mRNA_H-elongata_contig56340.13080.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig56340.13080.1 vs. uniprot
Match: A0A6H5JI91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI91_9PHAE) HSP 1 Score: 296 bits (758), Expect = 1.030e-94 Identity = 161/255 (63.14%), Postives = 192/255 (75.29%), Query Frame = 1
Query: 13 ELVMGVMLGVSRSIPRAHDSMKRGEWAKKDFRGCSLRGKVLGIVGFGSVGRDLARVAIAFGMVVLVAAPLSKSYAAPSVSVSRETESDPSWLKRRMLESEIGMTEPPQRVPLKDLLSKSDFLSLHVPLAPGTSGMIGTRELALMKPSAMVINAARGGVVDEQALLSALERGRLGGAALDVFSSEKVPLEDHIVSLCSLPNVICTPHIGGSTVEAGERVLVEVCGAVLEALRGTLSRDRIVNGNPETGVRHERLSS 777
ELVMG+MLGVSRSI AHD+ +RGEWAK +F G +L GK LGIVGFGSVG LAR+A+AFGMVV++A S P+ R E DP +R + S+ G+T PP +PL +LLSKSDF S+H PL T G+I RELALMKPSA+VINAARGGVVDE ALL +LE+G LGGAALDVF E+ PL+DHIV+LC LPNV+CTPHIGGST EAGERVL EVCGAV++ +GTL +IVNG P+ VR +RL S
Sbjct: 138 ELVMGLMLGVSRSISPAHDTTRRGEWAKSNFTGRTLSGKTLGIVGFGSVGIALARLAVAFGMVVMIAEGSS-----PTPCSGRAEEIDPRASEREGMASQAGVTLPP--LPLDELLSKSDFFSVHCPLTADTKGLISRRELALMKPSAVVINAARGGVVDELALLQSLEQGHLGGAALDVFECERSPLQDHIVNLCRLPNVLCTPHIGGSTEEAGERVLAEVCGAVVDFFQGTLPASKIVNGAPDMTVRLKRLGS 385
BLAST of mRNA_H-elongata_contig56340.13080.1 vs. uniprot
Match: A0A7C0Z386_9ARCH (Hydroxyacid dehydrogenase n=3 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A7C0Z386_9ARCH) HSP 1 Score: 184 bits (466), Expect = 5.570e-52 Identity = 106/230 (46.09%), Postives = 145/230 (63.04%), Query Frame = 1
Query: 13 ELVMGVMLGVSRSIPRAHDSMKRGEWAKKDFRGCSLRGKVLGIVGFGSVGRDLARVAIAFGMVVLVAAPLSKSYAAPSVSVSRETESDPSWLKRRMLESEIGMTEPPQRVPLKDLLSKSDFLSLHVPLAPGTSGMIGTRELALMKPSAMVINAARGGVVDEQALLSALERGRLGGAALDVFSSEKVPLEDHIVSLCSLPNVICTPHIGGSTVEAGERVLVEVCGAVLEAL 702
EL +G++L ++R IPRA SMK G+WAKK F+G LRGK LG++G G +G +AR+A AFGM +L+ ++ T P L+ LE+E +PL+ LL +SD +S+HVPL P T MIG +E+ALMK A +IN +RG ++DE+AL ALE G+LGGAALDVF +E P D+ +L LPNV+CTPHIG TVEA + + ++EAL
Sbjct: 106 ELTLGLLLCLARQIPRADQSMKEGKWAKKLFKGWQLRGKTLGVIGLGHIGEKVARLAKAFGMKILI---------------TKRTPPPPEVLEE--LEAEF--------IPLEQLLQRSDVVSIHVPLTPQTRHMIGEKEIALMKNGAFIINTSRGQIIDEKALYKALESGKLGGAALDVFETE--PPTDY--ALMRLPNVVCTPHIGAQTVEAQKAAATLLAEKIIEAL 306
BLAST of mRNA_H-elongata_contig56340.13080.1 vs. uniprot
Match: D7FGX2_ECTSI (Phosphoglycerate dehydrogenase, incomplete n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX2_ECTSI) HSP 1 Score: 174 bits (441), Expect = 2.620e-48 Identity = 106/199 (53.27%), Postives = 129/199 (64.82%), Query Frame = 1
Query: 13 ELVMGVMLGVSRSIPRAHDSMKRGEWAKKDFRGCSLRGKVLGIVGFGSVGRDLARVAIAFGMVVLVAAPLSKSYAAPSVSVSRETESDPSWLKRRMLESEIGMTEPPQRVPLKDLLSKSDFLSLHVPLAPGTSGMIGTRELALMKPSAMVINAARGGVVDEQALLSALERGRLGGAALDVFSSEKVPLEDHIVSLCSLP 609
ELVMG+MLGVSRSI A D+ +RGEWAK +F G +L GK LGIVGFGSVG LAR+A+AFGMVV++A S P+ R E DP +R S+ G+T PP +PL +LLSKSDFLS+H PL T G+I RELALMKPSA+VINAARGGVVDE LG L + + + P + LCS+P
Sbjct: 93 ELVMGLMLGVSRSISSARDTTRRGEWAKSNFTGRTLSGKTLGIVGFGSVGIALARLAVAFGMVVMIAEGSS-----PTPCSGRAEEIDPRASEREATASQAGVTLPP--LPLDELLSKSDFLSVHCPLTADTKGLISRRELALMKPSAVVINAARGGVVDE-----------LGARVLSLSNFHQRPSDRAPRELCSVP 273
BLAST of mRNA_H-elongata_contig56340.13080.1 vs. uniprot
Match: UPI0019919088 (Phosphoglycerate dehydrogenase n=1 Tax=Cytophagaceae bacterium TaxID=2026729 RepID=UPI0019919088) HSP 1 Score: 174 bits (440), Expect = 6.090e-48 Identity = 105/236 (44.49%), Postives = 138/236 (58.47%), Query Frame = 1
Query: 13 ELVMGVMLGVSRSIPRAHDSMKRGEWAKKDFRGCSLRGKVLGIVGFGSVGRDLARVAIAFGMVVLVAAPLSKSYAAPSVSVSRETESDPSWLKRRMLESEIGMTEPPQRVPLKDLLSKSDFLSLHVPLAPGTSGMIGTRELALMKPSAMVINAARGGVVDEQALLSALERGRLGGAALDVFSSEKVPLEDHIVSLCSLPNVICTPHIGGSTVEAGERVLVEVCGAVLEAL-RGTLS 717
EL M ++L V+R +P A SMK GEW KK F G L GK LG+VG G +G +A+ A AFGM VLV DP L R E ++ Q PL D++ KSD +S+HVPL T+G+IG + A+MKP A+++N ARGGVVDE ALL AL+ ++ GAALDV+ +E + + L SLPNV+ TPH+G ST EA + V +E+ AV L G LS
Sbjct: 107 ELTMALLLAVARKVPAADRSMKAGEWDKKSFNGFELYGKTLGLVGAGRIGGQVAKRARAFGMSVLVY--------------------DPYLLSERARELDV------QLAPLDDVIRKSDVISVHVPLTEATAGLIGPAQFAMMKPGALLLNVARGGVVDEAALLVALQEKKIAGAALDVYETEPLQKDS---PLRSLPNVVMTPHLGASTAEAQQNVAIEIAEAVRNCLAEGDLS 313
BLAST of mRNA_H-elongata_contig56340.13080.1 vs. uniprot
Match: A0A7J4FBR4_9ARCH (Hydroxyacid dehydrogenase n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A7J4FBR4_9ARCH) HSP 1 Score: 172 bits (436), Expect = 1.600e-47 Identity = 108/232 (46.55%), Postives = 140/232 (60.34%), Query Frame = 1
Query: 13 ELVMGVMLGVSRSIPRAHDSMKRGEWAKKDFRGCSLRGKVLGIVGFGSVGRDLARVAIAFGMVVLVAAPLSKSYAAPSVSVSRETESDPSWLKRRMLESEIGMTEPPQRVPLKDLLSKSDFLSLHVPLAPGTSGMIGTRELALMKPSAMVINAARGGVVDEQALLSALERGRLGGAALDVFSSEKVPLEDHIVSLCSLPNVICTPHIGGSTVEAGERVLVEVCGAVLEALRG 708
ELV G+M+G++RSIPRA MK G+WAKK+ G L+GK +GIVG G +GR + + A AFGM VLV R + R L++E+ V L++LL +SDF++LHVPL T MIG EL LMK +A +IN +RGGVVD +AL+ AL G + GAALDV+ EK P +D +L +PNVICTPHIG TVEA + V+EALRG
Sbjct: 105 ELVFGLMIGLARSIPRADRLMKEGKWAKKELMGTQLQGKTIGIVGLGRIGRAVGKRARAFGMRVLV----------------RTRHPNRKMDALRELDAEV--------VSLEELLRRSDFVTLHVPLTEETYHMIGEGELRLMKRTAYLINTSRGGVVDTRALIEALRGGWIAGAALDVY--EKEPPDDP--ALVGMPNVICTPHIGSQTVEAQRACATIIAKKVIEALRG 308
BLAST of mRNA_H-elongata_contig56340.13080.1 vs. uniprot
Match: A0A7V3M956_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7V3M956_9CHLR) HSP 1 Score: 171 bits (433), Expect = 4.690e-47 Identity = 106/230 (46.09%), Postives = 136/230 (59.13%), Query Frame = 1
Query: 13 ELVMGVMLGVSRSIPRAHDSMKRGEWAKKDFRGCSLRGKVLGIVGFGSVGRDLARVAIAFGMVVLVAAPLSKSYAAPSVSVSRETESDPSWLKRRMLESEIGMTEPPQRVPLKDLLSKSDFLSLHVPLAPGTSGMIGTRELALMKPSAMVINAARGGVVDEQALLSALERGRLGGAALDVFSSEKVPLEDHIVSLCSLPNVICTPHIGGSTVEAGERVLVEVCGAVLEAL 702
EL +G+ML ++R IP+AH S+K G W K+ F G L+GK+LGIVG G +GR LA+ A A M+V+ +DP + L+ + + VPL+ LL SDF+S+HVPL P TS MIG REL LMKP+A +IN ARGG+VDE+AL ALE GR+ GAA+DVF E P++ L VI TPHIG ST EA +EV VLE L
Sbjct: 102 ELTLGLMLSLARRIPQAHFSLKEGRWEKQAFLGTQLQGKILGIVGLGRIGRALAKRATALEMIVIA--------------------TDPFISLEKALQLGVNL------VPLEKLLQISDFVSIHVPLTPQTSKMIGWRELCLMKPTAYLINTARGGIVDEEALARALEEGRIAGAAVDVFEEEP-PVDS---PLLRSDRVILTPHIGASTQEAQALASLEVARKVLEIL 301
BLAST of mRNA_H-elongata_contig56340.13080.1 vs. uniprot
Match: A0A151BMX1_9ARCH (3-phosphoglycerate dehydrogenase n=1 Tax=Candidatus Bathyarchaeota archaeon B26-2 TaxID=1779371 RepID=A0A151BMX1_9ARCH) HSP 1 Score: 168 bits (425), Expect = 5.930e-46 Identity = 101/214 (47.20%), Postives = 134/214 (62.62%), Query Frame = 1
Query: 13 ELVMGVMLGVSRSIPRAHDSMKRGEWAKKDFRGCSLRGKVLGIVGFGSVGRDLARVAIAFGMVVLVAAPLSKSYAAPSVSVSRETESDPSWLKRRMLESEIGMTEPPQRVPLKDLLSKSDFLSLHVPLAPGTSGMIGTRELALMKPSAMVINAARGGVVDEQALLSALERGRLGGAALDVFSSEKVPLEDHIVSLCSLPNVICTPHIGGSTVEA 654
EL +G++L ++R IP A DSMK+G+W K +G L+GK +G++G G+VG +AR+A AFGM VL ++ T P L+ LE+E V L+DLL +SD +SLHVPL T GM+GTREL LMK A+++N +RG +VDE+ALL AL GRLGGAALDV++ E P D + L L NV+CTPHIG T EA
Sbjct: 100 ELTIGLILALARGIPSAVDSMKKGKWLKGRLKGWQLKGKTIGLIGLGNVGLRVARLAKAFGMKVLF---------------TKRTPPSPDVLQE--LEAEF--------VSLEDLLRRSDIVSLHVPLTDETRGMVGTRELGLMKRGAILVNTSRGAIVDEEALLEALRSGRLGGAALDVYTVE--PPRD--MRLIQLSNVVCTPHIGAQTEEA 284
BLAST of mRNA_H-elongata_contig56340.13080.1 vs. uniprot
Match: A0A0N0RFV1_9CHLR (D-3-phosphoglycerate dehydrogenase n=1 Tax=Ardenticatena maritima TaxID=872965 RepID=A0A0N0RFV1_9CHLR) HSP 1 Score: 174 bits (442), Expect = 6.230e-46 Identity = 105/233 (45.06%), Postives = 132/233 (56.65%), Query Frame = 1
Query: 13 ELVMGVMLGVSRSIPRAHDSMKRGEWAKKDFRGCSLRGKVLGIVGFGSVGRDLARVAIAFGMVVLVAAPLSKSYAAPSVSVSRETESDPSWLKRRMLESEIGMTEPPQRVPLKDLLSKSDFLSLHVPLAPGTSGMIGTRELALMKPSAMVINAARGGVVDEQALLSALERGRLGGAALDVFSSEKVPLEDHIVSLCSLPNVICTPHIGGSTVEAGERVLVEVCGAVLEALRGT 711
E +G+ML ++R IP A SMK G W KK F+G SL GK LGI+GFG +GR +A+ A A GM VLV P L E+ + V L DLL +SDF+SLHVP P +I ELALMKP+A +IN ARGG+V+E+ALL AL GR+ GA +DVF E P DH L P V+ TPHIG STVEA + +E+ ++E L GT
Sbjct: 107 EHTIGLMLALARHIPAADHSMKEGRWEKKRFKGTSLDGKTLGIIGFGRIGRQVAKRAKALGMRVLVNQP--------------------------RLTPELALEAGVTPVDLPDLLRESDFVSLHVPWRPENENLIDREELALMKPTAYLINTARGGIVNEEALLEALNEGRIAGAGIDVFKEE--PALDH--PLAKHPKVVATPHIGASTVEAQKNAAIEIAEKIIEFLGGT 309
BLAST of mRNA_H-elongata_contig56340.13080.1 vs. uniprot
Match: A0A3R7BPN3_9ARCH (3-phosphoglycerate dehydrogenase n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A3R7BPN3_9ARCH) HSP 1 Score: 167 bits (423), Expect = 1.440e-45 Identity = 106/231 (45.89%), Postives = 141/231 (61.04%), Query Frame = 1
Query: 13 ELVMGVMLGVSRSIPRAHDSMKRGEWAKKDFRGCSLRGKVLGIVGFGSVGRDLARVAIAFGMVVLVAAPLSKSYAAPSVSVSRETESDPSWLKRRMLESEIGMTEPPQRVPLKDLLSKSDFLSLHVPLAPGTSGMIGTRELALMKPSAMVINAARGGVVDEQALLSALERGRLGGAALDVFSSEKVPLEDHIVSLCSLPNVICTPHIGGSTVEAGERVLVEVCGAVLEALR 705
EL +G+ML ++RSIP A +MK+GEW KK RG LRGK LGI+GFG +G +A+ A AF M +LV V++ R + ++K E+G + V LK+LL +SDF++LHVPL P T MI REL++MK A +IN +RGGVVDE+AL AL G+L GAALDV+ +E P ED SL + V+CTPHIG T EA V V ++E L+
Sbjct: 105 ELTLGLMLSLARSIPLADRTMKQGEWIKKRLRGRELRGKTLGIIGFGRIGYQVAKRARAFEMKILVY----------DVAIQRVMK----YVK------EVGG----EAVTLKELLRRSDFVTLHVPLLPQTRHMISERELSMMKDGAYLINTSRGGVVDEEALKEALRSGKLAGAALDVYETE--PPED--TSLTGMDKVVCTPHIGAQTEEAQRANAVIVAEKLIEILK 307
BLAST of mRNA_H-elongata_contig56340.13080.1 vs. uniprot
Match: A0A3N5MG71_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5MG71_9CHLR) HSP 1 Score: 167 bits (423), Expect = 1.520e-45 Identity = 104/239 (43.51%), Postives = 135/239 (56.49%), Query Frame = 1
Query: 13 ELVMGVMLGVSRSIPRAHDSMKRGEWAKKDFRGCSLRGKVLGIVGFGSVGRDLARVAIAFGMVVLVAAPLSKSYAAPSVSVSRETESDPSWLKRRMLESEIGMTEPPQRVPLKDLLSKSDFLSLHVPLAPGTSGMIGTRELALMKPSAMVINAARGGVVDEQALLSALERGRLGGAALDVFSSEKVPLEDHIVSLCSLPNVICTPHIGGSTVEAGERVLVEVCGAVLEALRGTLSRDRI 729
EL M +MLG++RS+PRA ++K G+W KK+ G L GKVLG++G G++G +A A AFGM VL PL L E + + V L ++ S++DF+SLHVPL T GMIG + L MKP +I AARGGV+DE ALL +LE G + GAALDVFS E D L + PNV+ TPHIG T EA R +++ VL ALRG R R+
Sbjct: 104 ELTMALMLGLARSLPRADAALKAGKWIKKELEGIELNGKVLGLIGVGNIGSLVANRAAAFGMTVLGYDPL--------------------------LSGEQIRSRQAEPVSLDEIYSRADFISLHVPLIAETRGMIGEQALGKMKPGVRLICAARGGVIDEAALLKSLESGHVAGAALDVFSKEPPGQID----LLAHPNVVGTPHIGAQTEEAQGRASIDIATEVLAALRGEPLRWRV 312 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56340.13080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig56340.13080.1 >prot_H-elongata_contig56340.13080.1 ID=prot_H-elongata_contig56340.13080.1|Name=mRNA_H-elongata_contig56340.13080.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=256bp MGVMLGVSRSIPRAHDSMKRGEWAKKDFRGCSLRGKVLGIVGFGSVGRDLback to top mRNA from alignment at H-elongata_contig56340:761..2881- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig56340.13080.1 ID=mRNA_H-elongata_contig56340.13080.1|Name=mRNA_H-elongata_contig56340.13080.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2121bp|location=Sequence derived from alignment at H-elongata_contig56340:761..2881- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig56340:761..2881- >mRNA_H-elongata_contig56340.13080.1 ID=mRNA_H-elongata_contig56340.13080.1|Name=mRNA_H-elongata_contig56340.13080.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1536bp|location=Sequence derived from alignment at H-elongata_contig56340:761..2881- (Himanthalia elongata Himel1 dioecious)back to top |