mRNA_H-elongata_contig56340.13080.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56340.13080.1
Unique NamemRNA_H-elongata_contig56340.13080.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig56340.13080.1 vs. uniprot
Match: A0A6H5JI91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI91_9PHAE)

HSP 1 Score: 296 bits (758), Expect = 1.030e-94
Identity = 161/255 (63.14%), Postives = 192/255 (75.29%), Query Frame = 1
Query:   13 ELVMGVMLGVSRSIPRAHDSMKRGEWAKKDFRGCSLRGKVLGIVGFGSVGRDLARVAIAFGMVVLVAAPLSKSYAAPSVSVSRETESDPSWLKRRMLESEIGMTEPPQRVPLKDLLSKSDFLSLHVPLAPGTSGMIGTRELALMKPSAMVINAARGGVVDEQALLSALERGRLGGAALDVFSSEKVPLEDHIVSLCSLPNVICTPHIGGSTVEAGERVLVEVCGAVLEALRGTLSRDRIVNGNPETGVRHERLSS 777
            ELVMG+MLGVSRSI  AHD+ +RGEWAK +F G +L GK LGIVGFGSVG  LAR+A+AFGMVV++A   S     P+    R  E DP   +R  + S+ G+T PP  +PL +LLSKSDF S+H PL   T G+I  RELALMKPSA+VINAARGGVVDE ALL +LE+G LGGAALDVF  E+ PL+DHIV+LC LPNV+CTPHIGGST EAGERVL EVCGAV++  +GTL   +IVNG P+  VR +RL S
Sbjct:  138 ELVMGLMLGVSRSISPAHDTTRRGEWAKSNFTGRTLSGKTLGIVGFGSVGIALARLAVAFGMVVMIAEGSS-----PTPCSGRAEEIDPRASEREGMASQAGVTLPP--LPLDELLSKSDFFSVHCPLTADTKGLISRRELALMKPSAVVINAARGGVVDELALLQSLEQGHLGGAALDVFECERSPLQDHIVNLCRLPNVLCTPHIGGSTEEAGERVLAEVCGAVVDFFQGTLPASKIVNGAPDMTVRLKRLGS 385          
BLAST of mRNA_H-elongata_contig56340.13080.1 vs. uniprot
Match: A0A7C0Z386_9ARCH (Hydroxyacid dehydrogenase n=3 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A7C0Z386_9ARCH)

HSP 1 Score: 184 bits (466), Expect = 5.570e-52
Identity = 106/230 (46.09%), Postives = 145/230 (63.04%), Query Frame = 1
Query:   13 ELVMGVMLGVSRSIPRAHDSMKRGEWAKKDFRGCSLRGKVLGIVGFGSVGRDLARVAIAFGMVVLVAAPLSKSYAAPSVSVSRETESDPSWLKRRMLESEIGMTEPPQRVPLKDLLSKSDFLSLHVPLAPGTSGMIGTRELALMKPSAMVINAARGGVVDEQALLSALERGRLGGAALDVFSSEKVPLEDHIVSLCSLPNVICTPHIGGSTVEAGERVLVEVCGAVLEAL 702
            EL +G++L ++R IPRA  SMK G+WAKK F+G  LRGK LG++G G +G  +AR+A AFGM +L+               ++ T   P  L+   LE+E         +PL+ LL +SD +S+HVPL P T  MIG +E+ALMK  A +IN +RG ++DE+AL  ALE G+LGGAALDVF +E  P  D+  +L  LPNV+CTPHIG  TVEA +     +   ++EAL
Sbjct:  106 ELTLGLLLCLARQIPRADQSMKEGKWAKKLFKGWQLRGKTLGVIGLGHIGEKVARLAKAFGMKILI---------------TKRTPPPPEVLEE--LEAEF--------IPLEQLLQRSDVVSIHVPLTPQTRHMIGEKEIALMKNGAFIINTSRGQIIDEKALYKALESGKLGGAALDVFETE--PPTDY--ALMRLPNVVCTPHIGAQTVEAQKAAATLLAEKIIEAL 306          
BLAST of mRNA_H-elongata_contig56340.13080.1 vs. uniprot
Match: D7FGX2_ECTSI (Phosphoglycerate dehydrogenase, incomplete n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX2_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 2.620e-48
Identity = 106/199 (53.27%), Postives = 129/199 (64.82%), Query Frame = 1
Query:   13 ELVMGVMLGVSRSIPRAHDSMKRGEWAKKDFRGCSLRGKVLGIVGFGSVGRDLARVAIAFGMVVLVAAPLSKSYAAPSVSVSRETESDPSWLKRRMLESEIGMTEPPQRVPLKDLLSKSDFLSLHVPLAPGTSGMIGTRELALMKPSAMVINAARGGVVDEQALLSALERGRLGGAALDVFSSEKVPLEDHIVSLCSLP 609
            ELVMG+MLGVSRSI  A D+ +RGEWAK +F G +L GK LGIVGFGSVG  LAR+A+AFGMVV++A   S     P+    R  E DP   +R    S+ G+T PP  +PL +LLSKSDFLS+H PL   T G+I  RELALMKPSA+VINAARGGVVDE           LG   L + +  + P +     LCS+P
Sbjct:   93 ELVMGLMLGVSRSISSARDTTRRGEWAKSNFTGRTLSGKTLGIVGFGSVGIALARLAVAFGMVVMIAEGSS-----PTPCSGRAEEIDPRASEREATASQAGVTLPP--LPLDELLSKSDFLSVHCPLTADTKGLISRRELALMKPSAVVINAARGGVVDE-----------LGARVLSLSNFHQRPSDRAPRELCSVP 273          
BLAST of mRNA_H-elongata_contig56340.13080.1 vs. uniprot
Match: UPI0019919088 (Phosphoglycerate dehydrogenase n=1 Tax=Cytophagaceae bacterium TaxID=2026729 RepID=UPI0019919088)

HSP 1 Score: 174 bits (440), Expect = 6.090e-48
Identity = 105/236 (44.49%), Postives = 138/236 (58.47%), Query Frame = 1
Query:   13 ELVMGVMLGVSRSIPRAHDSMKRGEWAKKDFRGCSLRGKVLGIVGFGSVGRDLARVAIAFGMVVLVAAPLSKSYAAPSVSVSRETESDPSWLKRRMLESEIGMTEPPQRVPLKDLLSKSDFLSLHVPLAPGTSGMIGTRELALMKPSAMVINAARGGVVDEQALLSALERGRLGGAALDVFSSEKVPLEDHIVSLCSLPNVICTPHIGGSTVEAGERVLVEVCGAVLEAL-RGTLS 717
            EL M ++L V+R +P A  SMK GEW KK F G  L GK LG+VG G +G  +A+ A AFGM VLV                     DP  L  R  E ++      Q  PL D++ KSD +S+HVPL   T+G+IG  + A+MKP A+++N ARGGVVDE ALL AL+  ++ GAALDV+ +E +  +     L SLPNV+ TPH+G ST EA + V +E+  AV   L  G LS
Sbjct:  107 ELTMALLLAVARKVPAADRSMKAGEWDKKSFNGFELYGKTLGLVGAGRIGGQVAKRARAFGMSVLVY--------------------DPYLLSERARELDV------QLAPLDDVIRKSDVISVHVPLTEATAGLIGPAQFAMMKPGALLLNVARGGVVDEAALLVALQEKKIAGAALDVYETEPLQKDS---PLRSLPNVVMTPHLGASTAEAQQNVAIEIAEAVRNCLAEGDLS 313          
BLAST of mRNA_H-elongata_contig56340.13080.1 vs. uniprot
Match: A0A7J4FBR4_9ARCH (Hydroxyacid dehydrogenase n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A7J4FBR4_9ARCH)

HSP 1 Score: 172 bits (436), Expect = 1.600e-47
Identity = 108/232 (46.55%), Postives = 140/232 (60.34%), Query Frame = 1
Query:   13 ELVMGVMLGVSRSIPRAHDSMKRGEWAKKDFRGCSLRGKVLGIVGFGSVGRDLARVAIAFGMVVLVAAPLSKSYAAPSVSVSRETESDPSWLKRRMLESEIGMTEPPQRVPLKDLLSKSDFLSLHVPLAPGTSGMIGTRELALMKPSAMVINAARGGVVDEQALLSALERGRLGGAALDVFSSEKVPLEDHIVSLCSLPNVICTPHIGGSTVEAGERVLVEVCGAVLEALRG 708
            ELV G+M+G++RSIPRA   MK G+WAKK+  G  L+GK +GIVG G +GR + + A AFGM VLV                R    +      R L++E+        V L++LL +SDF++LHVPL   T  MIG  EL LMK +A +IN +RGGVVD +AL+ AL  G + GAALDV+  EK P +D   +L  +PNVICTPHIG  TVEA       +   V+EALRG
Sbjct:  105 ELVFGLMIGLARSIPRADRLMKEGKWAKKELMGTQLQGKTIGIVGLGRIGRAVGKRARAFGMRVLV----------------RTRHPNRKMDALRELDAEV--------VSLEELLRRSDFVTLHVPLTEETYHMIGEGELRLMKRTAYLINTSRGGVVDTRALIEALRGGWIAGAALDVY--EKEPPDDP--ALVGMPNVICTPHIGSQTVEAQRACATIIAKKVIEALRG 308          
BLAST of mRNA_H-elongata_contig56340.13080.1 vs. uniprot
Match: A0A7V3M956_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7V3M956_9CHLR)

HSP 1 Score: 171 bits (433), Expect = 4.690e-47
Identity = 106/230 (46.09%), Postives = 136/230 (59.13%), Query Frame = 1
Query:   13 ELVMGVMLGVSRSIPRAHDSMKRGEWAKKDFRGCSLRGKVLGIVGFGSVGRDLARVAIAFGMVVLVAAPLSKSYAAPSVSVSRETESDPSWLKRRMLESEIGMTEPPQRVPLKDLLSKSDFLSLHVPLAPGTSGMIGTRELALMKPSAMVINAARGGVVDEQALLSALERGRLGGAALDVFSSEKVPLEDHIVSLCSLPNVICTPHIGGSTVEAGERVLVEVCGAVLEAL 702
            EL +G+ML ++R IP+AH S+K G W K+ F G  L+GK+LGIVG G +GR LA+ A A  M+V+                     +DP     + L+  + +      VPL+ LL  SDF+S+HVPL P TS MIG REL LMKP+A +IN ARGG+VDE+AL  ALE GR+ GAA+DVF  E  P++     L     VI TPHIG ST EA     +EV   VLE L
Sbjct:  102 ELTLGLMLSLARRIPQAHFSLKEGRWEKQAFLGTQLQGKILGIVGLGRIGRALAKRATALEMIVIA--------------------TDPFISLEKALQLGVNL------VPLEKLLQISDFVSIHVPLTPQTSKMIGWRELCLMKPTAYLINTARGGIVDEEALARALEEGRIAGAAVDVFEEEP-PVDS---PLLRSDRVILTPHIGASTQEAQALASLEVARKVLEIL 301          
BLAST of mRNA_H-elongata_contig56340.13080.1 vs. uniprot
Match: A0A151BMX1_9ARCH (3-phosphoglycerate dehydrogenase n=1 Tax=Candidatus Bathyarchaeota archaeon B26-2 TaxID=1779371 RepID=A0A151BMX1_9ARCH)

HSP 1 Score: 168 bits (425), Expect = 5.930e-46
Identity = 101/214 (47.20%), Postives = 134/214 (62.62%), Query Frame = 1
Query:   13 ELVMGVMLGVSRSIPRAHDSMKRGEWAKKDFRGCSLRGKVLGIVGFGSVGRDLARVAIAFGMVVLVAAPLSKSYAAPSVSVSRETESDPSWLKRRMLESEIGMTEPPQRVPLKDLLSKSDFLSLHVPLAPGTSGMIGTRELALMKPSAMVINAARGGVVDEQALLSALERGRLGGAALDVFSSEKVPLEDHIVSLCSLPNVICTPHIGGSTVEA 654
            EL +G++L ++R IP A DSMK+G+W K   +G  L+GK +G++G G+VG  +AR+A AFGM VL                ++ T   P  L+   LE+E         V L+DLL +SD +SLHVPL   T GM+GTREL LMK  A+++N +RG +VDE+ALL AL  GRLGGAALDV++ E  P  D  + L  L NV+CTPHIG  T EA
Sbjct:  100 ELTIGLILALARGIPSAVDSMKKGKWLKGRLKGWQLKGKTIGLIGLGNVGLRVARLAKAFGMKVLF---------------TKRTPPSPDVLQE--LEAEF--------VSLEDLLRRSDIVSLHVPLTDETRGMVGTRELGLMKRGAILVNTSRGAIVDEEALLEALRSGRLGGAALDVYTVE--PPRD--MRLIQLSNVVCTPHIGAQTEEA 284          
BLAST of mRNA_H-elongata_contig56340.13080.1 vs. uniprot
Match: A0A0N0RFV1_9CHLR (D-3-phosphoglycerate dehydrogenase n=1 Tax=Ardenticatena maritima TaxID=872965 RepID=A0A0N0RFV1_9CHLR)

HSP 1 Score: 174 bits (442), Expect = 6.230e-46
Identity = 105/233 (45.06%), Postives = 132/233 (56.65%), Query Frame = 1
Query:   13 ELVMGVMLGVSRSIPRAHDSMKRGEWAKKDFRGCSLRGKVLGIVGFGSVGRDLARVAIAFGMVVLVAAPLSKSYAAPSVSVSRETESDPSWLKRRMLESEIGMTEPPQRVPLKDLLSKSDFLSLHVPLAPGTSGMIGTRELALMKPSAMVINAARGGVVDEQALLSALERGRLGGAALDVFSSEKVPLEDHIVSLCSLPNVICTPHIGGSTVEAGERVLVEVCGAVLEALRGT 711
            E  +G+ML ++R IP A  SMK G W KK F+G SL GK LGI+GFG +GR +A+ A A GM VLV  P                           L  E+ +      V L DLL +SDF+SLHVP  P    +I   ELALMKP+A +IN ARGG+V+E+ALL AL  GR+ GA +DVF  E  P  DH   L   P V+ TPHIG STVEA +   +E+   ++E L GT
Sbjct:  107 EHTIGLMLALARHIPAADHSMKEGRWEKKRFKGTSLDGKTLGIIGFGRIGRQVAKRAKALGMRVLVNQP--------------------------RLTPELALEAGVTPVDLPDLLRESDFVSLHVPWRPENENLIDREELALMKPTAYLINTARGGIVNEEALLEALNEGRIAGAGIDVFKEE--PALDH--PLAKHPKVVATPHIGASTVEAQKNAAIEIAEKIIEFLGGT 309          
BLAST of mRNA_H-elongata_contig56340.13080.1 vs. uniprot
Match: A0A3R7BPN3_9ARCH (3-phosphoglycerate dehydrogenase n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A3R7BPN3_9ARCH)

HSP 1 Score: 167 bits (423), Expect = 1.440e-45
Identity = 106/231 (45.89%), Postives = 141/231 (61.04%), Query Frame = 1
Query:   13 ELVMGVMLGVSRSIPRAHDSMKRGEWAKKDFRGCSLRGKVLGIVGFGSVGRDLARVAIAFGMVVLVAAPLSKSYAAPSVSVSRETESDPSWLKRRMLESEIGMTEPPQRVPLKDLLSKSDFLSLHVPLAPGTSGMIGTRELALMKPSAMVINAARGGVVDEQALLSALERGRLGGAALDVFSSEKVPLEDHIVSLCSLPNVICTPHIGGSTVEAGERVLVEVCGAVLEALR 705
            EL +G+ML ++RSIP A  +MK+GEW KK  RG  LRGK LGI+GFG +G  +A+ A AF M +LV            V++ R  +    ++K      E+G     + V LK+LL +SDF++LHVPL P T  MI  REL++MK  A +IN +RGGVVDE+AL  AL  G+L GAALDV+ +E  P ED   SL  +  V+CTPHIG  T EA     V V   ++E L+
Sbjct:  105 ELTLGLMLSLARSIPLADRTMKQGEWIKKRLRGRELRGKTLGIIGFGRIGYQVAKRARAFEMKILVY----------DVAIQRVMK----YVK------EVGG----EAVTLKELLRRSDFVTLHVPLLPQTRHMISERELSMMKDGAYLINTSRGGVVDEEALKEALRSGKLAGAALDVYETE--PPED--TSLTGMDKVVCTPHIGAQTEEAQRANAVIVAEKLIEILK 307          
BLAST of mRNA_H-elongata_contig56340.13080.1 vs. uniprot
Match: A0A3N5MG71_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5MG71_9CHLR)

HSP 1 Score: 167 bits (423), Expect = 1.520e-45
Identity = 104/239 (43.51%), Postives = 135/239 (56.49%), Query Frame = 1
Query:   13 ELVMGVMLGVSRSIPRAHDSMKRGEWAKKDFRGCSLRGKVLGIVGFGSVGRDLARVAIAFGMVVLVAAPLSKSYAAPSVSVSRETESDPSWLKRRMLESEIGMTEPPQRVPLKDLLSKSDFLSLHVPLAPGTSGMIGTRELALMKPSAMVINAARGGVVDEQALLSALERGRLGGAALDVFSSEKVPLEDHIVSLCSLPNVICTPHIGGSTVEAGERVLVEVCGAVLEALRGTLSRDRI 729
            EL M +MLG++RS+PRA  ++K G+W KK+  G  L GKVLG++G G++G  +A  A AFGM VL   PL                          L  E   +   + V L ++ S++DF+SLHVPL   T GMIG + L  MKP   +I AARGGV+DE ALL +LE G + GAALDVFS E     D    L + PNV+ TPHIG  T EA  R  +++   VL ALRG   R R+
Sbjct:  104 ELTMALMLGLARSLPRADAALKAGKWIKKELEGIELNGKVLGLIGVGNIGSLVANRAAAFGMTVLGYDPL--------------------------LSGEQIRSRQAEPVSLDEIYSRADFISLHVPLIAETRGMIGEQALGKMKPGVRLICAARGGVIDEAALLKSLESGHVAGAALDVFSKEPPGQID----LLAHPNVVGTPHIGAQTEEAQGRASIDIATEVLAALRGEPLRWRV 312          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56340.13080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI91_9PHAE1.030e-9463.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7C0Z386_9ARCH5.570e-5246.09Hydroxyacid dehydrogenase n=3 Tax=Candidatus Bathy... [more]
D7FGX2_ECTSI2.620e-4853.27Phosphoglycerate dehydrogenase, incomplete n=1 Tax... [more]
UPI00199190886.090e-4844.49Phosphoglycerate dehydrogenase n=1 Tax=Cytophagace... [more]
A0A7J4FBR4_9ARCH1.600e-4746.55Hydroxyacid dehydrogenase n=1 Tax=Candidatus Bathy... [more]
A0A7V3M956_9CHLR4.690e-4746.09Uncharacterized protein n=1 Tax=Anaerolineae bacte... [more]
A0A151BMX1_9ARCH5.930e-4647.203-phosphoglycerate dehydrogenase n=1 Tax=Candidatu... [more]
A0A0N0RFV1_9CHLR6.230e-4645.06D-3-phosphoglycerate dehydrogenase n=1 Tax=Ardenti... [more]
A0A3R7BPN3_9ARCH1.440e-4545.893-phosphoglycerate dehydrogenase n=1 Tax=Candidatu... [more]
A0A3N5MG71_9CHLR1.520e-4543.51Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56340contigH-elongata_contig56340:761..2881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score167.2
Seed ortholog evalue1e-38
Seed eggNOG ortholog264951.V5I608
KEGG rclassRC00031
KEGG koko:K00058
KEGG ReactionR01513
KEGG Pathwayko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230
KEGG ModuleM00020
EggNOG free text desc.D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
EggNOG OGs20G9M@147545,38GJA@33154,3NVPH@4751,3QN9K@4890,3S67S@5042,COG0111@1,KOG0068@2759
EC1.1.1.399,1.1.1.95
COG Functional cat.E
Best tax levelEurotiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Exons4
Model size1078
Cds size768
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56340.13080.1prot_H-elongata_contig56340.13080.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56340 1050..2860 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930917.1064057-UTR-H-elongata_contig56340:760..10491622930917.1064057-UTR-H-elongata_contig56340:760..1049Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56340 761..1049 -
1691679623.894932-UTR-H-elongata_contig56340:760..10491691679623.894932-UTR-H-elongata_contig56340:760..1049Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56340 761..1049 -
1622930917.3333728-UTR-H-elongata_contig56340:2860..28811622930917.3333728-UTR-H-elongata_contig56340:2860..2881Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56340 2861..2881 -
1691679623.952745-UTR-H-elongata_contig56340:2860..28811691679623.952745-UTR-H-elongata_contig56340:2860..2881Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56340 2861..2881 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930917.174502-CDS-H-elongata_contig56340:1049..12361622930917.174502-CDS-H-elongata_contig56340:1049..1236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56340 1050..1236 -
1691679623.9048908-CDS-H-elongata_contig56340:1049..12361691679623.9048908-CDS-H-elongata_contig56340:1049..1236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56340 1050..1236 -
1622930917.198625-CDS-H-elongata_contig56340:1455..15581622930917.198625-CDS-H-elongata_contig56340:1455..1558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56340 1456..1558 -
1691679623.912721-CDS-H-elongata_contig56340:1455..15581691679623.912721-CDS-H-elongata_contig56340:1455..1558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56340 1456..1558 -
1622930917.2147052-CDS-H-elongata_contig56340:1948..22791622930917.2147052-CDS-H-elongata_contig56340:1948..2279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56340 1949..2279 -
1691679623.9299026-CDS-H-elongata_contig56340:1948..22791691679623.9299026-CDS-H-elongata_contig56340:1948..2279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56340 1949..2279 -
1622930917.2870007-CDS-H-elongata_contig56340:2713..28601622930917.2870007-CDS-H-elongata_contig56340:2713..2860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56340 2714..2860 -
1691679623.9423091-CDS-H-elongata_contig56340:2713..28601691679623.9423091-CDS-H-elongata_contig56340:2713..2860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56340 2714..2860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56340.13080.1

>prot_H-elongata_contig56340.13080.1 ID=prot_H-elongata_contig56340.13080.1|Name=mRNA_H-elongata_contig56340.13080.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=256bp
MGVMLGVSRSIPRAHDSMKRGEWAKKDFRGCSLRGKVLGIVGFGSVGRDL
ARVAIAFGMVVLVAAPLSKSYAAPSVSVSRETESDPSWLKRRMLESEIGM
TEPPQRVPLKDLLSKSDFLSLHVPLAPGTSGMIGTRELALMKPSAMVINA
ARGGVVDEQALLSALERGRLGGAALDVFSSEKVPLEDHIVSLCSLPNVIC
TPHIGGSTVEAGERVLVEVCGAVLEALRGTLSRDRIVNGNPETGVRHERL
SSWVQ*
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mRNA from alignment at H-elongata_contig56340:761..2881-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56340.13080.1 ID=mRNA_H-elongata_contig56340.13080.1|Name=mRNA_H-elongata_contig56340.13080.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2121bp|location=Sequence derived from alignment at H-elongata_contig56340:761..2881- (Himanthalia elongata Himel1 dioecious)
CCGCTACTACCAGAGCTGGTGATGGGAGTAATGCTTGGCGTGTCCCGGAG CATCCCGCGAGCTCATGATTCCATGAAGCGCGGCGAATGGGCGAAGAAGG ACTTCCGCGGGTGCTCCCTTAGAGGGAAGGTGCTGGGCATCGTGGGATTC GGCTCTGTTGGTCGAGATGTGAGGAAACATGTTGATAGTCGCATGTCAAT ATAAGCATTTTGATAGCACTTCTTTATTTTAAGAGAGCTGCGGGCTTTGT AGTTAGTTGCCTTGTCCTACGCCTGTCTGCTGTTTTATGAAAATATTTGA CGTTAACATCGAAGCTTTCTGTCTCCAACAGCCGAGTGCGTCTACAGTAC CTCTTGTTCGTTGCGCTCGAGAATCGTAAGCCTGTGACTGCTTGACCAAA ACCCTTGCTAAAACTAACTCTGCGTGCAAGAGGAAATATCAATAGTTTTA ACGCCTACCCGCTGGACAACCAAGCCTCACACACTTGAATGCCTTTTATT ATAGCTCAGGCTTTACTTAATATGGCCGACAAACTCATGGTACGGTATGG CACAGTGAGCGCTGCCGAACGACGCCCCCGGCCTTTCCTCAATAATCTTC AGCTGGCCAGGGTCGCAATCGCGTTCGGCATGGTCGTCTTGGTCGCTGCA CCGCTATCGAAGTCATATGCCGCCCCGTCCGTCAGTGTCAGCCGAGAGAC CGAGAGCGACCCGTCCTGGTTGAAACGGAGGATGCTAGAGAGCGAGATCG GGATGACCGAGCCTCCGCAGCGCGTGCCCCTGAAGGATCTTCTCTCGAAG AGCGACTTCTTAAGCTTGCACGTCCCGCTAGCTCCGGGCACCAGTGGCAT GATCGGCACGAGGGAGCTGGCGCTGATGAAACCGTCCGCTATGGTGATCA ACGCGGCAAGGGGTGGCGTGGTGGACGAACAAGGTACCGAGCCGCTGGCT GCCTGGCCTGGCCCCCATTAGATAGCAAATGCCGTGATGTTTGTTTCTCA ATTTTAGACCTTTCGATTGATGAAAAAATAATAGATTTAGATTCTCCGGG ATGTTTTTTTTAACGCGGAGCATGGCCGTATCGGGGTCGAGGAATATAGA GAAATGGTGGTACCTCATCACACACATTTATCATTAATATACCGGTATTT GATCCTTACTTTAATAGTACAAGGATCTCGTAGTTTGTGCATACTGTACT TCGTCTGTCTATTTTGCCTTTCATCCCGAAATAACTGTATACCGGTAGCA AATAACTTATCAATATGTTGTCGTGGCCGTCCAGAATACCATGCTCTTCT GATCAGTCACATATCCATAACAGCTCTGCTGAGCGCGCTGGAAAGAGGAC GCTTGGGGGGCGCGGCCTTAGACGTCTTTTCTTCGGAAAAAGTACCTCTC GAGGATCATATCGTCAGCCTTTGCAGGTGAATCCAATCAGTGTCTACCGT GTGGCTGGAGCTGGGCTCTAAGCGACACGAACGTGCCGTTTATCGCCGTG GCGGTCATCGCCAAAAACGAAACACTGAAATTAGTGCTATAATAGTGCTA TAATAGTGCTATACTAGTATTATTAACTCAAATTTTCATTATCCGTCGTC GATCCACCCGCGTCCTCGTTCTTGCCCCTTTCTTGGCACAAGTAGCCTGC CGAACGTCATTTGTACGCCCCACATCGGAGGATCTACAGTGGAAGCTGGA GAGCGAGTCTTGGTGGAAGTGTGCGGCGCCGTGTTGGAAGCGCTCCGGGG AACTCTTTCGCGGGACCGCATCGTGAATGGAAATCCCGAAACAGGCGTGC GTCACGAGAGGTTGTCATCATGGGTACAATAATCTAGCCGGGCTTCATTA GAAATAATTCAGTGCAGTGCAGCGCAGTTGTCTCTAGAGCTACTAATAGT ATTAGTACCGTACCCGACGAGGGGCATGGCCGCTGTCTGCTGCGATGTAG TGTAGTGTAAAATATTCCCGATTTCTACGGTATCCTCACGTTTTAGTAGT CATTTTATTATGCTGCTTTGCTTGAAACGACTGAAGATAGGTAACCCGCA TCCGCCCATCTAACTCTCTTCGGAAGATATTTGAAGCAGTACTGTCATTG GTACGATATCTCCATCCTGTG
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Coding sequence (CDS) from alignment at H-elongata_contig56340:761..2881-

>mRNA_H-elongata_contig56340.13080.1 ID=mRNA_H-elongata_contig56340.13080.1|Name=mRNA_H-elongata_contig56340.13080.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1536bp|location=Sequence derived from alignment at H-elongata_contig56340:761..2881- (Himanthalia elongata Himel1 dioecious)
ATGGGAGTAATGCTTGGCGTGTCCCGGAGCATCCCGCGAGCTCATGATTC
CATGAAGCGCGGCGAATGGGCGAAGAAGGACTTCCGCGGGTGCTCCCTTA
GAGGGAAGGTGCTGGGCATCGTGGGATTCGGCTCTGTTGGTCGAGATATG
GGAGTAATGCTTGGCGTGTCCCGGAGCATCCCGCGAGCTCATGATTCCAT
GAAGCGCGGCGAATGGGCGAAGAAGGACTTCCGCGGGTGCTCCCTTAGAG
GGAAGGTGCTGGGCATCGTGGGATTCGGCTCTGTTGGTCGAGATCTGGCC
AGGGTCGCAATCGCGTTCGGCATGGTCGTCTTGGTCGCTGCACCGCTATC
GAAGTCATATGCCGCCCCGTCCGTCAGTGTCAGCCGAGAGACCGAGAGCG
ACCCGTCCTGGTTGAAACGGAGGATGCTAGAGAGCGAGATCGGGATGACC
GAGCCTCCGCAGCGCGTGCCCCTGAAGGATCTTCTCTCGAAGAGCGACTT
CTTAAGCTTGCACGTCCCGCTAGCTCCGGGCACCAGTGGCATGATCGGCA
CGAGGGAGCTGGCGCTGATGAAACCGTCCGCTATGGTGATCAACGCGGCA
AGGGGTGGCGTGGTGGACGAACAAGCTGGCCAGGGTCGCAATCGCGTTCG
GCATGGTCGTCTTGGTCGCTGCACCGCTATCGAAGTCATATGCCGCCCCG
TCCGTCAGTGTCAGCCGAGAGACCGAGAGCGACCCGTCCTGGTTGAAACG
GAGGATGCTAGAGAGCGAGATCGGGATGACCGAGCCTCCGCAGCGCGTGC
CCCTGAAGGATCTTCTCTCGAAGAGCGACTTCTTAAGCTTGCACGTCCCG
CTAGCTCCGGGCACCAGTGGCATGATCGGCACGAGGGAGCTGGCGCTGAT
GAAACCGTCCGCTATGGTGATCAACGCGGCAAGGGGTGGCGTGGTGGACG
AACAAGCTCTGCTGAGCGCGCTGGAAAGAGGACGCTTGGGGGGCGCGGCC
TTAGACGTCTTTTCTTCGGAAAAAGTACCTCTCGAGGATCATATCGTCAG
CCTTTGCAGCTCTGCTGAGCGCGCTGGAAAGAGGACGCTTGGGGGGCGCG
GCCTTAGACGTCTTTTCTTCGGAAAAAGTACCTCTCGAGGATCATATCGT
CAGCCTTTGCAGCCTGCCGAACGTCATTTGTACGCCCCACATCGGAGGAT
CTACAGTGGAAGCTGGAGAGCGAGTCTTGGTGGAAGTGTGCGGCGCCGTG
TTGGAAGCGCTCCGGGGAACTCTTTCGCGGGACCGCATCGTGAATGGAAA
TCCCGAAACAGGCGTGCGTCACGAGAGGTTGTCATCATGGGTACAATAAC
CTGCCGAACGTCATTTGTACGCCCCACATCGGAGGATCTACAGTGGAAGC
TGGAGAGCGAGTCTTGGTGGAAGTGTGCGGCGCCGTGTTGGAAGCGCTCC
GGGGAACTCTTTCGCGGGACCGCATCGTGAATGGAAATCCCGAAACAGGC
GTGCGTCACGAGAGGTTGTCATCATGGGTACAATAA
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