mRNA_H-elongata_contig116688.1309.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116688.1309.1
Unique NamemRNA_H-elongata_contig116688.1309.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig116688.1309.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 1.300e-51
Identity = 92/112 (82.14%), Postives = 105/112 (93.75%), Query Frame = 1 
Query:    1 IRSLVDGVFDSLCAHLEWGHERLGRLEKKMERDRLTNGSLTDEKEKNLEESRKAYEVLLGNVSSLAASLNRDMPQLPEEEEEEE-TGGISLWEGGIGGDRSGYTGPFEESER 333
            +RSLVDGVFD+LC+HLE GHE+LGRLEKKME+DRLTNG+LT+EKE+NLEESRK YE LLGNV+SLA+SLNRDMPQLPE E EEE +GGISLWEGG+GGD +GYTGPFEESER
Sbjct:  674 LRSLVDGVFDALCSHLERGHEQLGRLEKKMEKDRLTNGTLTEEKERNLEESRKGYEALLGNVTSLASSLNRDMPQLPEHEAEEEGSGGISLWEGGVGGDGTGYTGPFEESER 785
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BLAST of mRNA_H-elongata_contig116688.1309.1 vs. uniprot
Match: A0A835YRH9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH9_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.830e-21
Identity = 53/109 (48.62%), Postives = 74/109 (67.89%), Query Frame = 1 
Query:   10 LVDGVFDSLCAHLEWGHERLGRLEKKMERDRLTNGSLTDEKEKNLEESRKAYEVLLGNVSSLAASLNRDMPQLPEEEEEEETGGISLWEGGIGGDRSGYTGPFEESERR 336
            ++ GV   L  HL   H+ L +LE++ME+DRL  GSLT+EKE+NLE S  AY  LL NV +L+ +L+ DMP LPE++EEEE GG+ LW  G+G    G  GP+++ E +
Sbjct:  257 VLQGVLRRLRGHLVTAHKALQKLERRMEKDRLLCGSLTEEKERNLELSAGAYNKLLSNVVALSDALDEDMPDLPEDKEEEELGGVELWSSGVGLGE-GDLGPWDDLETK 364
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BLAST of mRNA_H-elongata_contig116688.1309.1 vs. uniprot
Match: A0A8J2S5M1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S5M1_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.580e-9
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:   58 HERLGRLEKKMERDRLTNGSLTDEKEKNLEESRKAYEVLLGNVSSLAASLNRDMPQL---PEEEEEEETGGISLWEGGIGGDRSGYTGPFEESERR 336
            HE L  LE+K  RD L +GSLT+EKEK LE++RKA E L+  VS+L  +L+ D P L    + EEE++ G +SLW    G  RS   G +++   R
Sbjct:  373 HEALRSLERKAARDALNHGSLTEEKEKALEDARKAREKLVKEVSALCDALDIDPPVLLDGDDSEEEDDKGELSLWTAERGS-RSESAGAYDDDAAR 467
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BLAST of mRNA_H-elongata_contig116688.1309.1 vs. uniprot
Match: A0A6V0BH58_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6V0BH58_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.100e-9
Identity = 41/109 (37.61%), Postives = 65/109 (59.63%), Query Frame = 1 
Query:   19 GVFDSLCAHLEWGHERLGRLEKKMERDRLTNGSLTDEKEKNLEESRKAYEVLLGNVSSLAASLNRDMPQLPEEEEEEETGG--ISLWEGGIGGDRSGYT-GPFEESERR 336
            G ++ L   L     +L ++EK+ E+DRL  GSLT+ +EK L+++RK  E L  +V +++  ++  +PQL +E EEE  GG  + +W    GGD  G   GPF++ E R
Sbjct:  486 GAYEFLSKSLVQTDTKLQKMEKRCEQDRLLAGSLTEAREKGLQDARKLRETLEKSVEAMSDIMDLPLPQLEKETEEETEGGTGVEVWTKD-GGDEDGTNFGPFDDEETR 593
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BLAST of mRNA_H-elongata_contig116688.1309.1 vs. uniprot
Match: A0A6V0BI57_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6V0BI57_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.140e-9
Identity = 41/109 (37.61%), Postives = 65/109 (59.63%), Query Frame = 1 
Query:   19 GVFDSLCAHLEWGHERLGRLEKKMERDRLTNGSLTDEKEKNLEESRKAYEVLLGNVSSLAASLNRDMPQLPEEEEEEETGG--ISLWEGGIGGDRSGYT-GPFEESERR 336
            G ++ L   L     +L ++EK+ E+DRL  GSLT+ +EK L+++RK  E L  +V +++  ++  +PQL +E EEE  GG  + +W    GGD  G   GPF++ E R
Sbjct:  486 GAYEFLSKSLVQTDTKLQKMEKRCEQDRLLAGSLTEAREKGLQDARKLRETLEKSVEAMSDIMDLPLPQLEKETEEETEGGTGVEVWTKD-GGDEDGTNFGPFDDEETR 593
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BLAST of mRNA_H-elongata_contig116688.1309.1 vs. uniprot
Match: UPI001E1E0EF2 (LOW QUALITY PROTEIN: regulator of nonsense transcripts 2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E0EF2)

HSP 1 Score: 62.0 bits (149), Expect = 7.440e-9
Identity = 30/90 (33.33%), Postives = 53/90 (58.89%), Query Frame = 1 
Query:    4 RSLVDGVFDSLCAHLEWGHERLGRLEKKMERDRLTNGSLTDEKEKNLEESRKAYEVLLGNVSSLAASLNRDMPQLPEEEEEEETGGISLW 273
            R+L+   ++SLC HL   H+ L  +EK+  +  LT G L+ E+++  EE   +Y+ L  N       ++ DMP LPE++ +E+ GG+ ++
Sbjct:  418 RNLLGEYYNSLCKHLMADHKNLKNMEKQNRKTLLTKGELSTERKEKYEEFYNSYQKLFSNTQVFTDLVDEDMPDLPEDDPQEDDGGLDIF 507
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BLAST of mRNA_H-elongata_contig116688.1309.1 vs. uniprot
Match: A0A7S1ZWS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZWS9_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 9.390e-9
Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:   19 GVFDSLCAHLEWGHERLGRLEKKMERDRLTNGSLTDEKEKNLEESRKAYEVLLGNVSSLAASLNRDMPQLPEEEEEEETGGISLWEGGIGGDRSG 303
            G + +L +     H +L +LEK+ E+D+L  GSL++ +EK L+++RK  E +  +V +LA SLN+D+P+L   EEEE  G       G GGD+ G
Sbjct:  312 GTYQTLSSTYLSTHTKLMKLEKRCEQDKLITGSLSEHREKGLQDARKLLETIQKSVETLAESLNQDVPKL---EEEEXXGN------GTGGDKDG 397
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BLAST of mRNA_H-elongata_contig116688.1309.1 vs. uniprot
Match: A0A7S4QUB8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QUB8_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 9.850e-9
Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:   19 GVFDSLCAHLEWGHERLGRLEKKMERDRLTNGSLTDEKEKNLEESRKAYEVLLGNVSSLAASLNRDMPQLPEEEEEEETGGISLWEGGIGGDRSG 303
            G + +L +     H +L +LEK+ E+D+L  GSL++ +EK L+++RK  E +  +V +LA SLN+D+P+L   EEEE  G       G GGD+ G
Sbjct:  361 GTYQTLSSTYLSTHTKLMKLEKRCEQDKLITGSLSEHREKGLQDARKLLETIQKSVETLAESLNQDVPKL---EEEEXXGN------GTGGDKDG 446
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BLAST of mRNA_H-elongata_contig116688.1309.1 vs. uniprot
Match: A0A448Z1B4_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z1B4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.020e-8
Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = 1 
Query:   19 GVFDSLCAHLEWGHERLGRLEKKMERDRLTNGSLTDEKEKNLEESRKAYEVLLGNVSSLAASLNRDMPQLPEEEEEEETGG--ISLWEGGIGGDRSGYT-GPFEESERR 336
            G +  L   L     +L ++EK+ E+DRL  GSLTD +EK L+++RK  E L  +V +++  ++  +PQL +E EEE  GG  + +W    GGD  G   GPF++ E R
Sbjct:  470 GAYAFLSRSLIETDTKLQKMEKRCEQDRLLAGSLTDAREKGLQDARKLRESLEKSVEAMSDIMDLPLPQLEKEAEEETEGGTGVEVWTKD-GGDEDGTDFGPFDDEETR 577
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BLAST of mRNA_H-elongata_contig116688.1309.1 vs. uniprot
Match: A0A6U5Q234_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5Q234_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.820e-8
Identity = 42/111 (37.84%), Postives = 64/111 (57.66%), Query Frame = 1 
Query:   19 GVFDSLCAHLEWGHERLGRLEKKMERDRLTNGSLTDEKEKNLEESRKAYEVLLGNVSSLAASLNRDMPQLPEEEEEEETG---GISLW--EGGIGGDRSGYTGPFEESERR 336
            G F +L   L   H +L +LEK+ E+DRL  GSLT+ ++K L+++RK ++ L  +V  +   L+   P L EE++EEE     G+ +W  EG  G D     GPF++ E R
Sbjct:  396 GAFGTLSKSLVETHGKLRKLEKRCEQDRLLAGSLTEARQKGLDDARKLFDNLQKSVEVIGDLLDLKPPVLNEEDDEEEEAKGSGLEVWTKEGEDGED----FGPFDDDETR 502
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116688.1309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LEF3_ECTSI1.300e-5182.14Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
A0A835YRH9_9STRA3.830e-2148.62Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A8J2S5M1_9STRA1.580e-944.79Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6V0BH58_9STRA2.100e-937.61Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A6V0BI57_9STRA2.140e-937.61Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
UPI001E1E0EF27.440e-933.33LOW QUALITY PROTEIN: regulator of nonsense transcr... [more]
A0A7S1ZWS9_9STRA9.390e-940.00Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S4QUB8_9STRA9.850e-940.00Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A448Z1B4_9STRA1.020e-838.53Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A6U5Q234_9STRA4.820e-837.84Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116688contigH-elongata_contig116688:1162..2009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.4
Seed ortholog evalue7.2e-45
Seed eggNOG ortholog2880.D8LEF3
Preferred nameUPF2
KEGG koko:K14327
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000956,GO:0001101,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005844,GO:0006139,GO:0006259,GO:0006310,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007274,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009628,GO:0009648,GO:0009719,GO:0009725,GO:0009751,GO:0009753,GO:0009755,GO:0009863,GO:0009867,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019899,GO:0023052,GO:0031503,GO:0031974,GO:0031981,GO:0032870,GO:0032991,GO:0033036,GO:0034427,GO:0034613,GO:0034641,GO:0034655,GO:0035145,GO:0035690,GO:0035770,GO:0036464,GO:0042162,GO:0042221,GO:0042493,GO:0042742,GO:0042886,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048519,GO:0048571,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070727,GO:0070887,GO:0071166,GO:0071229,GO:0071236,GO:0071310,GO:0071395,GO:0071407,GO:0071426,GO:0071427,GO:0071446,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090304,GO:0097159,GO:0098542,GO:0098916,GO:0099536,GO:0099537,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1901701,GO:1990904
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
EggNOG OGsKOG2051@1,KOG2051@2759
Ec32 ortholog descriptionMIF4-like, type 1/2/3
Ec32 orthologEc-00_002070.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Hectar predicted targeting categoryother localisation
Exons2
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929678.6258233-CDS-H-elongata_contig116688:1161..13731622929678.6258233-CDS-H-elongata_contig116688:1161..1373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116688 1162..1373 +
1691679116.4670894-CDS-H-elongata_contig116688:1161..13731691679116.4670894-CDS-H-elongata_contig116688:1161..1373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116688 1162..1373 +
1622929678.655685-CDS-H-elongata_contig116688:1885..20091622929678.655685-CDS-H-elongata_contig116688:1885..2009Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116688 1886..2009 +
1691679116.4834456-CDS-H-elongata_contig116688:1885..20091691679116.4834456-CDS-H-elongata_contig116688:1885..2009Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116688 1886..2009 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116688.1309.1prot_H-elongata_contig116688.1309.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116688 1162..2009 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116688.1309.1

>prot_H-elongata_contig116688.1309.1 ID=prot_H-elongata_contig116688.1309.1|Name=mRNA_H-elongata_contig116688.1309.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
IRSLVDGVFDSLCAHLEWGHERLGRLEKKMERDRLTNGSLTDEKEKNLEE
SRKAYEVLLGNVSSLAASLNRDMPQLPEEEEEEETGGISLWEGGIGGDRS
GYTGPFEESERR
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mRNA from alignment at H-elongata_contig116688:1162..2009+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116688.1309.1 ID=mRNA_H-elongata_contig116688.1309.1|Name=mRNA_H-elongata_contig116688.1309.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=848bp|location=Sequence derived from alignment at H-elongata_contig116688:1162..2009+ (Himanthalia elongata Himel1 dioecious)
ATCAGATCGCTCGTGGACGGGGTATTCGACTCCCTGTGCGCGCACCTGGA
GTGGGGACACGAGCGGCTCGGACGGCTGGAAAAGAAGATGGAGAGAGACA
GGCTGACAAACGGTTCGCTAACCGACGAGAAGGAGAAGAATTTGGAGGAG
AGCAGGAAGGCTTATGAGGTCCTCCTGGGGAATGTCTCATCCTTGGCCGC
TTCGTTGAATAGGTGAGGGGAGGTTTGCAAATGCAGAAGGCGGAAGGAGA
AGAGAGAGGGGGGCGGAGCGTGGTGAGTGAGGCCGCACCAGGGTTTACGT
TTATGAAGAGCATCATTTTTTATTCACAGCAGAGAGCGCGGTATAACGGC
TGGTCACGTGTTGAACTTTTTAGGGTCTTTCGAAGCTTTTTTTCGTAGAG
CCACGCCAGGGGTTGGCCCGATTCGGCTCTCTTGCTTACGAAGTACTCGT
TTTTTATTGTCTCTGGAAATTGAAGTCCTGGATAAGGGAAGCGTGACTGG
GTAGGGAAGAAAATGGAAGGTCCCCTGATCATTGCCCTTGAGAAGGAGCG
TGCGTTCGAAGCACAGTGGCCCGACTCGGTCTGAGAATATTGCGTCCAGT
TTTGGTGTTGGGAGACAGAAGCTGAAGAATGGACGCCAACCTCATCCCCT
ATCCACTATCCCCTTATCGTAACGCCTCCACCCCTTTTTGGTGGATGTTG
GTCTTGCCTTCGGTGGGTGAGAAGAGACATGCCGCAGCTTCCCGAGGAAG
AAGAGGAAGAGGAGACCGGAGGTATCAGCCTTTGGGAAGGGGGAATTGGG
GGCGACCGGTCCGGCTACACAGGACCGTTCGAAGAGTCCGAGAGGCGA
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Coding sequence (CDS) from alignment at H-elongata_contig116688:1162..2009+

>mRNA_H-elongata_contig116688.1309.1 ID=mRNA_H-elongata_contig116688.1309.1|Name=mRNA_H-elongata_contig116688.1309.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig116688:1162..2009+ (Himanthalia elongata Himel1 dioecious)
ATCAGATCGCTCGTGGACGGGGTATTCGACTCCCTGTGCGCGCACCTGGA
GTGGGGACACGAGCGGCTCGGACGGCTGGAAAAGAAGATGGAGAGAGACA
GGCTGACAAACGGTTCGCTAACCGACGAGAAGGAGAAGAATTTGGAGGAG
AGCAGGAAGGCTTATGAGGTCCTCCTGGGGAATGTCTCATCCTTGGCCGC
TTCGTTGAATAGATCAGATCGCTCGTGGACGGGGTATTCGACTCCCTGTG
CGCGCACCTGGAGTGGGGACACGAGCGGCTCGGACGGCTGGAAAAGAAGA
TGGAGAGAGACAGGCTGACAAACGGTTCGCTAACCGACGAGAAGGAGAAG
AATTTGGAGGAGAGCAGGAAGGCTTATGAGGTCCTCCTGGGGAATGTCTC
ATCCTTGGCCGCTTCGTTGAATAGAGACATGCCGCAGCTTCCCGAGGAAG
AAGAGGAAGAGGAGACCGGAGGTATCAGCCTTTGGGAAGGGGGAATTGGG
GGCGACCGGTCCGGCTACACAGGACCGTTCGAAGAGTCCGAGAGGCGAAG
ACATGCCGCAGCTTCCCGAGGAAGAAGAGGAAGAGGAGACCGGAGGTATC
AGCCTTTGGGAAGGGGGAATTGGGGGCGACCGGTCCGGCTACACAGGACC
GTTCGAAGAGTCCGAGAGGCGA
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