mRNA_H-elongata_contig56432.13089.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56432.13089.1
Unique NamemRNA_H-elongata_contig56432.13089.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56432.13089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56432contigH-elongata_contig56432:752..3482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size695
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56432.13089.1prot_H-elongata_contig56432.13089.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56432 925..3353 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930918.3637733-UTR-H-elongata_contig56432:751..9241622930918.3637733-UTR-H-elongata_contig56432:751..924Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56432 752..924 -
1691679624.3463304-UTR-H-elongata_contig56432:751..9241691679624.3463304-UTR-H-elongata_contig56432:751..924Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56432 752..924 -
1622930918.4450693-UTR-H-elongata_contig56432:3353..34821622930918.4450693-UTR-H-elongata_contig56432:3353..3482Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56432 3354..3482 -
1691679624.3909402-UTR-H-elongata_contig56432:3353..34821691679624.3909402-UTR-H-elongata_contig56432:3353..3482Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56432 3354..3482 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930918.3897657-CDS-H-elongata_contig56432:924..10251622930918.3897657-CDS-H-elongata_contig56432:924..1025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56432 925..1025 -
1691679624.354438-CDS-H-elongata_contig56432:924..10251691679624.354438-CDS-H-elongata_contig56432:924..1025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56432 925..1025 -
1622930918.4084332-CDS-H-elongata_contig56432:1060..11271622930918.4084332-CDS-H-elongata_contig56432:1060..1127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56432 1061..1127 -
1691679624.362646-CDS-H-elongata_contig56432:1060..11271691679624.362646-CDS-H-elongata_contig56432:1060..1127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56432 1061..1127 -
1622930918.4268126-CDS-H-elongata_contig56432:3128..33531622930918.4268126-CDS-H-elongata_contig56432:3128..3353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56432 3129..3353 -
1691679624.3776872-CDS-H-elongata_contig56432:3128..33531691679624.3776872-CDS-H-elongata_contig56432:3128..3353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56432 3129..3353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56432.13089.1

>prot_H-elongata_contig56432.13089.1 ID=prot_H-elongata_contig56432.13089.1|Name=mRNA_H-elongata_contig56432.13089.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
MVWKKRLYSISLALVTRAGYYPFHLATILIPQHAGGWTSLDLSVWDCSGF
EALPVPMVENVNVYVDSVDSIRCESTHLKTPMVIIESPLRSALRQARRSI
AGSPCPFVLSCKASDRRPAARASKGRRDCL*
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mRNA from alignment at H-elongata_contig56432:752..3482-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56432.13089.1 ID=mRNA_H-elongata_contig56432.13089.1|Name=mRNA_H-elongata_contig56432.13089.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2731bp|location=Sequence derived from alignment at H-elongata_contig56432:752..3482- (Himanthalia elongata Himel1 dioecious)
GACGGAACTGGGCACCATCTAGTGGGCATCAAAAGCCATGTTTCATAAAG
ACGACCGCAACAACAGGGCTTGAGATGCTCTGCGGAAGCGACATTTCTAG
TTACGGCGGTCATTTTAGATGTGACCGAGATGGTGTGGAAGAAGAGACTA
TATAGCATATCCTTGGCGCTGGTGACGAGGGCAGGTTATTACCCTTTTCA
CCTAGCGACTATTCTGATTCCTCAACACGCCGGGGGTTGGACATCTCTTG
ATCTCTCCGTATGGGATTGCTCTGGTTTCGAAGCGCTACCCGTTCCTATG
GTGGAGAATGTCAACGTTTACGTAGACAGCGTGGACAGCATACGATGTGA
ATCGGTGAGTTCTCGTTGAGAGTTGCAGATATGAAGGCTGATTATATAGC
TGGACCCACCATTAATGCAGTTAGCTTACAGAGCGGTACAGTAGGTCGTT
CTTGCTACTACTTTAGCTCTCTCCTCCAAGACCAGCTAATTTTATAGCGA
TATTATTTGATTCCTTTGAGAGGGACTCTCTCAGTTTGTTCTCGGCTAAC
TCTTTGATTGTTATGAGAGGGAGAATACAATTGCAGGAACAACTACCGCC
ATCCCCGACCTCTCCACATAAATAATCGAGATGGGTAACTTTATCGCTGC
ATGCATAAATTAGTGGCGCGCCGTCAATTCGCTACCGTCAGTACTCCTCA
ACCCTCCGCAAAGGGTCACATCTCAAAAGCCGACATTGCTCTCTCTCCTG
TCTCCGTTTGCCCTTTCGAATTGTTTGAATAAATCCCCTTGCTCTCTAAA
TCTCCTTTTCATTTTTTCGTATTGATAACTCAGCAGTACAGTATTCCGAT
TGGGTCTAACGTCGATATATTATTTTTAAACATCCTTCCGAATTGTGTTT
TTCTACCATGACACGGGCTGGATTTTGATATCAGTTTTTTATTTATTCAA
GACGTTGTGAGAATTGATTGTGAGAATGTGAATTCTCTACAGGTAGATGA
ACATAAATTATTTTCCTTTTCGTTTCTAATAGCTGTTTGCTACCTACGAG
GAGCTTACCTGCTCCTTAACCCTGGTATAAGCATGATCTCTTAGGCTCTC
TCAGGCTTTCCTAGGCTCTCTTAGCTCGCGTTTGTACACTCATTGGCTCC
TTCTCCCGTCATTTGGACAGTACCATTACTAATAAACTGATCTTGAACCA
ACCAGTTCTATGACAATGTTTCTGTAAAAAAGAAAAAAGAGAAGAAAAAG
AGAAGAAAAAATCTTCGTGGAGGATACAAACGGAGGGTAGCCATCGCGGG
CTCAGTAGGACTGAACAGACAGTCGGGTTTTTTATAGTGGCTATTCAAAC
TTATTCGAGCGCAACCAGCAAAATACGTTTCAGAAAACCACACGTCTCAG
CGGAGATAGCAGGCTAGAGCTAGAGCTAGATGCACATGAAGGAAGGGGTA
CGGGATGCAGCTTCACCACCGTCCCGCCATTTCGCTTTACACACACACAG
ACACACACACCTCAAGACCCCGATGGTGATAATCAAATCTCCTCTGCGGT
CAGCTATACGACAAGCACGACACCGGGTCTTACGACCAGTAACCGCCATC
AGATTAGGTCGATCGTGGGATCACCGTGTCCTTTTGTCCTCTCGTGCAAA
GCATCTGATAGGAGACCGGCTGCGAGAGCATTGAAAGGACGAAGAGACTG
TTTATAGTTATACCAGTTCTTTGATGGAGGATACAAACGGAGGGTAGCCA
TCGCGGGCTCCTCACGTACAAATAAGAAACTGATAGTAGGACTGAACAGA
GAGTCAGTATTTTTATTAGAAAAACCTTGAACTCATTCCAACCCTCCGAA
CATCCACACTCTTAGCGCCGTGAGAGGTGCCGTCCAGGGGACCAACTATC
GTCGGGTTCGAATGTGTACATTACTACCTTTGAGCACAAAATCGTCACAC
TATAGGTCATTAAAGCACATGGTTGTATGATGTATATATATATATCCGTT
GGTTTCAGACTATATTACAGCTCGTAAGAATTTATCTTCCGTAATAATGA
GTATATATTGATTGAATTGATTTGATTGAATCCTCACATAAGCTCTTCTA
TATATGTAATGGTTTCAGACTGTATTATAGCTGAGTGAGGTGTCATCCAG
GGGACCAACTATCGTCGGGTACGAATGTGGGCATTGCTACCGTAACAGTG
GCTATTCAAACTTATTCGAGCGCAACCATCAACATACGTTTCAGAAAACC
ACACGTCTCAGCTGAGATCGCAGGCTAGAGCTAGATGCACATGAAGGAAG
GGGTACGGGATGCAGCTTCACCACCGTCCCGCCATTTCGCTTTACACACA
CACAGACACACCTCAAGACCCCGATGGTGATAATCGAATCTCCTCTGCGG
TCAGCTTTACGACAAGCACGACACCGGGTCTTACGACCAGTAACCGTCAT
CAGATTGGGTCGATCGCGGGATCACCGTGTCCTTTTGTCCTCTCGTGCAA
AGCATCTGACAGGAGACCGGCTGCGAGAGCATCGAAAGGACGAAGAGACT
GTTTATAGTTATACTAGTACTATGCGTGGAAGCGAACATGCGAATGCACG
CCCAGCGACCACCCCGGTGGATCATCTTTTGGGCAGACAGGAGGCAGACA
GCATTTTAGGAGGCAGCACTTTGTAGTCCAAGACTCGAGGAGGAAGGAGC
AAGATGGGGAGGGATAGGAGAAAGAGACGGC
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Coding sequence (CDS) from alignment at H-elongata_contig56432:752..3482-

>mRNA_H-elongata_contig56432.13089.1 ID=mRNA_H-elongata_contig56432.13089.1|Name=mRNA_H-elongata_contig56432.13089.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig56432:752..3482- (Himanthalia elongata Himel1 dioecious)
ATGGTGTGGAAGAAGAGACTATATAGCATATCCTTGGCGCTGGTGACGAG
GGCAGGTTATTACCCTTTTCACCTAGCGACTATTCTGATTCCTCAACACG
CCGGGGGTTGGACATCTCTTGATCTCTCCGTATGGGATTGCTCTGGTTTC
GAAGCGCTACCCGTTCCTATGGTGGAGAATGTCAACGTTTACGTAGACAG
CGTGGACAGCATACGATGTGAATCGATGGTGTGGAAGAAGAGACTATATA
GCATATCCTTGGCGCTGGTGACGAGGGCAGGTTATTACCCTTTTCACCTA
GCGACTATTCTGATTCCTCAACACGCCGGGGGTTGGACATCTCTTGATCT
CTCCGTATGGGATTGCTCTGGTTTCGAAGCGCTACCCGTTCCTATGGTGG
AGAATGTCAACGTTTACGTAGACAGCGTGGACAGCATACGATGTGAATCG
ACACACCTCAAGACCCCGATGGTGATAATCGAATCTCCTCTGCGGTCAGC
TTTACGACAAGCACGACACACACCTCAAGACCCCGATGGTGATAATCGAA
TCTCCTCTGCGGTCAGCTTTACGACAAGCACGACGGTCGATCGCGGGATC
ACCGTGTCCTTTTGTCCTCTCGTGCAAAGCATCTGACAGGAGACCGGCTG
CGAGAGCATCGAAAGGACGAAGAGACTGTTTATAGGGTCGATCGCGGGAT
CACCGTGTCCTTTTGTCCTCTCGTGCAAAGCATCTGACAGGAGACCGGCT
GCGAGAGCATCGAAAGGACGAAGAGACTGTTTATAG
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