mRNA_H-elongata_contig5646.13095.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5646.13095.1
Unique NamemRNA_H-elongata_contig5646.13095.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5646.13095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5646contigH-elongata_contig5646:3829..5763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size733
Cds size714
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5646.13095.1prot_H-elongata_contig5646.13095.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5646 3829..5744 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930918.9842713-CDS-H-elongata_contig5646:3828..39301622930918.9842713-CDS-H-elongata_contig5646:3828..3930Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5646 3829..3930 -
1691679624.5425663-CDS-H-elongata_contig5646:3828..39301691679624.5425663-CDS-H-elongata_contig5646:3828..3930Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5646 3829..3930 -
1622930919.0050924-CDS-H-elongata_contig5646:4300..45191622930919.0050924-CDS-H-elongata_contig5646:4300..4519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5646 4301..4519 -
1691679624.5516522-CDS-H-elongata_contig5646:4300..45191691679624.5516522-CDS-H-elongata_contig5646:4300..4519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5646 4301..4519 -
1622930919.019193-CDS-H-elongata_contig5646:4912..52751622930919.019193-CDS-H-elongata_contig5646:4912..5275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5646 4913..5275 -
1691679624.5624533-CDS-H-elongata_contig5646:4912..52751691679624.5624533-CDS-H-elongata_contig5646:4912..5275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5646 4913..5275 -
1622930919.0327172-CDS-H-elongata_contig5646:5714..57441622930919.0327172-CDS-H-elongata_contig5646:5714..5744Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5646 5715..5744 -
1691679624.5749419-CDS-H-elongata_contig5646:5714..57441691679624.5749419-CDS-H-elongata_contig5646:5714..5744Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5646 5715..5744 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930919.0478625-UTR-H-elongata_contig5646:5744..57631622930919.0478625-UTR-H-elongata_contig5646:5744..5763Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5646 5745..5763 -
1691679624.5861769-UTR-H-elongata_contig5646:5744..57631691679624.5861769-UTR-H-elongata_contig5646:5744..5763Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5646 5745..5763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5646.13095.1

>prot_H-elongata_contig5646.13095.1 ID=prot_H-elongata_contig5646.13095.1|Name=mRNA_H-elongata_contig5646.13095.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=238bp
MMRGQHRGFEPGHRMDGGGNAETTTGDSRAPSHNQYSILQHPRFSEDSRE
SAPAVSDYDGRGQKGGVGLGGGGDVAASGDHRHASARATVSTRHHGGGAT
GAPPGFIKAYEYMEYDHRANGGKLSDEGRAGHAATARPLHRVDELLRSQP
DGSLGSGEGLSWESAGPPERVGRGMSGGSAGEMDYAEIYAPRREAHEVPG
ARHAGHQGYDAGYEGHQGVGVHFEGGVSGVSGVSGVSG
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mRNA from alignment at H-elongata_contig5646:3829..5763-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5646.13095.1 ID=mRNA_H-elongata_contig5646.13095.1|Name=mRNA_H-elongata_contig5646.13095.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1935bp|location=Sequence derived from alignment at H-elongata_contig5646:3829..5763- (Himanthalia elongata Himel1 dioecious)
GGATAGCCATCAGTTCGCCATGATGCGCGGGCAACACCGAGGGTTTGAGG
TGTGCTATATTTTTTGTCTGGCTTGAAAAAGGGGCAGGCGTTTATCTATG
TCTACACGCTCGGGTCGAGGTATTTCGAAGAGGCATGGTAGTTTTCGACT
TTGGGAACACAGCGCCTTTGGTCCGACTTTTGTGAAACACGAGGCAGAAA
TGGTCGTGCGATATTTTCTTGGATCTGCAATAATTTGACAAAATGCGAAA
CAACCCAGCAGTACGAGGGCCAAAAAAAGCGAGCCATGAAAGCCATATAA
ATGAACCCACGACCATAATTATCATCTCAATTCGCTTTTATTCGCTTTTC
TGGCTAAATCTGCGCACACGGACGTTCCAAAGGCGGCAGTAGTAATATTT
TTCTACTTTGTAAACGCCAGTAACACCTCCCGTCTCCCCGCCTCTGTACC
CTTATCGATTTCTGACTCATATATGTTGCTGTCTCCAGCCGGGACATCGC
ATGGACGGCGGTGGAAATGCCGAAACTACAACAGGCGATAGTAGAGCCCC
CAGCCACAACCAGTACTCCATTTTGCAGCATCCGCGCTTCTCTGAGGATT
CCCGGGAATCCGCCCCCGCAGTGAGCGACTACGACGGCAGGGGACAAAAG
GGAGGAGTTGGACTTGGAGGAGGCGGTGACGTCGCGGCTTCCGGGGACCA
TCGCCACGCGTCGGCGCGCGCCACGGTGTCTACGCGTCATCACGGGGGGG
GGGCGACGGGAGCGCCCCCGGGGTTTATAAAGGCCTACGAGTACATGGAG
TACGACCACAGGGCAAACGGGGGGAAGCTGTCAGACGAGGGTCGCGCTGG
CGGGCATCTGCAAGCGCTGATGCCTCGGGCTCAGCAGCAGCATGAGCAGC
AGCACCAGCACGTGAGGAATCAGCTAGGGTTACTCCAGTCCCTCGAGGAT
CATATCGACATTTTTATCGGGTGTCTTGCCCTTGTAGTTGTCCTTGTGCA
GCCGCTCTGTCTTGTTCATCGAAGCCTAGAAACTCGCGCACGGGGTAAAG
ATAAGCTGCTGCTGCGACTCCTCCGTTTTGCGCCTCTTGAGCGTTGATCT
TGGCGCGCTATCTACAGACCCCCTAAAATAACCCCTCTTTATCTTCCCGC
ACAACACTCTCATTTTTTTGGCGTGCAGCGCGGAAGCGTCCTGATTCCTC
CCGCACATCCTCAGGGCGCACTGCCTCCTGAGCACCTGCAACTCCATGCA
GCTACCGCGCGGCCGTTGCATAGGGTAGATGAGTTGTTGCGCTCTCAGCC
AGACGGCTCACTGGGGTCGGGCGAGGGACTGAGCTGGGAGAGCGCCGGGC
CTCCGGAACGGGTGGGTCGGGGGATGTCCGGTGGATCCGCTGGCGAAATG
GACTACGCCGAGATCTATGCGCCTCGGAGGGAGGCACACGAAGTGCCCGG
TGCCCGGCATGCGGTGAGTACGAGCGTGATGTGGAAACCTCCGGACCGAG
GTTTTATTTATTGGATATAGAAGGTGAAAGCATCGATTAGCGAGAAAGAA
ACAGAGCTGCTGCTGCTAGCGGGGTGACTCCGGCAGGCGTGTAGGCGTGG
AAATATCGACGCGCTGCTTTTCGGAGTGGAGTCTATTTTTGTTTTGAGCA
ATTCGATCCGGCCTGTATACGATAATGTAGTGCATATTTGGCTGTTATTT
GGCTGTTCCCTTTCTATCTCGAGACTTCTGCATTTAGTAGTCCCACGCCA
CCTTTCCAGTCCTTGCCGTCTCTCACTCAAGAAGTGGTCGACGTGCGTGG
TCTCTTCTCCTTTTTCGATACGATCGACCGCAGGGGCACCAGGGCTATGA
CGCCGGCTACGAAGGGCACCAAGGCGTGGGAGTTCACTTCGAAGGCGGTG
TTAGCGGTGTTAGCGGTGTTAGCGGCGTTAGCGGT
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Coding sequence (CDS) from alignment at H-elongata_contig5646:3829..5763-

>mRNA_H-elongata_contig5646.13095.1 ID=mRNA_H-elongata_contig5646.13095.1|Name=mRNA_H-elongata_contig5646.13095.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1428bp|location=Sequence derived from alignment at H-elongata_contig5646:3829..5763- (Himanthalia elongata Himel1 dioecious)
ATGATGCGCGGGCAACACCGAGGGTTTGAGATGATGCGCGGGCAACACCG
AGGGTTTGAGCCGGGACATCGCATGGACGGCGGTGGAAATGCCGAAACTA
CAACAGGCGATAGTAGAGCCCCCAGCCACAACCAGTACTCCATTTTGCAG
CATCCGCGCTTCTCTGAGGATTCCCGGGAATCCGCCCCCGCAGTGAGCGA
CTACGACGGCAGGGGACAAAAGGGAGGAGTTGGACTTGGAGGAGGCGGTG
ACGTCGCGGCTTCCGGGGACCATCGCCACGCGTCGGCGCGCGCCACGGTG
TCTACGCGTCATCACGGGGGGGGGGCGACGGGAGCGCCCCCGGGGTTTAT
AAAGGCCTACGAGTACATGGAGTACGACCACAGGGCAAACGGGGGGAAGC
TGTCAGACGAGGGTCGCGCTGGCCCGGGACATCGCATGGACGGCGGTGGA
AATGCCGAAACTACAACAGGCGATAGTAGAGCCCCCAGCCACAACCAGTA
CTCCATTTTGCAGCATCCGCGCTTCTCTGAGGATTCCCGGGAATCCGCCC
CCGCAGTGAGCGACTACGACGGCAGGGGACAAAAGGGAGGAGTTGGACTT
GGAGGAGGCGGTGACGTCGCGGCTTCCGGGGACCATCGCCACGCGTCGGC
GCGCGCCACGGTGTCTACGCGTCATCACGGGGGGGGGGCGACGGGAGCGC
CCCCGGGGTTTATAAAGGCCTACGAGTACATGGAGTACGACCACAGGGCA
AACGGGGGGAAGCTGTCAGACGAGGGTCGCGCTGGCCATGCAGCTACCGC
GCGGCCGTTGCATAGGGTAGATGAGTTGTTGCGCTCTCAGCCAGACGGCT
CACTGGGGTCGGGCGAGGGACTGAGCTGGGAGAGCGCCGGGCCTCCGGAA
CGGGTGGGTCGGGGGATGTCCGGTGGATCCGCTGGCGAAATGGACTACGC
CGAGATCTATGCGCCTCGGAGGGAGGCACACGAAGTGCCCGGTGCCCGGC
ATGCGCATGCAGCTACCGCGCGGCCGTTGCATAGGGTAGATGAGTTGTTG
CGCTCTCAGCCAGACGGCTCACTGGGGTCGGGCGAGGGACTGAGCTGGGA
GAGCGCCGGGCCTCCGGAACGGGTGGGTCGGGGGATGTCCGGTGGATCCG
CTGGCGAAATGGACTACGCCGAGATCTATGCGCCTCGGAGGGAGGCACAC
GAAGTGCCCGGTGCCCGGCATGCGGGGCACCAGGGCTATGACGCCGGCTA
CGAAGGGCACCAAGGCGTGGGAGTTCACTTCGAAGGCGGTGTTAGCGGTG
TTAGCGGTGTTAGCGGCGTTAGCGGTGGGCACCAGGGCTATGACGCCGGC
TACGAAGGGCACCAAGGCGTGGGAGTTCACTTCGAAGGCGGTGTTAGCGG
TGTTAGCGGTGTTAGCGGCGTTAGCGGT
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