prot_H-elongata_contig561.13049.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig561.13049.1
Unique Nameprot_H-elongata_contig561.13049.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length779
Homology
BLAST of mRNA_H-elongata_contig561.13049.1 vs. uniprot
Match: D7G4R8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4R8_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 4.790e-79
Identity = 219/535 (40.93%), Postives = 294/535 (54.95%), Query Frame = 0
Query:    3 SQEILRDLTASNQQLELQVKSLRSDLTQREMRLEVAAANTKRSEAQFGDTIARMELLMEEEAKDSVTTIDKLRDRALEAKNRLSVEVERLTSANAQLIQALENAKAESDELQHRAEAAQKGKEASAVAAAAREDVLRTEVEQVRARADVMSQSLAEALREQSGLLAETANAKAAVEVLEAQTRSAELERERTTACEAKQGRASTTNCPSVHLWGGDSIQGVGAGMQKLLADKLEDASSHISQLRYMLRQEIRRRETAEANVSEAEGHLNSSRQELRELRNLAWKLEQIGRTSVVHVDKKNQTIKHLEDQRQVSGLELGGDIDGGENNRRHNGRGGSHSDEVFGVEREGPQEDDRNDQARRGRPKRFSGVHSASNDSNERAESTESTRPTCKGREEEGYQQTQRPRKQQSIFCWNNSREV-MTAISSLRADLREMVRQMNETKEDNKETARRFISGVATRVKRLTQTFQRASEDRPQVASRGQSFEALDAGAKDRKAVVRLQRVVQVVSATLYDTMGVCMPSTLRSEGVLCEDSEG 536
            +Q+ L  L +S+Q+L+ Q + L  DLTQR+ RL++A AN ++SEA+F + + RME LME EAKD    I  LRD+AL AK RLS EVERL   N  L + +  A+A   EL+ R +AA K KE  A AAAARE+ LR   EQ R RAD MSQSLAEA+REQSGLL ETANAK A EVLEA++R+AE+E                                       +LA+KL++AS+HIS+LR +LRQE+RRRE AEA VSEA+G+L SSRQEL ELR+LAWKLEQ+GR S  H+D  +Q + HLE +    G+   G + GGE  RR             G  RE        ++ + GR     G     ++                G+EE G    +R    Q++  W   + + + A++ LRA+LR +  Q+ + K +N+E  R     VA RV+RL +                   EA  AGA DRK+   L+RVV+ +S+ L D +GV MP+ L     + E  EG
Sbjct:  207 AQQRLDALASSHQELKFQTQCLEKDLTQRDRRLQLADANKRKSEARFREAVTRMESLMEGEAKDCAAAIKNLRDKALLAKERLSTEVERLRGDNGHLRKGIAVAEARGSELELRLQAALKSKETDATAAAAREEALRATAEQARTRADTMSQSLAEAIREQSGLLTETANAKVAAEVLEAKSRAAEVE--------------------------------------NMLAEKLQEASTHISELRTVLRQEVRRREAAEAEVSEAQGYLKSSRQELGELRHLAWKLEQMGRNSFAHMDGNSQAVSHLEGELHARGV--AGTV-GGEEARR-------------GANRE--------EERKHGRSLPSGGWARGRSEGG--------------GKEEAGLLCARRRSVPQALSSWKGGQRLFLAALAGLRAELRCVNTQLGKAKAENEEFVRHCTERVAVRVERLERAXXXXXXXXXXXXXXXXXXEA--AGATDRKSADTLKRVVKGISSILLDRLGVAMPTCLDGGEDVGERGEG 663          
BLAST of mRNA_H-elongata_contig561.13049.1 vs. uniprot
Match: A0A6H5KLZ7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLZ7_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 4.470e-67
Identity = 223/642 (34.74%), Postives = 316/642 (49.22%), Query Frame = 0
Query:   84 RLSVEVERLTSANAQLIQALENAKAESDELQHRAEAAQKGKEASAVAAAAREDVLRTEVEQVRARADVMSQSLAEALREQSGLLAETANAKAAVEVLEAQTRSAELERERTTACEAKQGRASTTNCPSVHLWGGDSIQGVGAGMQKLLADKLEDASSHISQLRYMLRQEIRRRETAEANVSEAEGHLNSSRQELRELRNLAWKLEQIGRTSVVHVDKKNQTIKHLEDQRQVSGLELGGDIDGGENNRRHNGRGGSHSDEVFGVEREGPQEDDRNDQARRGRPKRFSGVHSASNDSNERAESTESTRPTCKGREEEGYQQTQRPRKQQSIFCWNNSREV-MTAISSLRADLREMVRQMNETKEDNKETARRFISGVATRVKRLTQTFQRASEDRPQVASRGQSFEALDAGAKDRKAVVRLQRVVQVVSATLYDTMGVCMPSTLRSEGVLCE-DSEGIERGLSELSSAVVKAVAKVEQDVKMILRKQLPLPLQIHLDSFKPTGRGGDRGDRESDTYNSIVALDGAVWGEKSKDDFNMLAELQKIEVENELQYLRAQVDDMSVKHSTAISERASVDHARLEEARKQAQEEAAQVERGHRSAVVALEAALEVERNRCQVLKARLDRQMREYQTAQTESGEKLLQTQ 723
            RLS EVERL   N  L++ + +A+A   EL+ R +AA K KE  A A AARE+ LR   EQ RARAD MSQSLAE                                                                       +LADKL++AS+HIS+LR +LRQE+RRRE AEA VSEA+G                            H+D  +Q ++HLE +    G+   G + GGE  R              G  RE  +ED R+           SG  +               R    G+EE G    +R R  Q +  W   + + + A++ LRA+LR +  Q+ + K +N+   R     VA RV+RL +  ++A +   Q  ++ Q+ EA  AGA DRK+   L+RVV+ +S+ L D + V MP+ LR      E   E +ERGL EL++AV  A++KV++  K  +      P Q H DS  P G G          Y  +  +DG VWGE+SKDDFNMLA+LQKIE E++LQ L+A++DDM+ K+S AI+++ +VD   L E +++A++E A+  R H   V ALE  L  E++ CQ L+ +L+RQ RE+Q A  +  ++LLQTQ
Sbjct:  299 RLSTEVERLRGENGHLMRGIADAEARGSELELRLQAALKSKEIDAAAGAAREEALRATAEQARARADTMSQSLAE-----------------------------------------------------------------------MLADKLQEASTHISELRTVLRQEVRRREAAEAEVSEAQGF--------------------------AHMDGNSQAVRHLEGELHARGV--AGTVGGGEAGR--------------GPLREEEREDGRS---------MLSGGRARG-------------RSEGGGKEEAGLLCARRRRVPQGLSSWKGGQRLFLAALAGLRAELRCVNTQLGKAKAENEVFVRHCTERVAVRVERLERAVRQAGQK--QAEAQRQASEAEAAGAIDRKSADTLKRVVKGISSILLDRLAVTMPTYLRGGEEAGERGQEMLERGLEELTAAVTDALSKVKERAKQAV------PAQPHGDSLAP-GNG---------RY-CMSTVDGMVWGERSKDDFNMLAQLQKIEAESKLQSLQARLDDMTEKYSRAIADQETVDSTPLREEQERAKQELARAARAHSGIVSALEVTLAAEKSHCQDLRLKLERQTREHQVALADVDQRLLQTQ 786          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig561.13049.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4R8_ECTSI4.790e-7940.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLZ7_9PHAE4.470e-6734.74Reverse transcriptase domain-containing protein n=... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 425..452
NoneNo IPR availableCOILSCoilCoilcoord: 71..123
NoneNo IPR availableCOILSCoilCoilcoord: 7..34
NoneNo IPR availableCOILSCoilCoilcoord: 172..192
NoneNo IPR availableCOILSCoilCoilcoord: 648..675
NoneNo IPR availableCOILSCoilCoilcoord: 249..290
NoneNo IPR availableCOILSCoilCoilcoord: 680..714
NoneNo IPR availableCOILSCoilCoilcoord: 142..162

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig561contigH-elongata_contig561:1696..8708 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig561.13049.1mRNA_H-elongata_contig561.13049.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig561 1567..10977 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig561.13049.1 ID=prot_H-elongata_contig561.13049.1|Name=mRNA_H-elongata_contig561.13049.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=779bp
MHSQEILRDLTASNQQLELQVKSLRSDLTQREMRLEVAAANTKRSEAQFG
DTIARMELLMEEEAKDSVTTIDKLRDRALEAKNRLSVEVERLTSANAQLI
QALENAKAESDELQHRAEAAQKGKEASAVAAAAREDVLRTEVEQVRARAD
VMSQSLAEALREQSGLLAETANAKAAVEVLEAQTRSAELERERTTACEAK
QGRASTTNCPSVHLWGGDSIQGVGAGMQKLLADKLEDASSHISQLRYMLR
QEIRRRETAEANVSEAEGHLNSSRQELRELRNLAWKLEQIGRTSVVHVDK
KNQTIKHLEDQRQVSGLELGGDIDGGENNRRHNGRGGSHSDEVFGVEREG
PQEDDRNDQARRGRPKRFSGVHSASNDSNERAESTESTRPTCKGREEEGY
QQTQRPRKQQSIFCWNNSREVMTAISSLRADLREMVRQMNETKEDNKETA
RRFISGVATRVKRLTQTFQRASEDRPQVASRGQSFEALDAGAKDRKAVVR
LQRVVQVVSATLYDTMGVCMPSTLRSEGVLCEDSEGIERGLSELSSAVVK
AVAKVEQDVKMILRKQLPLPLQIHLDSFKPTGRGGDRGDRESDTYNSIVA
LDGAVWGEKSKDDFNMLAELQKIEVENELQYLRAQVDDMSVKHSTAISER
ASVDHARLEEARKQAQEEAAQVERGHRSAVVALEAALEVERNRCQVLKAR
LDRQMREYQTAQTESGEKLLQTQQDLDKVSQVRIQTPVGIPIVRDFKKAY
FSLVRRSRNFFELVSCFVLQMLTRASRW*
back to top