mRNA_H-elongata_contig56443.13093.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56443.13093.1
Unique NamemRNA_H-elongata_contig56443.13093.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56443.13093.1 vs. uniprot
Match: D8LMW5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW5_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 3.650e-11
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:  226 LFGIKRKVKVDLQENFSGKVVDTSGPMSGMLGGDANGLFEVIERNKKKDVE 378
            L GIKRKVKV+++ENFSGKVV+ +G  + M G DAN LF+VIE+NKKK  E
Sbjct:   67 LHGIKRKVKVEMEENFSGKVVEPAGAATSMFGSDANALFDVIEKNKKKAAE 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56443.13093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMW5_ECTSI3.650e-1164.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56443contigH-elongata_contig56443:377..2129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_003890.1
Exons2
Model size790
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56443.13093.1prot_H-elongata_contig56443.13093.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56443 392..1846 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930918.801661-UTR-H-elongata_contig56443:376..3911622930918.801661-UTR-H-elongata_contig56443:376..391Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56443 377..391 +
1691679624.475993-UTR-H-elongata_contig56443:376..3911691679624.475993-UTR-H-elongata_contig56443:376..391Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56443 377..391 +
1622930918.8762426-UTR-H-elongata_contig56443:1846..21291622930918.8762426-UTR-H-elongata_contig56443:1846..2129Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56443 1847..2129 +
1691679624.510062-UTR-H-elongata_contig56443:1846..21291691679624.510062-UTR-H-elongata_contig56443:1846..2129Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56443 1847..2129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930918.8402462-CDS-H-elongata_contig56443:391..6461622930918.8402462-CDS-H-elongata_contig56443:391..646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56443 392..646 +
1691679624.4879608-CDS-H-elongata_contig56443:391..6461691679624.4879608-CDS-H-elongata_contig56443:391..646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56443 392..646 +
1622930918.860062-CDS-H-elongata_contig56443:1609..18461622930918.860062-CDS-H-elongata_contig56443:1609..1846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56443 1610..1846 +
1691679624.5013564-CDS-H-elongata_contig56443:1609..18461691679624.5013564-CDS-H-elongata_contig56443:1609..1846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56443 1610..1846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56443.13093.1

>prot_H-elongata_contig56443.13093.1 ID=prot_H-elongata_contig56443.13093.1|Name=mRNA_H-elongata_contig56443.13093.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
MGRAESSSGTASQSRLVSSCAVLKLAFVSALLGERYAAPVAAFCATTSSR
AFASRSGGGGGAAARRSCFELFGIKRKVKVDLQENFSGKVVDTSGPMSGM
LGGDANGLFEVIERNKKKDVEAAAVAEAARHAAEEGASDKNLELEGADGG
DDDEEGHEEEDLA*
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mRNA from alignment at H-elongata_contig56443:377..2129+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56443.13093.1 ID=mRNA_H-elongata_contig56443.13093.1|Name=mRNA_H-elongata_contig56443.13093.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1753bp|location=Sequence derived from alignment at H-elongata_contig56443:377..2129+ (Himanthalia elongata Himel1 dioecious)
CAGGACATATCGAAGATGGGCAGAGCGGAGAGTTCATCAGGCACGGCGTC
GCAAAGCCGTTTGGTGAGCTCTTGCGCCGTCCTCAAATTGGCTTTCGTGA
GCGCTCTACTTGGAGAGCGGTACGCCGCACCCGTGGCTGCCTTCTGTGCG
ACCACTTCGTCGCGTGCGTTTGCTTCACGCAGTGGCGGTGGCGGGGGGGC
GGCGGCGAGACGTTCATGTTTCGAATTGTTTGGGATCAAGAGGAAGGTCA
AGGTTGATTTGCAGGAAAACGTGAGTAGCGGGTATCTCCGTCTCGGTGAA
ATGTTTGCTTCAACTCCGCCGACGAGAGGGAGTTCGTGGTGTAGGCATTT
CGTGGTTGCACATGACAATTATTATGATATTTGCTCTAAAATGCAGACGT
GTTTCGAGCTTCCACCATGGTATCATTAGTAAGAACGCAAGACTCTTCCG
CGATAGTTCTGGCCTTCGTTGTAACAAATATCTTGTTCGCGCGTAGATAT
ATATGGTAACCCCCCGGATGATGTATGCACGACCTATTGTGGATGATTCT
GGGTGACCGTGGTGATAAAGAGCCGGCGGTATACAACCCCATTTCACAGT
CGAATATATATATATATATATATATAAAGAGAGAGAGAGAGAGACCTGAA
GTGTGGGATACAAACCATACTCAGAAGCTGCTTGAATCGCTTGAGCAGCA
GCGCTAATACAGAGTGAACCGTGAGAACTACAATCCTGCTGCAAAATAGC
GTGCAAACTCGGTCTGTCTCTGCAAGAAGCGGACGGAATATAATTATACC
GTTCTACTCAAAACACACCCGCCCGGCGCTTTTTCCCGACTCCACTCATG
TATCTGTCCAACACAGTGTCGCATATTTAATTCGGGGAATAATCCTCCTC
GCTCTGGTACAACACCCCCATCGATCATCTTGTCAGAACAGCTTGTCAGG
CCTCGGGAAATAGAGCGCTCCGTGGGCACCAGTTACGATTTTCGCGTCTG
TCCGCATTATATGTTCAAAACTTACCAACGAGTACAGCCACCGCCCTTCT
GCATCCTCGCCATCTCCGCGGCGATCTTGAGACAGCCGCAAGCGCAGCTG
TGTGCTCTTCTCACACTAGCGTGGTTCACGTGAGTTGGGCCGAACCTTAC
CTTCCCGACGCAACGTTCCGCGCGAACTCCATTCGCGGCCTCACTTATTA
TGCCTGTGTTGTGCTTCCCATGTCACTGTGTAGTTTTCCGGCAAGGTCGT
CGACACCTCCGGACCCATGTCGGGAATGCTGGGGGGTGACGCTAATGGGT
TGTTTGAGGTGATCGAAAGGAACAAAAAGAAGGACGTAGAGGCCGCCGCC
GTTGCGGAAGCAGCGCGACACGCTGCAGAAGAAGGCGCGAGCGACAAGAA
CCTGGAGCTCGAGGGTGCCGACGGAGGTGACGATGATGAAGAGGGGCATG
AAGAAGAGGACCTCGCCTGACGACGATGAAGAATATATTTAAGGTTAAAA
AGAAACAGGGAGGCTTGTTGATACACCCCCGCCAGAGGGAAGGTCAAGAG
TCTTGGGGAAGATGATTTATAGAAACATATTGTATTGACAGCATAACATA
GGGGAAACACCATGGATGTCCGGACCTATCAATGGTACGCGTCACATAAA
AAACCAGTAAAGATCAGAGAAGACCAGAACGGATCTTAAAAGACTGACTA
CATGTGGGCTTTACCATACGTGATTATATGACCCTACACAACTGTATAAG
CGG
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Coding sequence (CDS) from alignment at H-elongata_contig56443:377..2129+

>mRNA_H-elongata_contig56443.13093.1 ID=mRNA_H-elongata_contig56443.13093.1|Name=mRNA_H-elongata_contig56443.13093.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at H-elongata_contig56443:377..2129+ (Himanthalia elongata Himel1 dioecious)
ATGGGCAGAGCGGAGAGTTCATCAGGCACGGCGTCGCAAAGCCGTTTGGT
GAGCTCTTGCGCCGTCCTCAAATTGGCTTTCGTGAGCGCTCTACTTGGAG
AGCGGTACGCCGCACCCGTGGCTGCCTTCTGTGCGACCACTTCGTCGCGT
GCGTTTGCTTCACGCAGTGGCGGTGGCGGGGGGGCGGCGGCGAGACGTTC
ATGTTTCGAATTGTTTGGGATCAAGAGGAAGGTCAAGGTTGATTTGCAGG
AAAACATGGGCAGAGCGGAGAGTTCATCAGGCACGGCGTCGCAAAGCCGT
TTGGTGAGCTCTTGCGCCGTCCTCAAATTGGCTTTCGTGAGCGCTCTACT
TGGAGAGCGGTACGCCGCACCCGTGGCTGCCTTCTGTGCGACCACTTCGT
CGCGTGCGTTTGCTTCACGCAGTGGCGGTGGCGGGGGGGCGGCGGCGAGA
CGTTCATGTTTCGAATTGTTTGGGATCAAGAGGAAGGTCAAGGTTGATTT
GCAGGAAAACTTTTCCGGCAAGGTCGTCGACACCTCCGGACCCATGTCGG
GAATGCTGGGGGGTGACGCTAATGGGTTGTTTGAGGTGATCGAAAGGAAC
AAAAAGAAGGACGTAGAGGCCGCCGCCGTTGCGGAAGCAGCGCGACACGC
TGCAGAAGAAGGCGCGAGCGACAAGAACCTGGAGCTCGAGGGTGCCGACG
GAGGTGACGATGATGAAGAGGGGCATGAAGAAGAGGACCTCGCCTGATTT
TCCGGCAAGGTCGTCGACACCTCCGGACCCATGTCGGGAATGCTGGGGGG
TGACGCTAATGGGTTGTTTGAGGTGATCGAAAGGAACAAAAAGAAGGACG
TAGAGGCCGCCGCCGTTGCGGAAGCAGCGCGACACGCTGCAGAAGAAGGC
GCGAGCGACAAGAACCTGGAGCTCGAGGGTGCCGACGGAGGTGACGATGA
TGAAGAGGGGCATGAAGAAGAGGACCTCGCCTGA
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