mRNA_H-elongata_contig5621.13066.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5621.13066.1 vs. uniprot
Match: A0A6H5JV14_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV14_9PHAE) HSP 1 Score: 130 bits (328), Expect = 1.870e-34 Identity = 69/174 (39.66%), Postives = 101/174 (58.05%), Query Frame = 1
Query: 1 PWSSLLICVPTKCGGIQIRVNHKKLNTMSEILQIVIPPVDEALDTL-GGSMF*ILDLFSGFTKFMLNPNTLQLTAFCTQNKLYGNLRIAQGATIDPAWFGSVVRLFRIGLGRIQIFLDDAIGSDDTLLNHMATLANFIPRLSLHKLKLSPIKSRVEAARVNFLGHVIFSGGVRP 519
P+SS L+ +P K GG+ I VN++KLN + + Q+ IP VD+ LD L G ++ + D+ S F + ++ T+ LTAF T + L+ L++ QG++ P WF VV L + +LDD I DDT H+ T+ RL H LKL+P K+ + A +FLGH I GVRP
Sbjct: 45 PYSSPLVVIPKKSGGVHITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDMKSSFHQITVHRETIHLTAFVTSSGLFEWLKMPQGSSAAPGWFCKVVNEVIKNLRGVASYLDDLIVFDDTPATHVGTIRALFERLRTHNLKLTPPKATIGATEADFLGHTISPDGVRP 218
BLAST of mRNA_H-elongata_contig5621.13066.1 vs. uniprot
Match: A0A6H5JFL9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL9_9PHAE) HSP 1 Score: 132 bits (332), Expect = 1.410e-32 Identity = 69/174 (39.66%), Postives = 104/174 (59.77%), Query Frame = 1
Query: 1 PWSSLLICVPTKCGGIQIRVNHKKLNTMSEILQIVIPPVDEALDTL-GGSMF*ILDLFSGFTKFMLNPNTLQLTAFCTQNKLYGNLRIAQGATIDPAWFGSVVRLFRIGLGRIQIFLDDAIGSDDTLLNHMATLANFIPRLSLHKLKLSPIKSRVEAARVNFLGHVIFSGGVRP 519
P+SS L+ +P K GG++I VN++KLN + + Q+ IP VD+ LD L G ++ + D+ S F + ++ +T+ LTAF T ++L+ L++ QG++ P WF VV L + +LDD I DDT H+ T+ RL H LKL+P K+ + A +FLGH I GVRP
Sbjct: 202 PYSSPLVVIPKKSGGVRITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDMKSSFHQITVHRDTIPLTAFVTSSELFEWLKMPQGSSAAPGWFCKVVNEVIKNLHGVASYLDDLIVFDDTPATHVGTMRALFERLRTHNLKLTPPKATIGATEADFLGHTISPDGVRP 375
BLAST of mRNA_H-elongata_contig5621.13066.1 vs. uniprot
Match: A0A6H5JR23_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR23_9PHAE) HSP 1 Score: 126 bits (317), Expect = 9.770e-32 Identity = 70/174 (40.23%), Postives = 98/174 (56.32%), Query Frame = 1
Query: 1 PWSSLLICVPTKCGGIQIRVNHKKLNTMSEILQIVIPPVDEALDTL-GGSMF*ILDLFSGFTKFMLNPNTLQLTAFCTQNKLYGNLRIAQGATIDPAWFGSVVRLFRIGLGRIQIFLDDAIGSDDTLLNHMATLANFIPRLSLHKLKLSPIKSRVEAARVNFLGHVIFSGGVRP 519
P+SS L+ +P K GG++I VN+ KLN + + Q+ IP VD+ LD L G + D+ S F + ++ +T+ LTAF T + L+ L + QG + P WF VV L + +LDD I DDT H+ T+ RL H LKL+P K+ V A +FLGH I GVRP
Sbjct: 61 PYSSPLVVIPKKSGGVRITVNYCKLNKLCALSQLPIPRVDDTLDKLLKGQFHSLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLEMPQGRSAAPGWFCKVVNEVIENLRGVASYLDDLIVFDDTPATHVGTMRALFERLRTHNLKLTPPKATVGATEADFLGHTISPDGVRP 234
BLAST of mRNA_H-elongata_contig5621.13066.1 vs. uniprot
Match: A0A6H5JUZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ4_9PHAE) HSP 1 Score: 129 bits (324), Expect = 1.790e-31 Identity = 69/174 (39.66%), Postives = 103/174 (59.20%), Query Frame = 1
Query: 1 PWSSLLICVPTKCGGIQIRVNHKKLNTMSEILQIVIPPVDEALDTL-GGSMF*ILDLFSGFTKFMLNPNTLQLTAFCTQNKLYGNLRIAQGATIDPAWFGSVVRLFRIGLGRIQIFLDDAIGSDDTLLNHMATLANFIPRLSLHKLKLSPIKSRVEAARVNFLGHVIFSGGVRP 519
P+SS L+ +P K GG++I VN++KLN + + Q+ IP VD+ LD L G ++ + D+ S F + ++ +T+ LTAF T + L+ L++ QG++ P WF VV L + +LDD I DD +H+ T+ RL H LKL+P K+ V A +FLGH I GVRP
Sbjct: 307 PYSSPLVVIPKKSGGVRITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGSSAAPGWFCKVVNEVIKNLHGVASYLDDLIVFDDNPASHVDTMRALFERLRTHNLKLTPPKATVGATEADFLGHTISPDGVRP 480
BLAST of mRNA_H-elongata_contig5621.13066.1 vs. uniprot
Match: A0A6H5JB88_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB88_9PHAE) HSP 1 Score: 124 bits (311), Expect = 2.030e-31 Identity = 68/174 (39.08%), Postives = 101/174 (58.05%), Query Frame = 1
Query: 1 PWSSLLICVPTKCGGIQIRVNHKKLNTMSEILQIVIPPVDEALDTL-GGSMF*ILDLFSGFTKFMLNPNTLQLTAFCTQNKLYGNLRIAQGATIDPAWFGSVVRLFRIGLGRIQIFLDDAIGSDDTLLNHMATLANFIPRLSLHKLKLSPIKSRVEAARVNFLGHVIFSGGVRP 519
P+SS L+ +P K GG++I VN++KLN + + Q+ I VDE LD L G+++ + D+ S F + ++ +T+ LTAF T + L+ L++ QG+ P WF VV L + +L D I D T H+AT+ + RL H LKL+P K+ + A FLGH I GVRP
Sbjct: 45 PYSSPLVVIPKKSGGVRITVNYRKLNKLCALSQLPILRVDETLDKLLKGNIYSLFDIKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGSAAAPGWFFKVVNEVIKNLRGVASYLADLIVFDATPAAHVATIRSLFERLRTHSLKLTPPKATIGATEAEFLGHTISPDGVRP 218
BLAST of mRNA_H-elongata_contig5621.13066.1 vs. uniprot
Match: A0A6H5J9N0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N0_9PHAE) HSP 1 Score: 125 bits (315), Expect = 2.650e-30 Identity = 69/174 (39.66%), Postives = 101/174 (58.05%), Query Frame = 1
Query: 1 PWSSLLICVPTKCGGIQIRVNHKKLNTMSEILQIVIPPVDEALDTL-GGSMF*ILDLFSGFTKFMLNPNTLQLTAFCTQNKLYGNLRIAQGATIDPAWFGSVVRLFRIGLGRIQIFLDDAIGSDDTLLNHMATLANFIPRLSLHKLKLSPIKSRVEAARVNFLGHVIFSGGVRP 519
P+SS L+ +P K GG+ I VN +KLN + + Q+ IP VD+ LD L G + + D+ S F + ++ +T+ LTAF T + L+ L++ QG++ P WF VV L + +LDD I DDT H+ T+ RL H LKL+P K+ + A + +FLGH I GVRP
Sbjct: 375 PFSSPLVVIPKKSGGVHITVNCRKLNKLCALSQLPIPRVDDTLDKLLKGRIDSLFDMKSSFHQNTVHRHTIPLTAFVTSSGLFEWLKMPQGSSAAPGWFCKVVNEVIKNLHGVASYLDDLIVFDDTPATHVGTMRALFERLRTHNLKLTPPKATIGATKADFLGHTISPDGVRP 548
BLAST of mRNA_H-elongata_contig5621.13066.1 vs. uniprot
Match: A0A6H5K9N3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9N3_9PHAE) HSP 1 Score: 120 bits (301), Expect = 4.380e-30 Identity = 66/173 (38.15%), Postives = 97/173 (56.07%), Query Frame = 1
Query: 1 PWSSLLICVPTKCGGIQIRVNHKKLNTMSEILQIVIPPVDEALDTL-GGSMF*ILDLFSGFTKFMLNPNTLQLTAFCTQNKLYGNLRIAQGATIDPAWFGSVVRLFRIGLGRIQIFLDDAIGSDDTLLNHMATLANFIPRLSLHKLKLSPIKSRVEAARVNFLGHVIFSGGVR 516
P+SS L+ +P K GG++I VN KLN + Q+ IP VD+ LD L G ++ + D+ S F + M++ +T+ LT T + L+ L++ QG++ P WF V L + +LDD I DDT H+ T+ RL H LKL+P K+ + A +FLGH I GVR
Sbjct: 45 PYSSPLVVIPKKSGGVRITVNFSKLNKRCALSQLWIPRVDDTLDKLLRGRVYSLFDMKSSFHQIMVHRDTIPLTVSVTSSGLFEWLKMPQGSSAAPGWFCKAVDEVIKNLHGVASYLDDLIVVDDTPATHVGTMRALFERLRTHNLKLTPPKATIGATEADFLGHTISPDGVR 217
BLAST of mRNA_H-elongata_contig5621.13066.1 vs. uniprot
Match: A0A6H5JBV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV9_9PHAE) HSP 1 Score: 123 bits (309), Expect = 1.570e-29 Identity = 67/174 (38.51%), Postives = 100/174 (57.47%), Query Frame = 1
Query: 1 PWSSLLICVPTKCGGIQIRVNHKKLNTMSEILQIVIPPVDEALDTL-GGSMF*ILDLFSGFTKFMLNPNTLQLTAFCTQNKLYGNLRIAQGATIDPAWFGSVVRLFRIGLGRIQIFLDDAIGSDDTLLNHMATLANFIPRLSLHKLKLSPIKSRVEAARVNFLGHVIFSGGVRP 519
P+SS L+ +P K GG++ VN++KLN + + Q+ IP VD+ LD L G ++ I D+ S F + ++ +T+ LTAF T L+ L++ QG++ WF VV+ L + +LDD I D T H+ T+ RL H LKL+P K+ + A +FLGH I GVRP
Sbjct: 65 PYSSPLVVIPKKSGGVRTTVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSIFDMKSSFHQITVHRDTIPLTAFVTSFGLFAWLKMPQGSSAASGWFCKVVKEVIKNLRGVASYLDDLIVFDVTPATHVGTMRALFERLRAHNLKLTPPKATIGATEADFLGHTISPDGVRP 238
BLAST of mRNA_H-elongata_contig5621.13066.1 vs. uniprot
Match: A0A6H5JDP0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDP0_9PHAE) HSP 1 Score: 122 bits (306), Expect = 3.630e-29 Identity = 66/174 (37.93%), Postives = 101/174 (58.05%), Query Frame = 1
Query: 1 PWSSLLICVPTKCGGIQIRVNHKKLNTMSEILQIVIPPVDEALDTL-GGSMF*ILDLFSGFTKFMLNPNTLQLTAFCTQNKLYGNLRIAQGATIDPAWFGSVVRLFRIGLGRIQIFLDDAIGSDDTLLNHMATLANFIPRLSLHKLKLSPIKSRVEAARVNFLGHVIFSGGVRP 519
P+SS L+ +P K GGI+I VN++KLN + + Q+ IP VD+ D L G ++ + D+ S F + ++ +T+ LTAF T + L+ L++ QG++ P W VV L + +LDD I DDT H+ ++ RL + LKL+P K+ + A +FLGH I GVRP
Sbjct: 407 PYSSPLVVIPKKSGGIRITVNYRKLNKLCALSQLPIPRVDDTWDNLLKGRIYFLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGSSAAPGWLCKVVNEVIKKLRGVASYLDDLIVFDDTPATHVGSMRALFGRLRTYNLKLTPPKATIGATEADFLGHTISPDGVRP 580
BLAST of mRNA_H-elongata_contig5621.13066.1 vs. uniprot
Match: A0A6H5KWU8_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU8_9PHAE) HSP 1 Score: 117 bits (294), Expect = 6.500e-29 Identity = 63/174 (36.21%), Postives = 100/174 (57.47%), Query Frame = 1
Query: 1 PWSSLLICVPTKCGGIQIRVNHKKLNTMSEILQIVIPPVDEALDTL-GGSMF*ILDLFSGFTKFMLNPNTLQLTAFCTQNKLYGNLRIAQGATIDPAWFGSVVRLFRIGLGRIQIFLDDAIGSDDTLLNHMATLANFIPRLSLHKLKLSPIKSRVEAARVNFLGHVIFSGGVRP 519
P+SS L+ +P K GG++I VN++KLN + + Q+ IP VD+ LD L G ++ + ++ F + ++ +T+ LTAF T + L+ L++ QG++ P WF + + + R LDD I DDT H+ T+ RL H L+L+P K+ + +FLGH I GVRP
Sbjct: 61 PYSSPLVFIPKKSGGVRITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFEMKFSFHQITVHRDTIPLTAFVTSSGLFEWLKLPQGSSAAPGWFAKLST--KSSIIRRCYILDDLIVFDDTPATHVGTMRALFERLRTHNLELTPPKATIGVTEADFLGHTISPDGVRP 232 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5621.13066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5621.13066.1 >prot_H-elongata_contig5621.13066.1 ID=prot_H-elongata_contig5621.13066.1|Name=mRNA_H-elongata_contig5621.13066.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp MLNPNTLQLTAFCTQNKLYGNLRIAQGATIDPAWFGSVVRLFRIGLGRIQback to top mRNA from alignment at H-elongata_contig5621:4565..5083- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5621.13066.1 ID=mRNA_H-elongata_contig5621.13066.1|Name=mRNA_H-elongata_contig5621.13066.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=519bp|location=Sequence derived from alignment at H-elongata_contig5621:4565..5083- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5621:4565..5083- >mRNA_H-elongata_contig5621.13066.1 ID=mRNA_H-elongata_contig5621.13066.1|Name=mRNA_H-elongata_contig5621.13066.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig5621:4565..5083- (Himanthalia elongata Himel1 dioecious)back to top |