mRNA_H-elongata_contig116646.1305.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig116646.1305.1
Unique Name	mRNA_H-elongata_contig116646.1305.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig116646.1305.1 vs. uniprot
Match: D8LEP1_ECTSI (WD-repeat protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP1_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 4.570e-43
Identity = 137/179 (76.54%), Postives = 149/179 (83.24%), Query Frame = 1

Query:    1 QVWSTSSGRLMLSLRGHSSVITDLAVSPDNSMLVSSSEDRNLRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRESLITDDVIPIVLPHKNHAGNNIPVKCLSVSPAGNLIAAGCDDGAVRVWAYGDADDDAAWGSGKHNTRGAGRDKFGGGQVYRREAPQ 537
            +VWS +SGRLML LRGH+SVITD+ VSPDNSMLV          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   ++SL T+DV+PIVLPH N  G  IPV CLSVSPAGNLIAAGC DGAVRVWAYGD+DDDAAWG+GKHNTR  GRD  G G+VYR EAP+
Sbjct:  381 KVWSVTSGRLMLCLRGHASVITDMDVSPDNSMLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRGQDSLATEDVVPIVLPHTNEQGGMIPVMCLSVSPAGNLIAAGCSDGAVRVWAYGDSDDDAAWGTGKHNTRRTGRDTIGRGEVYRSEAPR 559

[Close]

BLAST of mRNA_H-elongata_contig116646.1305.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.850e-37
Identity = 138/204 (67.65%), Postives = 148/204 (72.55%), Query Frame = 1

Query:    1 QVWSTSSGRLMLSLRGHSSVITDLAVSPDNSMLVSSSEDRNLRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRE-------------------------SLITDDVIPIVLPHKNHAGNNIPVKCLSVSPAGNLIAAGCDDGAVRVWAYGDADDDAAWGSGKHNTRGAGRDKFGGGQVYRREAPQ 537
            +VWS +SGRLML LRGH+SVITD+ VSPDNSMLV          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +                          SL T+DV+PIVLPH N  G  IPV CLSVSPAGNLIAAGC DGAVRVWAYGD+DDDAAWG GKHNTR AGRD  G G+VYR EAP+
Sbjct:   66 KVWSVTSGRLMLCLRGHASVITDMDVSPDNSMLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRGQGRWGRARLGRGPCFIVLFLLASGSHGSLATEDVVPIVLPHTNEQGGMIPVMCLSVSPAGNLIAAGCIDGAVRVWAYGDSDDDAAWGIGKHNTRRAGRDTIGRGEVYRSEAPR 269

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig116646.1305.1 vs. uniprot

BLAST of mRNA_H-elongata_contig116646.1305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LEP1_ECTSI	4.570e-43	76.54	WD-repeat protein, putative n=1 Tax=Ectocarpus sil...	[more]
A0A6H5KTA2_9PHAE	1.850e-37	67.65	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig116646	contig	H-elongata_contig116646:356..1798 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	159.1
Seed ortholog evalue	3.3e-36
Seed eggNOG ortholog	2880.D8LEP1
KEGG ko	ko:K02606,ko:K11797,ko:K11798
KEGG Pathway	ko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG Module	M00284
GOs	GO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006357,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007346,GO:0008104,GO:0008150,GO:0008284,GO:0008286,GO:0008360,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010799,GO:0010800,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032868,GO:0032869,GO:0032870,GO:0033036,GO:0033043,GO:0033135,GO:0033138,GO:0033365,GO:0034097,GO:0034504,GO:0034613,GO:0038111,GO:0040008,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042393,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043567,GO:0043568,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045787,GO:0045840,GO:0045893,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0060255,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0070577,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090068,GO:0098760,GO:0098761,GO:0140030,GO:0140033,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
EggNOG free text desc.	regulation of cell shape
EggNOG OGs	COG2319@1,COG5141@1,KOG0644@2759,KOG0955@2759
COG Functional cat.	L
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko03032,ko04121
Hectar predicted targeting category	other localisation
Exons	3
Model size	948
Cds size	918
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig116646.1305.1	prot_H-elongata_contig116646.1305.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig116646 356..1768 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929678.287035-CDS-H-elongata_contig116646:355..453	1622929678.287035-CDS-H-elongata_contig116646:355..453	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig116646 356..453 -
1691679116.3047647-CDS-H-elongata_contig116646:355..453	1691679116.3047647-CDS-H-elongata_contig116646:355..453	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig116646 356..453 -
1622929678.311016-CDS-H-elongata_contig116646:516..1085	1622929678.311016-CDS-H-elongata_contig116646:516..1085	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig116646 517..1085 -
1691679116.3149817-CDS-H-elongata_contig116646:516..1085	1691679116.3149817-CDS-H-elongata_contig116646:516..1085	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig116646 517..1085 -
1622929678.3251417-CDS-H-elongata_contig116646:1517..1768	1622929678.3251417-CDS-H-elongata_contig116646:1517..1768	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig116646 1518..1768 -
1691679116.322795-CDS-H-elongata_contig116646:1517..1768	1691679116.322795-CDS-H-elongata_contig116646:1517..1768	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig116646 1518..1768 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929678.3394144-UTR-H-elongata_contig116646:1768..1798	1622929678.3394144-UTR-H-elongata_contig116646:1768..1798	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig116646 1769..1798 -
1691679116.3306413-UTR-H-elongata_contig116646:1768..1798	1691679116.3306413-UTR-H-elongata_contig116646:1768..1798	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig116646 1769..1798 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig116646:356..1798-
coding sequence from alignment at H-elongata_contig116646:356..1798-

protein sequence of mRNA_H-elongata_contig116646.1305.1

>prot_H-elongata_contig116646.1305.1 ID=prot_H-elongata_contig116646.1305.1|Name=mRNA_H-elongata_contig116646.1305.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=306bp
MLSLRGHSSVITDLAVSPDNSMLVSSSEDRNLRVWDPRTGASLAVLRGHE
APVNLVRFAPGDSVAMSASEDGTCRLWDLRDRESLITDDVIPIVLPHKNH
AGNNIPVKCLSVSPAGNLIAAGCDDGAVRVWAYGDADDDAAWGSGKHNTR
GAGRDKFGGGQVYRREAPQQQPRPAPPPPAAVEPPQGDISNGLAAAVTAA
AAWGVAAGNRGEAERDASVSGSAAGSAFTRAWERAGSMGLMVGALGGNDL
PGLQGGQEAAVAAAAATVGEGDVGRGREGGSGADGAGTAAKDKGGLEVRL
GTMMFG

mRNA from alignment at H-elongata_contig116646:356..1798-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig116646.1305.1 ID=mRNA_H-elongata_contig116646.1305.1|Name=mRNA_H-elongata_contig116646.1305.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1443bp|location=Sequence derived from alignment at H-elongata_contig116646:356..1798- (Himanthalia elongata Himel1 dioecious)
CAGGTCTGGTCCACCAGCTCGGGGCGCCTTATGCTGTCCCTGCGAGGTCA
CTCCAGCGTGATCACAGACCTGGCCGTCAGCCCCGATAACTCGATGCTCG
TGAGCTCCTCCGAGGACCGCAATCTTCGCGTCTGGGACCCGCGGACGGGG
GCATCGCTCGCCGTCCTGCGCGGCCACGAGGCACCGGTAAACCTCGTGCG
CTTTGCGCCGGGAGACAGCGTCGCCATGTCCGCTTCGGAGGACGGTACCT
GTCGACTTTGGGACCTAAGAGATCGAGAGAGGTGCGCGTTCGTTTGTGCT
GGGTGTCTTACGGCGCTTATCCCACTGCCCAATATTGGGCCGACTTGTGG
GTGTCTACTCGTTAAGATGATTCCCCAAATTAATCCTTGCAGATGGTAGT
CCCAAGCACTGGGAAATATGATGGGCGTCTTTTTTGCCCGCCCACCTTTT
TACGTATATAATCAAACGGGGATATCGTTGGAGGTTCGTCACGCATTTTG
ACGCGATGTGGAGGAGAGCGGACATGGTCGCTGTGGCTTTCCGTACCGGT
GGTTATGGTCGTTATATTCGACAAGCAGCGTGCTTTCTCTTAACTTGCGT
GACTTGGTGTGTGTATGTGTGTGTGTTCTCGTCTCGGGTCAATACGTCAT
TGCCCCGTCTACTGCCCCCTCCGATCTGAATCATCCCCCCCCTCCCCCAA
CCAAAACTCCCAGCCTCATCACGGACGACGTGATTCCGATCGTGCTTCCT
CACAAGAACCACGCGGGCAACAACATCCCCGTTAAGTGCCTCTCCGTGAG
TCCCGCCGGCAACCTTATCGCCGCCGGCTGCGACGATGGCGCCGTGCGGG
TGTGGGCCTACGGTGACGCCGACGATGATGCAGCATGGGGAAGCGGCAAG
CACAACACCCGCGGTGCCGGCAGAGATAAGTTCGGCGGTGGCCAGGTCTA
CAGGAGGGAGGCGCCACAGCAGCAGCCCCGCCCGGCACCTCCACCTCCTG
CCGCCGTGGAACCGCCCCAGGGGGATATTTCCAATGGGTTGGCAGCGGCA
GTGACAGCAGCAGCTGCATGGGGGGTCGCCGCCGGAAACCGGGGTGAAGC
AGAGCGCGACGCGAGCGTCTCGGGCTCGGCAGCGGGATCGGCTTTCACCA
GGGCGTGGGAGCGAGCCGGCAGTATGGGCCTGATGGTGGGAGCGCTCGGT
GGCAACGATTTGCCCGGTCTCCAGGGCGGGCAGGAGGCGGCGGTTGCTGC
TGCTGCTGCTACTGTTGGAGAGGGCGATGTCGGTGTCGAGGTTAGTGGTG
GTGGTGTTGAGGTAGAAGATAGGGGACGAGAAAGGCGGACGCGAGGGCGA
GGGAGGGAGGGGGGAAGCGGCGCTGACGGAGCTGGAACCGCGGCCAAGGA
TAAGGGGGGGCTTGAGGTTCGCCTGGGGACGATGATGTTCGGT

Coding sequence (CDS) from alignment at H-elongata_contig116646:356..1798-

>mRNA_H-elongata_contig116646.1305.1 ID=mRNA_H-elongata_contig116646.1305.1|Name=mRNA_H-elongata_contig116646.1305.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1836bp|location=Sequence derived from alignment at H-elongata_contig116646:356..1798- (Himanthalia elongata Himel1 dioecious)
ATGCTGTCCCTGCGAGGTCACTCCAGCGTGATCACAGACCTGGCCGTCAG
CCCCGATAACTCGATGCTCGTGAGCTCCTCCGAGGACCGCAATCTTCGCG
TCTGGGACCCGCGGACGGGGGCATCGCTCGCCGTCCTGCGCGGCCACGAG
GCACCGGTAAACCTCGTGCGCTTTGCGCCGGGAGACAGCGTCGCCATGTC
CGCTTCGGAGGACGGTACCTGTCGACTTTGGGACCTAAGAGATCGAGAGA
GATGCTGTCCCTGCGAGGTCACTCCAGCGTGATCACAGACCTGGCCGTCA
GCCCCGATAACTCGATGCTCGTGAGCTCCTCCGAGGACCGCAATCTTCGC
GTCTGGGACCCGCGGACGGGGGCATCGCTCGCCGTCCTGCGCGGCCACGA
GGCACCGGTAAACCTCGTGCGCTTTGCGCCGGGAGACAGCGTCGCCATGT
CCGCTTCGGAGGACGGTACCTGTCGACTTTGGGACCTAAGAGATCGAGAG
AGCCTCATCACGGACGACGTGATTCCGATCGTGCTTCCTCACAAGAACCA
CGCGGGCAACAACATCCCCGTTAAGTGCCTCTCCGTGAGTCCCGCCGGCA
ACCTTATCGCCGCCGGCTGCGACGATGGCGCCGTGCGGGTGTGGGCCTAC
GGTGACGCCGACGATGATGCAGCATGGGGAAGCGGCAAGCACAACACCCG
CGGTGCCGGCAGAGATAAGTTCGGCGGTGGCCAGGTCTACAGGAGGGAGG
CGCCACAGCAGCAGCCCCGCCCGGCACCTCCACCTCCTGCCGCCGTGGAA
CCGCCCCAGGGGGATATTTCCAATGGGTTGGCAGCGGCAGTGACAGCAGC
AGCTGCATGGGGGGTCGCCGCCGGAAACCGGGGTGAAGCAGAGCGCGACG
CGAGCGTCTCGGGCTCGGCAGCGGGATCGGCTTTCACCAGGGCGTGGGAG
CGAGCCGGCAGTATGGGCCTGATGGTGGGAGCGCTCGGTGGCAACGATTT
GCCCGGTCTCCAGGGCGGGCAGGAGGCGGCGGTTGCTGCTGCTGCTGCTA
CTGTTGGAGAGGGCGATGTCGCCTCATCACGGACGACGTGATTCCGATCG
TGCTTCCTCACAAGAACCACGCGGGCAACAACATCCCCGTTAAGTGCCTC
TCCGTGAGTCCCGCCGGCAACCTTATCGCCGCCGGCTGCGACGATGGCGC
CGTGCGGGTGTGGGCCTACGGTGACGCCGACGATGATGCAGCATGGGGAA
GCGGCAAGCACAACACCCGCGGTGCCGGCAGAGATAAGTTCGGCGGTGGC
CAGGTCTACAGGAGGGAGGCGCCACAGCAGCAGCCCCGCCCGGCACCTCC
ACCTCCTGCCGCCGTGGAACCGCCCCAGGGGGATATTTCCAATGGGTTGG
CAGCGGCAGTGACAGCAGCAGCTGCATGGGGGGTCGCCGCCGGAAACCGG
GGTGAAGCAGAGCGCGACGCGAGCGTCTCGGGCTCGGCAGCGGGATCGGC
TTTCACCAGGGCGTGGGAGCGAGCCGGCAGTATGGGCCTGATGGTGGGAG
CGCTCGGTGGCAACGATTTGCCCGGTCTCCAGGGCGGGCAGGAGGCGGCG
GTTGCTGCTGCTGCTGCTACTGTTGGAGAGGGCGATGTCGGGCGAGGGAG
GGAGGGGGGAAGCGGCGCTGACGGAGCTGGAACCGCGGCCAAGGATAAGG
GGGGGCTTGAGGTTCGCCTGGGGACGATGATGTTCGGTGGCGAGGGAGGG
AGGGGGGAAGCGGCGCTGACGGAGCTGGAACCGCGGCCAAGGATAAGGGG
GGGCTTGAGGTTCGCCTGGGGACGATGATGTTCGGT