYK+GGF L A SD NWGN+PDN +S SYI+M++ APVSFK GLQ LT S +EAELV AAL MKE +FC+N++ +LGF F S PLYI+ T+ LHV GN+T+S R H+ALR+F+++ +V++G+ISIHY+ ED LAD+GTK
Sbjct: 485 ITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYIN-TATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTK 671
BLAST of mRNA_H-elongata_contig56473.13096.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE) HSP 1 Score: 232 bits (592), Expect = 8.550e-68 Identity = 131/313 (41.85%), Postives = 179/313 (57.19%), Query Frame = 1
Query: 4 YEDETGFVILTLYVDDILFLSASKTLINKLKKQLMDQFEMSDISDVSRILGMNVTRDREKRTITISQKDYTEDMVTRF---------------------------------------------------DILYAVNQLARTMSKPAKAYLGATKHLFRYLAISADFSITYKQGGFSLAAFSDVNWGNDPDNGRSK*SYIVMLANAPVSFKVGLQGLTTQSMMEAELVVAALTMKEAVFCSNVILKLGFDESFGSVPLYIDSTSALHVAGNRTYSPRAMHIALRYFFVQGLVEDGKISIHYVKAEDQLADLGTK 789
Y+ + + LTL VDD+L + +S S I GM + RDRE+ T++IS++ Y++ ++ RF DI+YA +QLAR M+KP+K ++GA K FRYLA + F I YK+GGF L AF+D NWGN+PDNG+S S++ ML +AP++FK GLQ LTTQS ME ELV AAL +KEAVFCSN++ +LGF + VPLY D+T+ LH GNR+YS HIALR+FF++ LV +G+I+IHYV A+ AD+GTK
Sbjct: 405 YDHDGSQMYLTLSVDDLLLAGNNS----------------DALSIASLISGMEIKRDRERGTLSISREAYSKSILDRFGMSACKPTSTPGLGPGPSNVQPEETLLNQEETRRYQGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTK 701
BLAST of mRNA_H-elongata_contig56473.13096.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 229 bits (583), Expect = 2.730e-66 Identity = 120/275 (43.64%), Postives = 176/275 (64.00%), Query Frame = 1
Query: 1 VYEDETGFVILTLYVDDILFL-SASKTLINKLKKQLMDQFEMSDISDVSRI-LGMNVTRDREKRTITISQKDYTED----------MVTRFDILYAVNQLARTMSKPAKAYLGATKHLFRYLAISADFSITYKQGGFSLAAFSDVNWGNDPDNGRSK*SYIVMLANAPVSFKVGLQGLTTQSMMEAELVVAALTMKEAVFCSNVILKLGFDESFGSVPLYIDSTSALHVAGNRTYSPRAMHIALRYFFVQGLVEDGKISIHYVKAEDQLADLGTK 789
+Y+ V+LTLYVDD+L + + ++D+F M +S G ++ + + T+ ++ VTR+DI+Y +Q AR MS P+K ++GA KHL RYL+ S DFSITYK+GGF L A S+ N G++ DNG+S SYI+M++ AP S K GLQ LT S +EAELV +AL MKE +FC+N++ +LGF F S PL+IDST+ L+V GN+T+S H+ALR+F+++ +V++G+ISIHY+ ED LAD+GT+
Sbjct: 485 IYDHNNTVVVLTLYVDDLLIIRGGAHHQPGNYTTSILDRFGMGSCKPLSTAGFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTE 759
BLAST of mRNA_H-elongata_contig56473.13096.1 vs. uniprot
Match: A0A6H5KNV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV2_9PHAE) HSP 1 Score: 205 bits (522), Expect = 6.440e-62 Identity = 98/158 (62.03%), Postives = 122/158 (77.22%), Query Frame = 1
Query: 226 VTRFDILYAVNQLARTMSKPAKAYLGATKHLFRYLAISADFSITYKQGGFSLAAFSDVNWGNDPDNGRSK*SYIVMLANAPVSFKVGLQGLTTQSMMEAELVVAALTMKEAVFCSNVILKLGFDESFGSVPLYIDSTSALHVAGNRTYSPRAMHIALR 699
V R+DI+YA QLAR M+KP+K ++ A KH RYLA + DFSITYK+GGF LA FSD NW N+PDNG+S SY+ MLANAP+SF+ GLQGLT S MEAELV +AL MKEAVFCSN++ +LGF + F +P+Y D+T+ LH GNR++S R HIALR
Sbjct: 108 VLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALR 265 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56473.13096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig56473.13096.1 >prot_H-elongata_contig56473.13096.1 ID=prot_H-elongata_contig56473.13096.1|Name=mRNA_H-elongata_contig56473.13096.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp MLANAPVSFKVGLQGLTTQSMMEAELVVAALTMKEAVFCSNVILKLGFDEback to top mRNA from alignment at H-elongata_contig56473:1460..2401- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig56473.13096.1 ID=mRNA_H-elongata_contig56473.13096.1|Name=mRNA_H-elongata_contig56473.13096.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=942bp|location=Sequence derived from alignment at H-elongata_contig56473:1460..2401- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig56473:1460..2401- >mRNA_H-elongata_contig56473.13096.1 ID=mRNA_H-elongata_contig56473.13096.1|Name=mRNA_H-elongata_contig56473.13096.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig56473:1460..2401- (Himanthalia elongata Himel1 dioecious)back to top |