mRNA_H-elongata_contig561.13049.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig561.13049.1 vs. uniprot
Match: D7G4R8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4R8_ECTSI) HSP 1 Score: 417 bits (1072), Expect = 5.990e-128 Identity = 313/748 (41.84%), Postives = 428/748 (57.22%), Query Frame = 3
Query: 186 RYNSLRVTFESRLASLAETIRISIQHTTNDDILRELNTTSITREFARDHAQSLIKRHLAAERGEYFHHLALKLADAEGKTNLYQKHNEELARSLEVVRADAALVERSTIKFANFRTEIQELRREYQKPLEEAIAECRQLKVELADCQRISASVTKERHEQAGHIRLQQAELKYAREREIEALSCNLSRQTSRLERDLGEQKSVNARLSSDLMHSQEILRDLTASNQQLELQVKSLRSDLTQREMRLEVAAANTKRSEAQFGDTIARMELLMEEEAKDSVTTIDKLRDRALEAKNRLSVEVERLTSANAQLIQALENAKAESDELQHRAEAAQKGKEASAVAAAAREDVLRTEVEQVRARADVMSQSLAEALREQSGLLAETANAKAAVEVLEAQTRSAELERERTTACEAKQGRASTTNCPSVHLWGGDSIQGVGAGMQKLLADKLEDASSHISQLRYMLRQEIRRRETAEANVSEAEGHLNSSRQELRELRNLAWKLEQIGRTSVVHVDKKNQTIKHLEDQRQVSGLELGGDIDGGENNRRHNGRGGSHSDEVFGVEREGPQEDDRNDQARRGRPKRFSGVHSASNDSNERAESTESTRPTCKGREEEGYQQTQRPRKQQSIFCWNNSREV-MTAISSLRADLREMVRQMNETKEDNKETARRFISGVATRVKRLTQTFQRASEDRPQVASRGQSFEALDAGAKDRKAVVRLQRVVQVVSATLYDTMGVCMPSTLRSEGVLCEDSEG 2426
RY+SL+ TFE+RLASLA TIR++++ T D +L +LN + TREFA HAQ+LIK++LA+ER + H LA++LA+ E + +HNEEL + V++ +AA ERS + +IQELRREYQ LE++ ECRQL+ EL+ +R S+ + ER EQA R Q L A +E+E +RL +L E+KS +LSS+L +Q+ L L +S+Q+L+ Q + L DLTQR+ RL++A AN ++SEA+F + + RME LME EAKD I LRD+AL AK RLS EVERL N L + + A+A EL+ R +AA K KE A AAAARE+ LR EQ R RAD MSQSLAEA+REQSGLL ETANAK A EVLEA++R+AE+E +LA+KL++AS+HIS+LR +LRQE+RRRE AEA VSEA+G+L SSRQEL ELR+LAWKLEQ+GR S H+D +Q + HLE + G+ G + GGE RR G RE ++ + GR G ++ G+EE G +R Q++ W + + + A++ LRA+LR + Q+ + K +N+E R VA RV+RL + EA AGA DRK+ L+RVV+ +S+ L D +GV MP+ L + E EG
Sbjct: 3 RYDSLKTTFEARLASLASTIRLAVESTQQDQVLVQLNASENTREFAPAHAQALIKQYLASERDTFSHDLAIRLAEVEAELLRCSRHNEELRSVVAVLKGEAARGERSRSEAIAVDADIQELRREYQIALEDSSVECRQLQAELSHSKRRSSVLKGERDEQAAQSRSLQQALADAGAKELEV---------TRLNEELREEKSRGVKLSSELAQAQQRLDALASSHQELKFQTQCLEKDLTQRDRRLQLADANKRKSEARFREAVTRMESLMEGEAKDCAAAIKNLRDKALLAKERLSTEVERLRGDNGHLRKGIAVAEARGSELELRLQAALKSKETDATAAAAREEALRATAEQARTRADTMSQSLAEAIREQSGLLTETANAKVAAEVLEAKSRAAEVE--------------------------------------NMLAEKLQEASTHISELRTVLRQEVRRREAAEAEVSEAQGYLKSSRQELGELRHLAWKLEQMGRNSFAHMDGNSQAVSHLEGELHARGV--AGTV-GGEEARR-------------GANRE--------EERKHGRSLPSGGWARGRSEGG--------------GKEEAGLLCARRRSVPQALSSWKGGQRLFLAALAGLRAELRCVNTQLGKAKAENEEFVRHCTERVAVRVERLERAXXXXXXXXXXXXXXXXXXEA--AGATDRKSADTLKRVVKGISSILLDRLGVAMPTCLDGGEDVGERGEG 663
BLAST of mRNA_H-elongata_contig561.13049.1 vs. uniprot
Match: A0A6H5KLZ7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLZ7_9PHAE) HSP 1 Score: 249 bits (635), Expect = 2.240e-65 Identity = 223/642 (34.74%), Postives = 316/642 (49.22%), Query Frame = 3
Query: 1068 RLSVEVERLTSANAQLIQALENAKAESDELQHRAEAAQKGKEASAVAAAAREDVLRTEVEQVRARADVMSQSLAEALREQSGLLAETANAKAAVEVLEAQTRSAELERERTTACEAKQGRASTTNCPSVHLWGGDSIQGVGAGMQKLLADKLEDASSHISQLRYMLRQEIRRRETAEANVSEAEGHLNSSRQELRELRNLAWKLEQIGRTSVVHVDKKNQTIKHLEDQRQVSGLELGGDIDGGENNRRHNGRGGSHSDEVFGVEREGPQEDDRNDQARRGRPKRFSGVHSASNDSNERAESTESTRPTCKGREEEGYQQTQRPRKQQSIFCWNNSREV-MTAISSLRADLREMVRQMNETKEDNKETARRFISGVATRVKRLTQTFQRASEDRPQVASRGQSFEALDAGAKDRKAVVRLQRVVQVVSATLYDTMGVCMPSTLRSEGVLCE-DSEGIERGLSELSSAVVKAVAKVEQDVKMILRKQLPLPLQIHLDSFKPTGRGGDRGDRESDTYNSIVALDGAVWGEKSKDDFNMLAELQKIEVENELQYLRAQVDDMSVKHSTAISERASVDHARLEEARKQAQEEAAQVERGHRSAVVALEAALEVERNRCQVLKARLDRQMREYQTAQTESGEKLLQTQ 2987
RLS EVERL N L++ + +A+A EL+ R +AA K KE A A AARE+ LR EQ RARAD MSQSLAE +LADKL++AS+HIS+LR +LRQE+RRRE AEA VSEA+G H+D +Q ++HLE + G+ G + GGE R G RE +ED R+ SG + R G+EE G +R R Q + W + + + A++ LRA+LR + Q+ + K +N+ R VA RV+RL + ++A + Q ++ Q+ EA AGA DRK+ L+RVV+ +S+ L D + V MP+ LR E E +ERGL EL++AV A++KV++ K + P Q H DS P G G Y + +DG VWGE+SKDDFNMLA+LQKIE E++LQ L+A++DDM+ K+S AI+++ +VD L E +++A++E A+ R H V ALE L E++ CQ L+ +L+RQ RE+Q A + ++LLQTQ
Sbjct: 299 RLSTEVERLRGENGHLMRGIADAEARGSELELRLQAALKSKEIDAAAGAAREEALRATAEQARARADTMSQSLAE-----------------------------------------------------------------------MLADKLQEASTHISELRTVLRQEVRRREAAEAEVSEAQGF--------------------------AHMDGNSQAVRHLEGELHARGV--AGTVGGGEAGR--------------GPLREEEREDGRS---------MLSGGRARG-------------RSEGGGKEEAGLLCARRRRVPQGLSSWKGGQRLFLAALAGLRAELRCVNTQLGKAKAENEVFVRHCTERVAVRVERLERAVRQAGQK--QAEAQRQASEAEAAGAIDRKSADTLKRVVKGISSILLDRLAVTMPTYLRGGEEAGERGQEMLERGLEELTAAVTDALSKVKERAKQAV------PAQPHGDSLAP-GNG---------RY-CMSTVDGMVWGERSKDDFNMLAQLQKIEAESKLQSLQARLDDMTEKYSRAIADQETVDSTPLREEQERAKQELARAARAHSGIVSALEVTLAAEKSHCQDLRLKLERQTREHQVALADVDQRLLQTQ 786 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig561.13049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig561.13049.1 >prot_H-elongata_contig561.13049.1 ID=prot_H-elongata_contig561.13049.1|Name=mRNA_H-elongata_contig561.13049.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=779bp MHSQEILRDLTASNQQLELQVKSLRSDLTQREMRLEVAAANTKRSEAQFGback to top mRNA from alignment at H-elongata_contig561:1567..10977- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig561.13049.1 ID=mRNA_H-elongata_contig561.13049.1|Name=mRNA_H-elongata_contig561.13049.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=9411bp|location=Sequence derived from alignment at H-elongata_contig561:1567..10977- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig561:1567..10977- >mRNA_H-elongata_contig561.13049.1 ID=mRNA_H-elongata_contig561.13049.1|Name=mRNA_H-elongata_contig561.13049.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4674bp|location=Sequence derived from alignment at H-elongata_contig561:1567..10977- (Himanthalia elongata Himel1 dioecious)back to top |