mRNA_H-elongata_contig116648.1306.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig116648.1306.1
Unique Name	mRNA_H-elongata_contig116648.1306.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig116648.1306.1 vs. uniprot
Match: D8LMB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB7_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 2.600e-39
Identity = 73/113 (64.60%), Postives = 87/113 (76.99%), Query Frame = 1

Query:    1 RDEFDRFGGRETPHVLRRGALIGGGEHAEDAIVELRRQLKIAKSGLVDLKALVRADVAWVQETVGTRMTRRAWESCCRWGFEKLAELMRRWEERSAAVAMAKWMRHREFKANK 339
            RDE+DRFGGRETP VLRR AL GGGE +  A+ +LR QL++ + GL+DL A VRADVAWVQETVG RM+RRA  SCC+WG EK+AEL  RWE RS   AM  W R+RE+ AN+
Sbjct:  494 RDEYDRFGGRETPSVLRRSALSGGGEKSWKAVEQLRHQLEVTECGLLDLNARVRADVAWVQETVGARMSRRARVSCCKWGSEKIAELTFRWERRSLDKAMGTWTRYREYMANR 606

[Close]

BLAST of mRNA_H-elongata_contig116648.1306.1 vs. uniprot
Match: A0A6H5K374_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K374_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.010e-8
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 1

Query:    1 RDEFDRFGGRETPHVLRRGALIGGGEHAEDAIVELRRQLKIAKSG 135
            RDE+DRFGGRETP VLRR AL GGGE +  A+ +LR QL++ + G
Sbjct:  490 RDEYDRFGGRETPSVLRRSALSGGGEMSWKAVEQLRHQLEVTEVG 534

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig116648.1306.1 vs. uniprot

BLAST of mRNA_H-elongata_contig116648.1306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LMB7_ECTSI	2.600e-39	64.60	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K374_9PHAE	2.010e-8	62.22	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig116648	contig	H-elongata_contig116648:315..1288 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	148.7
Seed ortholog evalue	1.7e-33
Seed eggNOG ortholog	2880.D8LMB7
Preferred name	WAC
KEGG ko	ko:K16743,ko:K19613
KEGG Pathway	ko04014,map04014
GOs	GO:0000075,GO:0000077,GO:0000323,GO:0000993,GO:0001098,GO:0001099,GO:0003008,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0005764,GO:0005773,GO:0006325,GO:0006355,GO:0006464,GO:0006513,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007610,GO:0007611,GO:0007612,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010390,GO:0010468,GO:0010506,GO:0010507,GO:0010508,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010647,GO:0016043,GO:0016239,GO:0016241,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0023051,GO:0023056,GO:0030162,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031331,GO:0031570,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032446,GO:0032501,GO:0032991,GO:0033523,GO:0033554,GO:0036211,GO:0042176,GO:0042177,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044783,GO:0044877,GO:0045786,GO:0045861,GO:0045893,GO:0045935,GO:0046958,GO:0046959,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0061136,GO:0065007,GO:0070013,GO:0070063,GO:0070647,GO:0071704,GO:0071840,GO:0071894,GO:0080090,GO:1901564,GO:1901799,GO:1902531,GO:1902533,GO:1902680,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903432,GO:1903506,GO:1903508,GO:1904263,GO:1990904,GO:2000058,GO:2000059,GO:2000112,GO:2001141
EggNOG free text desc.	mRNA splicing, via spliceosome
EggNOG OGs	COG5104@1,KOG0152@2759
COG Functional cat.	A
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03036
Hectar predicted targeting category	other localisation
Ec32 ortholog description	WW domain
Ec32 ortholog	Ec-05_002200.1
Exons	3
Model size	342
Cds size	342
Stop	1
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig116648.1306.1	prot_H-elongata_contig116648.1306.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig116648 315..1288 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929678.3876297-CDS-H-elongata_contig116648:314..443	1622929678.3876297-CDS-H-elongata_contig116648:314..443	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig116648 315..443 +
1691679116.35487-CDS-H-elongata_contig116648:314..443	1691679116.35487-CDS-H-elongata_contig116648:314..443	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig116648 315..443 +
1622929678.4022713-CDS-H-elongata_contig116648:745..885	1622929678.4022713-CDS-H-elongata_contig116648:745..885	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig116648 746..885 +
1691679116.3769271-CDS-H-elongata_contig116648:745..885	1691679116.3769271-CDS-H-elongata_contig116648:745..885	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig116648 746..885 +
1622929678.4152935-CDS-H-elongata_contig116648:1215..1288	1622929678.4152935-CDS-H-elongata_contig116648:1215..1288	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig116648 1216..1288 +
1691679116.3864784-CDS-H-elongata_contig116648:1215..1288	1691679116.3864784-CDS-H-elongata_contig116648:1215..1288	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig116648 1216..1288 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig116648:315..1288+
coding sequence from alignment at H-elongata_contig116648:315..1288+

protein sequence of mRNA_H-elongata_contig116648.1306.1

>prot_H-elongata_contig116648.1306.1 ID=prot_H-elongata_contig116648.1306.1|Name=mRNA_H-elongata_contig116648.1306.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
RDEFDRFGGRETPHVLRRGALIGGGEHAEDAIVELRRQLKIAKSGLVDLK
ALVRADVAWVQETVGTRMTRRAWESCCRWGFEKLAELMRRWEERSAAVAM
AKWMRHREFKANK*

mRNA from alignment at H-elongata_contig116648:315..1288+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig116648.1306.1 ID=mRNA_H-elongata_contig116648.1306.1|Name=mRNA_H-elongata_contig116648.1306.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=974bp|location=Sequence derived from alignment at H-elongata_contig116648:315..1288+ (Himanthalia elongata Himel1 dioecious)
CGGGACGAGTTTGATCGGTTCGGGGGTCGGGAGACGCCGCACGTTCTTCG
CCGAGGCGCTCTCATTGGGGGAGGCGAGCATGCCGAGGACGCGATAGTGG
AACTACGGCGTCAGTTGAAAATTGCTAAGGTTTTCATCTCATTTCTAGTC
GCGATTCTCGAGTGAACGCTAGAAAATAATTGTTGGCCTAAACTCTATAA
GCATGCTCCTCGTCAGCAGGGAAATGAGCAAACCCTTCTGTTCCGAACTG
GATGGCATTTCGGAATTATCTTGCGAGAAAATAGTGCAAAGGACTCACGA
GCTTACCCTGTGTAATCACGACACCATCCGCTGGTACGTTTTTAGAACGC
ACATATCAATAGTATGGTACTCTTTACTTGGCCCTGCACTTTGTGTCTCA
ACGTGCTGACAAAACGTCTGGTGGAGGACAGAGCGGGTTGGTGGATTTGA
AAGCCCTTGTACGAGCTGACGTCGCATGGGTGCAGGAGACAGTCGGCACC
AGAATGACACGTCGGGCTTGGGAGTCCTGCTGCAGATGGGGCTTCGAAAA
GCTCGCCGAGCTCATGCGCCGGTGCGAGGTTCGGCAGCATGTAAAACTTT
AGCATGTTGACGTGATGTAAGTGATGTTCAAAGGCCGTTGGGAGTCGTTG
CATATTGCAATGAAGATGCCCACGTTATACGTTGAATACAATTATTATGT
GGGATTCTGCTGGAGCAAAAGCGCGCGTATCCGTGTACTCGTGCTGATGG
ACGAATATATCACTTGATCACACCAAATTATAAGTTAAATACACGAGTAG
ATTGCCTTCACTGATTGCAAACAGTCCAGCACGCACCAAACACCACGTGT
AGCGCATGATCAATTATCAACGGTGAAATCAAGCGCGCCGGTGGTACCCA
GGTGGGAGGAGCGCTCGGCTGCCGTGGCTATGGCGAAGTGGATGCGACAT
CGCGAATTTAAAGCAAACAAGTGA

Coding sequence (CDS) from alignment at H-elongata_contig116648:315..1288+

>mRNA_H-elongata_contig116648.1306.1 ID=mRNA_H-elongata_contig116648.1306.1|Name=mRNA_H-elongata_contig116648.1306.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig116648:315..1288+ (Himanthalia elongata Himel1 dioecious)
CGGGACGAGTTTGATCGGTTCGGGGGTCGGGAGACGCCGCACGTTCTTCG
CCGAGGCGCTCTCATTGGGGGAGGCGAGCATGCCGAGGACGCGATAGTGG
AACTACGGCGTCAGTTGAAAATTGCTAAGCGGGACGAGTTTGATCGGTTC
GGGGGTCGGGAGACGCCGCACGTTCTTCGCCGAGGCGCTCTCATTGGGGG
AGGCGAGCATGCCGAGGACGCGATAGTGGAACTACGGCGTCAGTTGAAAA
TTGCTAAGAGCGGGTTGGTGGATTTGAAAGCCCTTGTACGAGCTGACGTC
GCATGGGTGCAGGAGACAGTCGGCACCAGAATGACACGTCGGGCTTGGGA
GTCCTGCTGCAGATGGGGCTTCGAAAAGCTCGCCGAGCTCATGCGCCGAG
CGGGTTGGTGGATTTGAAAGCCCTTGTACGAGCTGACGTCGCATGGGTGC
AGGAGACAGTCGGCACCAGAATGACACGTCGGGCTTGGGAGTCCTGCTGC
AGATGGGGCTTCGAAAAGCTCGCCGAGCTCATGCGCCGGTGGGAGGAGCG
CTCGGCTGCCGTGGCTATGGCGAAGTGGATGCGACATCGCGAATTTAAAG
CAAACAAGTGAGTGGGAGGAGCGCTCGGCTGCCGTGGCTATGGCGAAGTG
GATGCGACATCGCGAATTTAAAGCAAACAAGTGA