mRNA_H-elongata_contig5636.13084.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5636.13084.1
Unique NamemRNA_H-elongata_contig5636.13084.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig5636.13084.1 vs. uniprot
Match: V5K3Y9_SACJA (Trehalose-6-phosohate synthase n=1 Tax=Saccharina japonica TaxID=88149 RepID=V5K3Y9_SACJA)

HSP 1 Score: 486 bits (1250), Expect = 3.520e-159
Identity = 238/311 (76.53%), Postives = 269/311 (86.50%), Query Frame = 1 
Query:   19 PTPAFEISFGVEAGLGQGEIIYVCGSCPSLGSKDPSRALRLVTDPVSYPVWSSDPVSVPLGNKVTYRYCVVSGGKFKRWENISNDRELDPVTEPSKALVMVEDILDEYKGKGGGGGFLSGFGLFRGSSGLPQGDMSRSIKYTAANRSSRQASKIAIRAKTVAKEQSSAITTRDGVVVVSFFLPVLVTKGADGKWIVEWDYENLLSLHSAGIDMRVTRVGFVRHLDGISPKEEEEVAKALVPFSCVPVFLDTPLATKFYRDFCKGILWPVFHHVVDVYGDLVMRFFNQDTLKDLWQCYVIVNRRFRDRVVEV 951
            P PA+E+SFGVEA LG GE+IYVCGSCPSLGSKDPSRALRLVTDP SYPVWSS+PV VPLG KVTYRYC+V+GGK KRWE+I+ DRELDPV E   A VM ED+LD+YKG GG G F    G+FRGSSG+PQGD+ RSIK+TAANR+S QAS +A+RAKTVAKE+SSAITTRDGVVVVSFFLPV++ K  DG W+VEWDYE+LLSLHSA IDMRVTRVGF+R+ DG+ P+EEE VAKAL+PFSCVPVFL+  LA KFYRDFCKG+LWPVFHHVVDVYGD VMRFF QD L DLWQ Y  VNRRFRD++VEV
Sbjct:    4 PPPAYELSFGVEAKLGHGEVIYVCGSCPSLGSKDPSRALRLVTDPSSYPVWSSEPVPVPLGQKVTYRYCIVAGGKLKRWEDIAVDRELDPVKEADAAPVMAEDVLDKYKGSGGVGFFA---GIFRGSSGVPQGDILRSIKFTAANRTSLQASMMALRAKTVAKEKSSAITTRDGVVVVSFFLPVIIDKDIDGNWVVEWDYESLLSLHSASIDMRVTRVGFLRYADGVKPEEEEAVAKALLPFSCVPVFLERSLAQKFYRDFCKGVLWPVFHHVVDVYGDQVMRFFAQDVLADLWQAYANVNRRFRDKIVEV 311
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BLAST of mRNA_H-elongata_contig5636.13084.1 vs. uniprot
Match: D7FL73_ECTSI (Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL73_ECTSI)

HSP 1 Score: 380 bits (977), Expect = 1.580e-119
Identity = 201/314 (64.01%), Postives = 228/314 (72.61%), Query Frame = 1 
Query:   10 PSPPTPAFEISFGVEAGLGQGEIIYVCGSCPSLGSKDPSRALRLVTDPVSYPVWSSDPVSVPLGNKVTYRYCVVSGGKFKRWENISNDRELDPVTEPSKALVMVEDILDEYKGKGGGGGFLSGFGLFRGSSGLPQGDMSRSIKYTAANRSSRQASKIAIRAKTVAKEQSSAITTRDGVVVVSFFLPVLVTKGADGKWIVEWDYENLLSLHSAGIDMRVTRVGFVRHLDGISPKEEEEVAKALVPFSCVPVFLDTPLATKFYRDFCKGILWPVFHHVVDVYGDLVMRFFNQDTLKDLWQCYVIVNRRFRDRVVEV 951
            P+ P PA+E+SF VEA LG GE+IYVCGSCPSLG+KDPSRALRLVTDP SYPVWSS PV VPL  KVTYRYCVV+GGK KRWE+IS DRELDPVTEPS A  +VED+LD+YKGKGGGG FL GF  FRGS  +P+GDM RS+K+ AANR+S QAS +A+RAKT AKE+SSAIT RDGVVVVSFFLPVL++K   G+W+VEWDYE+LLSLHS  +DMR                                                 GILWPVFHHVVDVYGD VMRFF QDT+ DLWQCY  VNRRFRD++VEV
Sbjct:   11 PTRPPPAYELSFAVEAKLGHGEVIYVCGSCPSLGAKDPSRALRLVTDPSSYPVWSSGPVPVPLNKKVTYRYCVVAGGKLKRWEDISVDRELDPVTEPSAATAIVEDVLDKYKGKGGGG-FLGGF--FRGSR-VPKGDMRRSVKFAAANRTSLQASMMALRAKTAAKEKSSAITKRDGVVVVSFFLPVLLSKDEGGRWVVEWDYESLLSLHSTDVDMR-------------------------------------------------GILWPVFHHVVDVYGDQVMRFFTQDTMADLWQCYANVNRRFRDKIVEV 271
[Close]
BLAST of mRNA_H-elongata_contig5636.13084.1 vs. uniprot
Match: A0A835YZM5_9STRA (Glycosyltransferase family 20-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZM5_9STRA)

HSP 1 Score: 223 bits (569), Expect = 3.750e-62
Identity = 166/453 (36.64%), Postives = 204/453 (45.03%), Query Frame = 1 
Query:   25 PAFEISFGVEAGLGQGEIIYVCGSCPSLGSKDPSRALRLVTDPVSYPVWSSDPVSVPLGNKVTYRYCVVSGGKFKRWENISNDRELDPVT---------------------------------------------EPS---------KALVMVEDILD---------EYKGKGGGGGFLSGFGLFRGSSGLPQGDMSRSIKYTAANRSSRQASKIAIRAKTVAKEQSSA----------------ITTRDGVVV------------VSFFLPVLVTKGADGKWIVEWDYENLLSLHSAGIDMRVTRVGF----------------------VRHLDGISPKEEEEVAKALVPFSCVPVFLDTPLATKFYRDFCK-------------------------------GILWPVFHHVVDVYGDLVMRFFNQDTLKDLWQCYVIVNRRFRDRVVEV 951
            P +E+ F V A LG GE+ +V G+CPSLG+ D   A+ L T P +YP+W S P+++PL   V Y+Y V SGG+FKRWE +  DR LD VT                                             EP          +AL   E  LD           +  GGG    S    F   +G P    S      A  RSS  A  +    +  A  +                   I++ DGVV             VSFFLPV+V +   G W VEWD ENLLSLHS+ + +RVTRVG                       VR +  ++  +EE +AKALVPF CVPVFL+  L+ KFYRDFCK                               GILWPVFHHVVDVYGDLVM+FF Q  LKDLWQCY  VNRRFRD++VEV
Sbjct:    2 PFYEVEFEVTAELGHGEVPFVAGTCPSLGNMDYKSAVLLTTTPDTYPIWRSPPLALPLHQIVLYKYGVFSGGEFKRWEEVIEDRVLDVVTTATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGDMLDVEPEGAELPSTLDRALQDAERELDGLAPLRGSEALRAAGGGSRRASIAVPFAVDAGAPLAAPS-----LARRRSSMPAPTVVSPRRVSAAAEPXXXXXXXXXXXXXXXXXPISSYDGVVXXXXXXXXXXXXXVSFFLPVIVKRLEQGGWSVEWDCENLLSLHSSTMPLRVTRVGIDYXXXXXXXXXXXXXXXXXXXIVRGVGALAGDDEETLAKALVPFDCVPVFLERSLSRKFYRDFCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGILWPVFHHVVDVYGDLVMKFFTQ--LKDLWQCYTTVNRRFRDKIVEV 447
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BLAST of mRNA_H-elongata_contig5636.13084.1 vs. uniprot
Match: A0A7S2BW05_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BW05_9STRA)

HSP 1 Score: 156 bits (395), Expect = 5.460e-39
Identity = 110/313 (35.14%), Postives = 163/313 (52.08%), Query Frame = 1 
Query:   43 FGVEAGLGQGEIIYVCGSCPSLGSKDPSRALRLVTDPVSYPVWSSDPVSVPLGNKVTYRYCVVSGGKFKRWENISNDRELDPVTEPSKALVMVEDILDEYKGKGGGGGFLSGFGLFRGSSGLPQGDMSRSIKYTAANRSSRQASKIAIRAKTVAKEQSSAITTRDGVVVVSFFLPVLVTKGAD-GKWIVEWDYENLLSLHSAGIDMRVTRVGFVRHLDGISPKE-------EEEVAKALVP-FSCVPVFLDTPLATKFYRDFCKGILWPVFHHVVDVYG--DLVMRFFNQDTLKDLWQCYVIVNRRFRDRVVE 948
            F V A L  GE IYV G+   LG+      + L T    YP+W SD V++P G ++ Y+Y V   GKFKRWE+IS +R++       +      D+LD+  G+G      SG  +                   +A  SS   +K  + A+ +   +S+ I T DGV+VVS++LPVLV   A  G   VEWD E LLS ++ G+  RVTR+G VR   G+   +       +EE+ + L   F CVP+FLD   +   Y+ FCKG+LWPVFH++++V    +  ++F N+    + W  Y  V R F+  ++E
Sbjct:   27 FRVRAKLDHGEQIYVSGTTDLLGNFSTEHCVPLYTSADRYPIWKSDCVALPHGCELQYKYAVFEAGKFKRWESISCNRQV-----LGEYAETTNDVLDDDTGQGEIDKKGSGVSIC-----------------ASATSSSPSLTKSLLGAREMNASKSTPIGTTDGVIVVSYYLPVLVDYDASTGVLNVEWDNEALLSYNAHGL--RVTRIGSVRFNGGVPKVDKVKMDQIQEELTQTLEEKFHCVPIFLDEKTSHTCYQVFCKGVLWPVFHNLLEVMSTENAAVQFSNKSG-DEGWLAYTTVQRVFKKAIIE 314
[Close]
BLAST of mRNA_H-elongata_contig5636.13084.1 vs. uniprot
Match: A0A7S3XSU4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSU4_HETAK)

HSP 1 Score: 147 bits (372), Expect = 1.920e-37
Identity = 76/149 (51.01%), Postives = 101/149 (67.79%), Query Frame = 1 
Query:  517 SAITTRDGVVVVSFFLPVLVTKGADGK-WIVEWDYENLLSLHSAGIDMRVTRVGFVRHLDG---ISPKEEEEVAKALVPFSCVPVFLDTPLATKFYRDFCKGILWPVFHHVVDVYGDLVMRFFNQDTLKDLWQCYVIVNRRFRDRVVEV 951
            + ++ +DGVVV S FLPV + +G  G+ W V WD++N+LSL S   D+RV RVG      G   +S  E+EE+  AL PF CVPV+L+  LA KFY  FCKG+LWPVFH+++DVYGD  + F++   L  LW  Y  VNR+FRDR+VEV
Sbjct:   13 ATLSAQDGVVVASCFLPVEIERGPGGRGWAVRWDHDNVLSLRS---DVRVARVGTPPLPAGCGDLSDAEKEELELALQPFDCVPVWLEADLAEKFYSGFCKGVLWPVFHNMLDVYGDAAVDFWDAQHLDGLWFAYTQVNRKFRDRIVEV 158
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BLAST of mRNA_H-elongata_contig5636.13084.1 vs. uniprot
Match: K8YR86_NANGC (Alpha,alpha-trehalose-phosphate synthase (UDP-forming) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YR86_NANGC)

HSP 1 Score: 131 bits (329), Expect = 3.160e-30
Identity = 78/187 (41.71%), Postives = 103/187 (55.08%), Query Frame = 1 
Query:  520 AITTRDGVVVVSFFLPVLVTK----------------------GADG-----------------KWIVEWDYENLLSLHSAGIDMRVTRVGFVR---HLDG-ISPKEEEEVAKALVPFSCVPVFLDTPLATKFYRDFCKGILWPVFHHVVDVYGDLVMRFFNQDTLKDLWQCYVIVNRRFRDRVVEV 951
            +I+  DGVVVVS+FLP++V++                      G  G                  WI+ WD ENLLSL +    +RVT VG VR    + G ++ +E+E +A+AL  F CVPVF+D  +  KFY  FCKG LWPVFHH++DVYG    RF++Q T   +W  Y  VN RFRD+VVEV
Sbjct:  275 SISPSDGVVVVSYFLPLIVSRAPSLPEGETETASRIKKRSGDAGLPGVRVDEGGEEXXXXEGARDWIIAWDTENLLSLRTR---LRVTWVGTVRLPAEIGGKLNREEQESLARALRKFDCVPVFIDPEIHDKFYNTFCKGTLWPVFHHILDVYGSRPTRFWDQKTQDSVWHSYSHVNMRFRDKVVEV 458
[Close]
BLAST of mRNA_H-elongata_contig5636.13084.1 vs. uniprot
Match: A0A482SVY9_9ARCH (CBM20 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SVY9_9ARCH)

HSP 1 Score: 125 bits (315), Expect = 4.280e-30
Identity = 105/309 (33.98%), Postives = 143/309 (46.28%), Query Frame = 1 
Query:   79 IYVCGSCPSLGSKDPSRALRLVTDPVSYPVWSSDP--------------VSVPLG--------------NKVTYRYCVVSGGKFKRWENISNDRELDPVTEPSKALVM-VEDILDE--YKGKGGGGGFLSGFGLFRGSSGLPQGDMSRSIKYTAANRSSRQASKIAIRAKTVAKEQSSAITTRDGVVVVSFFLPVLVTKGADGKWIVEWDYENLLSLHSAGIDMRVTRVGFVRHLDGISPKEEEE-VAKALVPFSCVPVFLDTPLATKFYRDFCKGILWPVFHHVVDVYGDLVMRFFNQDTLKDLWQCY 909
            +YV G+ PSLGS D +RA+ LVT   +YP W++                +S P                + V YRYC+ SGGKF RWE  SN    D +    KA     ED L +  Y+     G  +      +  S  P  D  R+  +++ N  S                    + T D VVVVS+FLPV++TK A G W   WD E LLSL+++    ++  VG VR+ +   P EEEE V+  L   +C PVF++  +   FY  +CK  LW V HHV DVYG L M        ++LW  Y
Sbjct:    1 MYVSGNVPSLGSGDLNRAIPLVTTSQNYPWWTTKEGLCCSFLAIYCVFHLSFPFNLFSHFLSLGIYLPSSDVKYRYCIFSGGKFSRWET-SNGTYRDLLVGSGKAFSRSTEDKLGDPTYRYAVTDGTLMK----LQQISNTPS-DPQRARVFSSYNPES---------------YSKDDVGTEDSVVVVSYFLPVILTK-AQGVWQATWDKEALLSLNTSA---KMLWVGSVRYQNAPIPIEEEEAVSSVLAVMNCFPVFINQSMHYLFYDLYCKQNLWLVMHHVADVYGPLNMNDIGAKGQQNLWFNY 284
[Close]
BLAST of mRNA_H-elongata_contig5636.13084.1 vs. uniprot
Match: A0A7S1UMF2_9STRA (Hypothetical protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UMF2_9STRA)

HSP 1 Score: 115 bits (289), Expect = 5.770e-25
Identity = 70/189 (37.04%), Postives = 101/189 (53.44%), Query Frame = 1 
Query:  508 EQSSAITTRDGVVVVSFFLPVLVTKGADGKWIVEWDYENLLSLHSAGIDMRVTRVGFVRHL------------DGISPKEEEEVAKA-LVPFSCVPVFLDTPLATKFYRDFCKGILWPVFHHVVDVYGD--------------LVMRFFNQDTLKD---------------LWQCYVIVNRRFRDRVVE 948
            +Q   + + DG+VVVS FLPV++T+  DG+W  +WDYE LLS+ +    +RVTRVG V+              +G  P EE ++ +A LVPF+CVPV+++  L  + Y  FCKG+LWPV H+V  VY D              +  + F++ ++ D               LW  Y  VNRRF D VV+
Sbjct:  220 KQPVHLNSTDGLVVVSAFLPVVLTRSDDGQWSADWDYEMLLSMQT---HLRVTRVGIVKWRGWHGNQGAGGSPEGGVPLEERDLVEACLVPFNCVPVWVEPKLFGEMYNGFCKGVLWPVLHNVTSVYADDEEVMESKGGTPNAMSDQQFSEYSMDDVEQGPIHGDGGKEAELWSSYTAVNRRFADTVVQ 405
[Close]
BLAST of mRNA_H-elongata_contig5636.13084.1 vs. uniprot
Match: A0A1Z5JS81_FISSO (Trehalose 6-phosphate synthase/phosphatase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JS81_FISSO)

HSP 1 Score: 115 bits (289), Expect = 5.780e-25
Identity = 70/188 (37.23%), Postives = 99/188 (52.66%), Query Frame = 1 
Query:  502 AKEQSSAITTRDGVVVVSFFLPVLVTKGADGKWIVEWDYENLLSLHSAGIDMRVTRVGFVR---------HLDGISPKEEEEVAKALVPFSCVPVFLDTPLATKFYRDFCKGILWPVFHHVVDVY--------GDLVMRF-------FNQDTLKD---------------LWQCYVIVNRRFRDRVVE 948
            A +Q+  + + DG+VVVS FLPV++ +  DGKW  EWDYE LLS+ +    +RVTRVG V+            G+   E   V + L+PF+CVPV++D  L  + Y  FCKG+LWPV H+V  VY        GD   +        F++ +L D               LW  Y  VNR+F ++VV+
Sbjct:  235 APKQAVHLNSTDGLVVVSAFLPVILNRSDDGKWSAEWDYEMLLSMQT---HLRVTRVGVVKWRGWHGNTQEKAGVPRNERRLVEECLLPFNCVPVWVDPILFGEMYNGFCKGVLWPVLHNVTSVYSNGPEDDNGDGASKISEVDGNEFSEYSLDDVEQGPIHGGRGREAELWAAYTAVNRQFAEKVVQ 419
[Close]
BLAST of mRNA_H-elongata_contig5636.13084.1 vs. uniprot
Match: A0A7S2UVC1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVC1_9STRA)

HSP 1 Score: 113 bits (283), Expect = 3.220e-24
Identity = 47/85 (55.29%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:  697 ISPKEEEEVAKALVPFSCVPVFLDTPLATKFYRDFCKGILWPVFHHVVDVYGDLVMRFFNQDTLKDLWQCYVIVNRRFRDRVVEV 951
            ++  ++ ++ +AL  F CVPV+LD  LATKFY++FCKG+LWP+FH+VVD+YGDL   F++ DTL   WQ Y++VNR+FRD++VEV
Sbjct:    8 LTEDDKLQLEQALAVFDCVPVWLDEALATKFYQEFCKGVLWPIFHNVVDIYGDLSTHFWDSDTLGTAWQAYMMVNRQFRDKIVEV 92
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5636.13084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
V5K3Y9_SACJA3.520e-15976.53Trehalose-6-phosohate synthase n=1 Tax=Saccharina ... [more]
D7FL73_ECTSI1.580e-11964.01Trehalose 6-phosphate synthase, family GT20 / Treh... [more]
A0A835YZM5_9STRA3.750e-6236.64Glycosyltransferase family 20-domain-containing pr... [more]
A0A7S2BW05_9STRA5.460e-3935.14Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3XSU4_HETAK1.920e-3751.01Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
K8YR86_NANGC3.160e-3041.71Alpha,alpha-trehalose-phosphate synthase (UDP-form... [more]
A0A482SVY9_9ARCH4.280e-3033.98CBM20 domain-containing protein n=1 Tax=archaeon T... [more]
A0A7S1UMF2_9STRA5.770e-2537.04Hypothetical protein n=2 Tax=Grammatophora oceanic... [more]
A0A1Z5JS81_FISSO5.780e-2537.23Trehalose 6-phosphate synthase/phosphatase n=2 Tax... [more]
A0A7S2UVC1_9STRA3.220e-2455.29Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5636contigH-elongata_contig5636:610..6256 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.7
Seed ortholog evalue4.7e-33
Seed eggNOG ortholog65071.PYU1_T001225
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K16055
KEGG ReactionR02737,R02778
KEGG Pathwayko00500,ko01100,map00500,map01100
EggNOG free text desc.Trehalose-phosphatase. Source PGD
EggNOG OGs1MB8I@121069,COG1877@1,KOG1050@2759
EC2.4.1.15,3.1.3.12
COG Functional cat.G
CAZyGT20
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons6
Model size951
Cds size951
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5636.13084.1prot_H-elongata_contig5636.13084.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5636 610..6256 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930917.7172759-CDS-H-elongata_contig5636:609..7531622930917.7172759-CDS-H-elongata_contig5636:609..753Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5636 610..753 -
1691679624.0899873-CDS-H-elongata_contig5636:609..7531691679624.0899873-CDS-H-elongata_contig5636:609..753Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5636 610..753 -
1622930917.7342584-CDS-H-elongata_contig5636:1745..19701622930917.7342584-CDS-H-elongata_contig5636:1745..1970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5636 1746..1970 -
1691679624.1001282-CDS-H-elongata_contig5636:1745..19701691679624.1001282-CDS-H-elongata_contig5636:1745..1970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5636 1746..1970 -
1622930917.751303-CDS-H-elongata_contig5636:2253..23471622930917.751303-CDS-H-elongata_contig5636:2253..2347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5636 2254..2347 -
1691679624.1118145-CDS-H-elongata_contig5636:2253..23471691679624.1118145-CDS-H-elongata_contig5636:2253..2347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5636 2254..2347 -
1622930917.7691548-CDS-H-elongata_contig5636:3174..33231622930917.7691548-CDS-H-elongata_contig5636:3174..3323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5636 3175..3323 -
1691679624.1251473-CDS-H-elongata_contig5636:3174..33231691679624.1251473-CDS-H-elongata_contig5636:3174..3323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5636 3175..3323 -
1622930917.7860174-CDS-H-elongata_contig5636:3802..38661622930917.7860174-CDS-H-elongata_contig5636:3802..3866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5636 3803..3866 -
1691679624.1343675-CDS-H-elongata_contig5636:3802..38661691679624.1343675-CDS-H-elongata_contig5636:3802..3866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5636 3803..3866 -
1622930917.8066182-CDS-H-elongata_contig5636:5981..62561622930917.8066182-CDS-H-elongata_contig5636:5981..6256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5636 5982..6256 -
1691679624.142762-CDS-H-elongata_contig5636:5981..62561691679624.142762-CDS-H-elongata_contig5636:5981..6256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5636 5982..6256 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5636.13084.1

>prot_H-elongata_contig5636.13084.1 ID=prot_H-elongata_contig5636.13084.1|Name=mRNA_H-elongata_contig5636.13084.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=317bp
MERPSPPTPAFEISFGVEAGLGQGEIIYVCGSCPSLGSKDPSRALRLVTD
PVSYPVWSSDPVSVPLGNKVTYRYCVVSGGKFKRWENISNDRELDPVTEP
SKALVMVEDILDEYKGKGGGGGFLSGFGLFRGSSGLPQGDMSRSIKYTAA
NRSSRQASKIAIRAKTVAKEQSSAITTRDGVVVVSFFLPVLVTKGADGKW
IVEWDYENLLSLHSAGIDMRVTRVGFVRHLDGISPKEEEEVAKALVPFSC
VPVFLDTPLATKFYRDFCKGILWPVFHHVVDVYGDLVMRFFNQDTLKDLW
QCYVIVNRRFRDRVVEV
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mRNA from alignment at H-elongata_contig5636:610..6256-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5636.13084.1 ID=mRNA_H-elongata_contig5636.13084.1|Name=mRNA_H-elongata_contig5636.13084.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5647bp|location=Sequence derived from alignment at H-elongata_contig5636:610..6256- (Himanthalia elongata Himel1 dioecious)
ATGGAACGGCCTTCACCACCGACTCCGGCATTCGAGATCTCCTTCGGCGT
GGAAGCCGGGTTGGGTCAGGGGGAGATAATATATGTCTGTGGCTCCTGCC
CCTCGCTGGGGTCGAAAGATCCTTCGAGAGCGCTGAGGCTCGTGACCGAC
CCCGTGAGCTACCCGGTGTGGAGCTCTGACCCTGTGTCGGTGCCCCTCGG
GAATAAGGTGACGTATCGATACTGCGTGGTGTCAGGGGGCAAGTTCAAGA
GATGGGAAAATATTTCGAACGACAGGTGAACCACCGTGTCTGTGTTGGTG
TTGTCTTCCTCTGTCTGTTCATCGTGTTGGCGCTTTCCAAGTGACACGGT
AACGGTAATGGTAACGGTAACCCCCTCGTATCGGTACAACATAAAATATT
TTCTGTGTGGTCGTTGTGGTGGTCGTGGTGGTCGTTGTGGTCGTTGTCGT
TGTCCACCTTAATCACCTTAATCACCTTAATCCTGTGTCCATCCCTTGAT
GACGGGCAGCACTGTCCGTGGCTTTATCTTTATCTCACGTTTCCACTATA
CAGTACCTGTATACAGTACCGTACCAATATTGTATTGTCCACTGTACCAT
CAGACTAGTTAGTGTCTGCGGGAAAAGGAAAAGGAGGCGCTCAATAATTG
GTCCATGGGGTTACCGAAATAGGCTGCACCCGTTACTCAAGCTACCTTGA
GGACTGCTGACTCAGTGCTGGCGGACTCTTGGTAGTAAACGCCATTGGTA
CACAATTGCGTGACCTGATGAAATCGGGATTAGCCCGTCGCGGAAAATGA
GAGGATCGAGAGGATCCCGGGAGTACGCACCGTATTCAGCCCGGGTTGAG
AGAATAAGCAGTCTTTTTCCCTGTTCAGCTGACCACAAGCAGGAGGCAAC
CATATCCGGATGATGCTCACGATGTTCTACTGTATACTGTACCTTATGTG
ATTATGACGACACATGGTGTAATATTGTAATAGTGAAAGAGTATAATAGT
GTAATATTATTGTAGAATAGTAGGAGGGTGGAGGGAGGGACTTCAATGTC
CAAGTTATCAATGTTATAGTGTGTTATACTGTGTTATACTGGGCAGTTTG
ATGTTTGCTCCGTCATCCCCGCTGTTTCTCGGAGAATACTCGAAAGCGTA
AAGCGTCTCATCGGTGGATGATGGATAGATCCATCCACCCGCTTGATGTT
CTAGTTCTAGAAGATTAGGCTTGATAAAAAGTGTCTCTGAGAGCGGCCAG
CGTCCTCGCGTGTCCCTGTCGTAAAGCTATGTTATTGAAAAGCTAGTCAC
TGCATTATACAGTCCAGTTCACAGTGCAGTACAGTACAGTTGCATAGTCT
TAAGTTAGATATTAGGCCAGCTTAGGTTAGATATTACGTGAGGTGAGGTG
AGGTGAAGTGCGTCCGTTGGTTCTTGGGGTGATATTGTAATAGTGTACGG
TATTGAAAACAATATACTAATAACTATTAACTATTAACCGATAGGGTTTG
CGCTTTTTGCGGTTAGGTTTTTATTTTGTTGTATTTAGTATTGTATTGTA
TTTAGTATTGTATTTATCGCAAGAGACAGTGAAAGGGCTAGCGTTGCAGA
AGAGCTGTCGAAAGGATGTTTCACAAATATAAATAACACGCAAAACGCCT
TTTTGGGAAATACTGCGCGAGGGAGATGAAACTGGCGGTGGGTATGGTTC
CATGAGTAGGGCGGCGGACACGTCCAATTTGACAGAGCTGAAACAGGAAT
TGAAACGCCATCGCAGACTTCTGTTTCATCCATTTATTTAGCCGTACCAC
CCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCACACAACAAAAACA
ANNNNNNNNNNAGAAAAAAAAGAAATTAAACCCCACCCCCACTTTTTTTT
TTCTTTCTTTTTTTTTCCCTCCCCCCCCCCCCCCCCCCCCCTCCCGAGAG
ACTCCTACAATAAGGCCAAGTTACTTGGTTTGACTGAACGAGTGAAATAT
TGAGTGAACGAGTACGCAATAAAAGAGAATGGTGGTATCGCTTCTGTTCA
AGCTGCTGCTCCACGCTTGGGTACCAGTTGCTTGGTGTGTGTTGGGTCCT
GGCACCAGCATGGTTGATGCGTCACTGATGGCTGAATGACTCGAACTTCC
TGTCATTCGATTTAAAAAAAAAGTAATCCCGTGCAGTACGGCAGTACAGC
AGTGTGGGGCGGTAGGTGTATATCGCGTGGTTTTATTAAATGGCTTTCGA
GATCTCCATCGGTTGCCCCTGCTCTCTCTCTCTCATATTCTATCGTATTC
TATCATATTCTATCATATCCTATCATATCCTATCGTATTCTATCATATTC
TTGGCCGTTGATAATTGTGGTGCACTCTTTGTCTTGCCAGAGAGTTGGAT
CCGGTCACCGAACCGTCCAAGGCCCTCGTCATGGTGGAGGACATTTTGGA
CGAGGTATGGAGGCGTTTAACCTTGGCGAGCGCGTTCTACCTAGAAGCTG
GTGCACGATTTTCACGGACAGGTTCCCTTACCAATGTCGTCTTGCCACGG
TTGGGTGTGTTGGAAGATTTTCATCCGGGGATCAAAGCGTTTCGATGAAC
CACCCGGTCGACGCCAATCTGTCCTCCAGCAAATGGTCAGGGCTTGGTGT
GATCCACCATCTGTGGATCTAGGCCCCGGTACTTCGAAAATTTCTGGGCA
CTTCTTTCCGACGCATGTCCCAAAAAGTAACTGTTGTTCTTTTTTTCTTA
GAAAAACCTTGAACTCATTCCAACCCTCCGAACATTCACGTGTTATCCCA
TGATCCTATGATGCCATGCTTGCCCTCCCATGATCCCATGATCCTCGTGA
GACCCTTGCCGTAAATCCACGCCTGACCTGACTTGATCTCTGCTGGGCTA
TGTTGGATGGGACGTCGGCCATCATAATCCCAGTACAAGGGCAAGGGTGG
AGGAGGCGGTTTCCTATCGGGGTTTGGGCTGTTTAGGGGATCTTCTGGCT
TACCTCAGGGGGACATGTCTCGATCGATCAAGTACACGGCGGCGAACCGT
AGCAGTCGCCAGGCCAGCAAAATCGCGATCAGGTGAAAGTAATAAAGAAG
TAAATGTCTACCTCTGTCTACCTCTGTGTAGCCTCATTTGTCGGGTTAAC
GAGGAGGCCGTTCATTATGCCCATGTATCGGGATGTGGACGATGGTTGAA
GGTGCCGTCGCAGCAGCATGCGATCGAGTCGGGTCGGGAAATCGAGTACA
GTATAGTGGGGAGATTGATTGACCTCTCCCCGAACACGAAGATGCGCCTT
ATTTCTTATTTCCTACCCGTCTCGTTAGTTGGGAGTTGATGTAGGAGAGC
CTCTACCCTCCGACTCATGAATGGGTGATGGGTGGTGCCCTGTCTTGTTT
TCTTTTCATGTCACTGCTGCCGCTGGGCAAGGCAAGCGCTGTCTCGGTTG
TCAATCATGACATCACGAACTACTCTAAAAGTACCTGAATGGGAACGGGT
TTCATCCCAAAGACCTACAGGCGCGCTCCATGTGTACATTTTGTACCTTT
TCGCGTTATACATTTAGATACTCGATACAGTCGGTACAGGATAGTCTACA
TGATTCGAGCGACAAGATAAGGGATAATCAACGTTGCTGTTGCTCCCTGC
CCCTCTTTTATTTTTATTAAAAAATATCTGGTGTCGGCTGTTTTGGCGGA
TCTACCCCTCTCTACCCCTCCCACTATCCCTTTACTACACTACACAGACA
GTACACAAACAGTACCCCTTTTAATACTACAATCTATATATAATCGGTCA
ACCGTCTACTGTAGTCTATAATCAACTGTATAATACTCTCTAATGTATAT
TGTCTCATAATGTCTACTGTCTCATAATACTCTCTACTGTCTCATAATAC
TGTGTTCAGGGCGAAGACCGTGGCGAAGGAACAATCGTCGGCGATCACGA
CTAGGGATGGTGTTGTGGTCGTGAGCTTCTTCCTTCCGGTGTTGGTTACC
AAGGTAAGGCCGGTAGCTTTTGGCAGGGGGGTAGGGGGTAAATCAGATAC
ATCCATACATCGGAAGGTGATATCGTTGGGGGGCACTTTTTTTTCATTCA
ACTGGGGGGTTGGATCTACCCTGCTGGCTCGCCATGTTATTCCAGTCATT
TCAATCCACCGTCTTGAGTGTTTCCAAGCCGGTATCCGTTCACCACGACT
TTTAATCGTAACCCTAACCCTCATCGCTATTTAAAACCTTTCCACCCTAA
CCCTCTACCATCTCTGCGTTCTCGTTGGACACCCAGGGCGCGGACGGAAA
GTGGATTGTAGAGTGGGACTACGAAAACCTCCTAAGCCTTCATTCGGCGG
GGATCGACATGCGCGTCACCCGGGTGGGGTTTGTACGTCACCTGGATGGG
ATTAGTCCGAAGGAGGAAGAAGAGGTGGCCAAGGCGCTGGTCCCTTTTTC
GTGTGTTCCCGTGTTTCTAGACACGCCTCTCGCCACCAAGTTCTACCGAG
ACTTTTGTAAGGTATGGGGTTTCAAATTGTACGCATGACGGGGACAGGGG
ACATAGAGGAACAACAACTGTGCTGTTCAAAAACGGACATAAAAGGGTTT
CAGCGCTCATTATAACATGTATAACATGGGGAGTGAGGCATAAATTATAA
CTGTGTAAGAAAATATTTATAATATGTAGTAGTATGTGGTAGGTAAAGAC
GGGACTGTACGAGACTGTCTCGGGGTCGGTTGGGAGCTAGGGCAGGGGAT
GATTGGAGAAAGACGCGACTGTGCTTCACGTATCTAGGCCACAAGCATAG
AAAATGCGCATAGTTTTACGAGAATAGAATCATGAAGCCGTCTGATGATG
GGCACGAAGCACTTGTCGGAGGGATGTCAGAGTTGATTGAAGGAGGGATG
TCGAAGAGGATAGGAGAAGGGATGTAAAAAAGATTGCTGTCCGTGCTTCC
GTGGTAGTTTTGTAGCTCCATACCTTTTTTACTCGGGGGGGTTTGATGTC
CTCCCACCCCCCAACGACATAGCACCGCTTAGCACCGCATAGCACCGCTT
CGTCGAAAAGCTTTTTCATCCAAGTACGACAGGCTGATGATATGTTTGTA
GATGGGTGTGTAATATGATTAAATTGCAAACACCAGAGCAATCCACCAGA
GCAATCCGGCCCTGTCTGAAGTGATGCTATCATTGTGATGCTATCATAGT
GATTCTATCATAGTGATGCTATCATAGTGATTCTATCATAGTGATGCTAT
CATAGTGATGCTATCATAGTGATGCTATCATAGTGATGCTATCATTGTCA
GTCATCCTCCTAATCCTCCTAATAAGAAATCAATAATATTTGTTCCGAAA
CATTTAATCAGACGCGACAAAGGCGAAATAATCTCTCTACAGTTTATATC
TAACCCCTCAGAAGGTTCTCAACTGACCTTGCGCTTCCCCTGCATGTGTG
TGTGGTGTGTGTATGTGTATGTTTGCGTGTGCCGACTCTTGTTGGAAACA
TAGGGCATTTTGTGGCCGGTCTTTCACCACGTTGTGGACGTCTATGGAGA
TCTGGTGATGCGGTTCTTCAATCAAGACACCCTCAAGGACCTGTGGCAGT
GCTACGTTATCGTCAACCGAAGATTTAGGGACAGGGTCGTCGAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig5636:610..6256-

>mRNA_H-elongata_contig5636.13084.1 ID=mRNA_H-elongata_contig5636.13084.1|Name=mRNA_H-elongata_contig5636.13084.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1902bp|location=Sequence derived from alignment at H-elongata_contig5636:610..6256- (Himanthalia elongata Himel1 dioecious)
ATGGAACGGCCTTCACCACCGACTCCGGCATTCGAGATCTCCTTCGGCGT
GGAAGCCGGGTTGGGTCAGGGGGAGATAATATATGTCTGTGGCTCCTGCC
CCTCGCTGGGGTCGAAAGATCCTTCGAGAGCGCTGAGGCTCGTGACCGAC
CCCGTGAGCTACCCGGTGTGGAGCTCTGACCCTGTGTCGGTGCCCCTCGG
GAATAAGGTGACGTATCGATACTGCGTGGTGTCAGGGGGCAAGTTCAAGA
GATGGGAAAATATTTCGAACGACAGATGGAACGGCCTTCACCACCGACTC
CGGCATTCGAGATCTCCTTCGGCGTGGAAGCCGGGTTGGGTCAGGGGGAG
ATAATATATGTCTGTGGCTCCTGCCCCTCGCTGGGGTCGAAAGATCCTTC
GAGAGCGCTGAGGCTCGTGACCGACCCCGTGAGCTACCCGGTGTGGAGCT
CTGACCCTGTGTCGGTGCCCCTCGGGAATAAGGTGACGTATCGATACTGC
GTGGTGTCAGGGGGCAAGTTCAAGAGATGGGAAAATATTTCGAACGACAG
AGAGTTGGATCCGGTCACCGAACCGTCCAAGGCCCTCGTCATGGTGGAGG
ACATTTTGGACGAGAGAGTTGGATCCGGTCACCGAACCGTCCAAGGCCCT
CGTCATGGTGGAGGACATTTTGGACGAGTACAAGGGCAAGGGTGGAGGAG
GCGGTTTCCTATCGGGGTTTGGGCTGTTTAGGGGATCTTCTGGCTTACCT
CAGGGGGACATGTCTCGATCGATCAAGTACACGGCGGCGAACCGTAGCAG
TCGCCAGGCCAGCAAAATCGCGATCAGTACAAGGGCAAGGGTGGAGGAGG
CGGTTTCCTATCGGGGTTTGGGCTGTTTAGGGGATCTTCTGGCTTACCTC
AGGGGGACATGTCTCGATCGATCAAGTACACGGCGGCGAACCGTAGCAGT
CGCCAGGCCAGCAAAATCGCGATCAGGGCGAAGACCGTGGCGAAGGAACA
ATCGTCGGCGATCACGACTAGGGATGGTGTTGTGGTCGTGAGCTTCTTCC
TTCCGGTGTTGGTTACCAAGGGCGAAGACCGTGGCGAAGGAACAATCGTC
GGCGATCACGACTAGGGATGGTGTTGTGGTCGTGAGCTTCTTCCTTCCGG
TGTTGGTTACCAAGGGCGCGGACGGAAAGTGGATTGTAGAGTGGGACTAC
GAAAACCTCCTAAGCCTTCATTCGGCGGGGATCGACATGCGCGTCACCCG
GGTGGGGTTTGTACGTCACCTGGATGGGATTAGTCCGAAGGAGGAAGAAG
AGGTGGCCAAGGCGCTGGTCCCTTTTTCGTGTGTTCCCGTGTTTCTAGAC
ACGCCTCTCGCCACCAAGTTCTACCGAGACTTTTGTAAGGGCGCGGACGG
AAAGTGGATTGTAGAGTGGGACTACGAAAACCTCCTAAGCCTTCATTCGG
CGGGGATCGACATGCGCGTCACCCGGGTGGGGTTTGTACGTCACCTGGAT
GGGATTAGTCCGAAGGAGGAAGAAGAGGTGGCCAAGGCGCTGGTCCCTTT
TTCGTGTGTTCCCGTGTTTCTAGACACGCCTCTCGCCACCAAGTTCTACC
GAGACTTTTGTAAGGGCATTTTGTGGCCGGTCTTTCACCACGTTGTGGAC
GTCTATGGAGATCTGGTGATGCGGTTCTTCAATCAAGACACCCTCAAGGA
CCTGTGGCAGTGCTACGTTATCGTCAACCGAAGATTTAGGGACAGGGTCG
TCGAGGTAGGCATTTTGTGGCCGGTCTTTCACCACGTTGTGGACGTCTAT
GGAGATCTGGTGATGCGGTTCTTCAATCAAGACACCCTCAAGGACCTGTG
GCAGTGCTACGTTATCGTCAACCGAAGATTTAGGGACAGGGTCGTCGAGG
TA
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