prot_H-elongata_contig5623.13069.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5623.13069.1
Unique Nameprot_H-elongata_contig5623.13069.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length1301
Homology
BLAST of mRNA_H-elongata_contig5623.13069.1 vs. uniprot
Match: A0A6H5KFG5_9PHAE (C3H1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFG5_9PHAE)

HSP 1 Score: 728 bits (1880), Expect = 2.030e-233
Identity = 548/1264 (43.35%), Postives = 686/1264 (54.27%), Query Frame = 0
Query:  108 SGLLLAMALAAGSP--GDEIFTRDASTIEDYILLMSDESVAQDKEEEMAGCEPAE-----DAPIQRQ--PGLSLSEALDREEVASSRPPRPANLLSLAALVRPLKAGPRVTGRNSQAVFSLGKRKGKEKAQIPSAQSGGASGTEAAVYVG---GRGRTATWRGAKRCRMDPNAIMCPFELNGVCNDDDCRYQHTENYLPLPDSPPLSARDSPVTVSGGTDRGKGPLMETEVAATAAASVPARAPLSVSEPPARVGSRISAASQWKLPAIDFEVGTDVDGGGRRRKVAGGKHQRPSGEGEVLAAESVSGTKRPRSSGGESPAVEAEAGAKET------------GDMDGGDGIGVVGPGQGSSSEGTIEEGEEFLPLETESTGPSNGVGSGDSNGNAFASEVATDGTAALPGGTSPAALAKMFARAAVGA-STGXXXXXXXXSGGRQHGR---YYEKLGND-VPAAAANALTEEQVNALESRLEEDSCADVEGWLLVAIHRLPRAGNSARAVLNTIGAVARGPDGPLGNADDAVLKPALRALVQGLERG---QAESLWILYLKLFAFLPGKGDEALGMAEHALENYPTSRRIWRLYRSMLRTSWRRSLSDEIQTYCRHLEMVLKLGPLAA-ADAAPAVRASANANASLDDDPEATVVTAKPKASSVGETSDSGAKNDGRDHATIGMVAYLVLERCSVLAEAGYLLQAAADALDALG---EGKVLRGWDTATDDEAGDKSLLRAPSGPVQSSGSERHPSSGSGIGTGTNDSGGRSVHG----------RIPEGVAEVLRKAPRDTRCLLWLTVLHLLVMGIFPRPVLGLVD----GNGGDQDCDSHE---ASLLLWPKEWLLPESAAGIRLSANAELRDVSTNTFMSALQDASLLPAEDGRGGGWAPPMRVRDALLPSAAEAQAARAGGMAPEPSALTGPSLALALNWLAFCCRRGRGRDNGVRSVALACCRRFQLSRPDHPSTLEHLLLEHDVSRSRSLADAYHEISIAFNEGGAATEALRER----------NEEPARPGDGGSRNVAFLSPSVHQLEALYCFLRFAEVRLRAMASKGQVEVSPDPSPSANGPVDIECNILRETLVGVWAPTRASNAHKEREGKNLSDRSLL------DDGESLRLALEGAKASLFQWANCASRGGCANEDQGAGRQLSTIFLALWVLNGPSEATHILDHLLRAESFAMMPPEQRRLAWLQRLEAAMVISDEQVRYTTAAR-DPMQGVREVVLRALADPRTDFR 1301
            S LLLAMA+  G    GD++ TRDA TI +YI LMS E +    EE      P E      A I+R+  PGLSL+EALD+ E  ++RP R  NLL+LAA +RP+ +                                               G    A   GAKR R+D NAIMCPFELNGVCNDDDCRYQH + YLP     PL+   S   +S        P   +     + + VP   PL+ +   AR   R SA  Q +LPAIDF       G  +R  VA     R +G   V+   S   +++P S  G      AE G  +             G+++  D    V  G+             FL L TE    + G G             A+ GTAA P   SPAALAK FA AA GA ++G        +GG   GR   YY + G+     AA+ AL ++Q++ALE++L E +  DVEGWLL+A+H+LPRAG SA+AVLNTI  VA G  GP+G+ D A +K ALR  V+ LER    QAE LW+LYL+LFAFLPGK D+ALGMAE+ALE +PTSRRIWRLY SML+TS   SL +++  Y R +E +L L P AA   A+P   +                                         A + M+ YLVLERCS+LAEAGY LQAAA+ LD+LG   EG+ L GWD    D  G ++LLR      +  G ER    G G G  T   GG +  G          R+P GVA  L+ APRD+RC+LWLT LHLLVMG+FPR  L L +    G GG  D  +     A+LLLWP EWL P+S+A +RLSA+ +L+D +  TFM+AL D  LLP    +G  WAP ++ RDALL SAAEA+AARAGGMAP+ SAL GP L LALNWLAFC RRGR      R +A ACCRRFQLSRPD P+ LEH LLEH VS++R+L D YHEIS AF+  G A  ALRER          N   AR  D  S N+    PS  +++A+Y FLRF E RL A  S+ +     D      G ++    +LR+ LVG+W    +              RS        + GES+R ALEGAKASLF+WA+  S GGC        RQLSTI  +LWVL G S A   LDH+L AESF+ +  E++RLAWLQRLEAA+++S +Q R   A+  D MQGVREV LRALAD RT+ R
Sbjct:   60 SNLLLAMAIGGGMVPGGDDLLTRDAGTIAEYIRLMSFEMLG---EESQGRDRPVERWHQVGASIRRRLVPGLSLTEALDKAEATAARPARLPNLLALAAAIRPVDSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDEPRAEAPGAKRRRVDANAIMCPFELNGVCNDDDCRYQHLDVYLP-----PLNPGTSSAPISASAAANVQPAKSSASGPGSTSPVPG--PLAAAA--ARTDERASALGQHRLPAIDFT------GAAKRDAVA---RARENGRRGVVKPSS---SRQPTSETGGVTPTAAEGGTADQXXXXXXXXXXXXGELEEAD---AVDSGEXXXXXXXXXXXXXFLALPTERAENNGGDGG-----------EASSGTAAAPEQASPAALAKAFALAASGALASGGRGNVVRGAGGSGVGREERYYLEGGDGKTQGAASAALPDDQLSALEAKLNEGASCDVEGWLLLAMHQLPRAGGSAKAVLNTISDVACGASGPMGSVDQAAVKSALRTFVRPLERADGAQAEVLWLLYLRLFAFLPGKSDDALGMAEYALEKFPTSRRIWRLYHSMLQTSPGWSLPEDVSCYRRQIEALLLLQPRAADMRASPQDGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAEVKMIVYLVLERCSLLAEAGYKLQAAAEVLDSLGALAEGQPLWGWDAR--DGQGRRTLLRT----FEGGGHERE---GEGNGA-TRXXGGANAGGSTEASDDNGQRLPAGVAAALKHAPRDSRCVLWLTALHLLVMGVFPRHALTLAENDGGGLGGSNDTTAAGGDLAALLLWPTEWLSPKSSAILRLSASPDLQDATLKTFMTALSDVGLLPPPRSQGC-WAPAIKDRDALLSSAAEAKAARAGGMAPDASALEGPPLVLALNWLAFCLRRGRVDARQGRMMAFACCRRFQLSRPDQPALLEHFLLEHAVSKTRTLGDTYHEISRAFDADGVAAGALRERRDGEGKSASLNPAGARRRDEQSVNLV-PPPSGERIQAVYAFLRFVESRLEAARSESESANDAD-----RGALEDARRVLRDALVGMWTGVSSXXXXXXXXXXXXXARSESYRWLEEEGGESVRQALEGAKASLFRWADGGS-GGCDAPGGNGERQLSTIVFSLWVLGGASAAIGSLDHILSAESFSGVSAERKRLAWLQRLEAAIILSTQQRRKQQASGVDAMQGVREVALRALADHRTERR 1267          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5623.13069.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFG5_9PHAE2.030e-23343.35C3H1-type domain-containing protein n=2 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019607Putative zinc-finger domainPFAMPF10650zf-C3H1coord: 270..288
e-value: 5.7E-9
score: 35.5
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 265..291
score: 10.08

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5623contigH-elongata_contig5623:1984..10083 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5623.13069.1mRNA_H-elongata_contig5623.13069.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5623 1984..10083 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5623.13069.1 ID=prot_H-elongata_contig5623.13069.1|Name=mRNA_H-elongata_contig5623.13069.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1301bp
SDPRDQVADGDPEDYEPSGIPSPNHPALDPTTSVESAPQPQQQYWQQQQQ
QRDGKSATLETVAPPLTPKRTVSTCSSGGRKVSTSSRAGGVGAGTTAAAA
AASPDGASGLLLAMALAAGSPGDEIFTRDASTIEDYILLMSDESVAQDKE
EEMAGCEPAEDAPIQRQPGLSLSEALDREEVASSRPPRPANLLSLAALVR
PLKAGPRVTGRNSQAVFSLGKRKGKEKAQIPSAQSGGASGTEAAVYVGGR
GRTATWRGAKRCRMDPNAIMCPFELNGVCNDDDCRYQHTENYLPLPDSPP
LSARDSPVTVSGGTDRGKGPLMETEVAATAAASVPARAPLSVSEPPARVG
SRISAASQWKLPAIDFEVGTDVDGGGRRRKVAGGKHQRPSGEGEVLAAES
VSGTKRPRSSGGESPAVEAEAGAKETGDMDGGDGIGVVGPGQGSSSEGTI
EEGEEFLPLETESTGPSNGVGSGDSNGNAFASEVATDGTAALPGGTSPAA
LAKMFARAAVGASTGTGGGGRGRSGGRQHGRYYEKLGNDVPAAAANALTE
EQVNALESRLEEDSCADVEGWLLVAIHRLPRAGNSARAVLNTIGAVARGP
DGPLGNADDAVLKPALRALVQGLERGQAESLWILYLKLFAFLPGKGDEAL
GMAEHALENYPTSRRIWRLYRSMLRTSWRRSLSDEIQTYCRHLEMVLKLG
PLAAADAAPAVRASANANASLDDDPEATVVTAKPKASSVGETSDSGAKND
GRDHATIGMVAYLVLERCSVLAEAGYLLQAAADALDALGEGKVLRGWDTA
TDDEAGDKSLLRAPSGPVQSSGSERHPSSGSGIGTGTNDSGGRSVHGRIP
EGVAEVLRKAPRDTRCLLWLTVLHLLVMGIFPRPVLGLVDGNGGDQDCDS
HEASLLLWPKEWLLPESAAGIRLSANAELRDVSTNTFMSALQDASLLPAE
DGRGGGWAPPMRVRDALLPSAAEAQAARAGGMAPEPSALTGPSLALALNW
LAFCCRRGRGRDNGVRSVALACCRRFQLSRPDHPSTLEHLLLEHDVSRSR
SLADAYHEISIAFNEGGAATEALRERNEEPARPGDGGSRNVAFLSPSVHQ
LEALYCFLRFAEVRLRAMASKGQVEVSPDPSPSANGPVDIECNILRETLV
GVWAPTRASNAHKEREGKNLSDRSLLDDGESLRLALEGAKASLFQWANCA
SRGGCANEDQGAGRQLSTIFLALWVLNGPSEATHILDHLLRAESFAMMPP
EQRRLAWLQRLEAAMVISDEQVRYTTAARDPMQGVREVVLRALADPRTDF
R
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019607Putative_zinc-finger_domain
IPR000571Znf_CCCH