mRNA_H-elongata_contig56070.13043.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56070.13043.1
Unique NamemRNA_H-elongata_contig56070.13043.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56070.13043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56070contigH-elongata_contig56070:705..1145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size442
Cds size441
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930912.917908-CDS-H-elongata_contig56070:704..11451622930912.917908-CDS-H-elongata_contig56070:704..1145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56070 705..1145 +
1691679622.1232574-CDS-H-elongata_contig56070:704..11451691679622.1232574-CDS-H-elongata_contig56070:704..1145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56070 705..1145 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56070.13043.1prot_H-elongata_contig56070.13043.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56070 705..1145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56070.13043.1

>prot_H-elongata_contig56070.13043.1 ID=prot_H-elongata_contig56070.13043.1|Name=mRNA_H-elongata_contig56070.13043.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
ATTFPGGGAAGSAGARRLSISARSDPLSPKTRYTRTPRRTPLIGRLACVA
AWSGLEDDNPGHDSLDGGGAHRHRLFCIVWAGPWRKSWATRSSISIHMSS
ECCHCGHRGGEGWPNLPPIFSSASPHLTSPKIINLLFFIGHPSPAR*
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mRNA from alignment at H-elongata_contig56070:705..1145+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56070.13043.1 ID=mRNA_H-elongata_contig56070.13043.1|Name=mRNA_H-elongata_contig56070.13043.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=441bp|location=Sequence derived from alignment at H-elongata_contig56070:705..1145+ (Himanthalia elongata Himel1 dioecious)
GCGACGACATTTCCAGGAGGGGGTGCTGCTGGCTCGGCTGGTGCACGACG
CTTGAGTATCTCCGCTCGTTCTGATCCCCTCTCACCCAAGACGCGATACA
CGCGAACACCACGTCGAACTCCTTTGATTGGTCGACTGGCGTGCGTGGCA
GCTTGGAGTGGGCTCGAAGACGACAACCCTGGGCATGATTCACTTGACGG
AGGTGGAGCGCATCGACATCGATTATTTTGTATTGTTTGGGCAGGACCAT
GGCGGAAAAGTTGGGCAACCCGCTCAAGCATCTCAATTCACATGTCCTCG
GAATGCTGTCACTGCGGACACCGAGGGGGCGAGGGATGGCCGAATCTCCC
TCCTATATTCTCCTCGGCCTCACCTCACCTCACCTCACCTAAAATCATCA
ACCTCCTCTTCTTCATCGGCCATCCTTCGCCCGCTCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig56070:705..1145+

>mRNA_H-elongata_contig56070.13043.1 ID=mRNA_H-elongata_contig56070.13043.1|Name=mRNA_H-elongata_contig56070.13043.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig56070:705..1145+ (Himanthalia elongata Himel1 dioecious)
GCGACGACATTTCCAGGAGGGGGTGCTGCTGGCTCGGCTGGTGCACGACG
CTTGAGTATCTCCGCTCGTTCTGATCCCCTCTCACCCAAGACGCGATACA
CGCGAACACCACGTCGAACTCCTTTGATTGGTCGACTGGCGTGCGTGGCA
GCTTGGAGTGGGCTCGAAGACGACAACCCTGGGCATGATTCACTTGACGG
AGGTGGAGCGCATCGACATCGATTATTTTGTATTGTTTGGGCAGGACCAT
GGCGGAAAAGTTGGGCAACCCGCTCAAGCATCTCAATTCACATGTCCTCG
GAATGCTGTCACTGCGGACACCGAGGGGGCGAGGGATGGCCGAATCTCCC
TCCTATATTCTCCTCGGCCTCACCTCACCTCACCTCACCTAAAATCATCA
ACCTCCTCTTCTTCATCGGCCATCCTTCGCCCGCTCGGTGAGCGACGACA
TTTCCAGGAGGGGGTGCTGCTGGCTCGGCTGGTGCACGACGCTTGAGTAT
CTCCGCTCGTTCTGATCCCCTCTCACCCAAGACGCGATACACGCGAACAC
CACGTCGAACTCCTTTGATTGGTCGACTGGCGTGCGTGGCAGCTTGGAGT
GGGCTCGAAGACGACAACCCTGGGCATGATTCACTTGACGGAGGTGGAGC
GCATCGACATCGATTATTTTGTATTGTTTGGGCAGGACCATGGCGGAAAA
GTTGGGCAACCCGCTCAAGCATCTCAATTCACATGTCCTCGGAATGCTGT
CACTGCGGACACCGAGGGGGCGAGGGATGGCCGAATCTCCCTCCTATATT
CTCCTCGGCCTCACCTCACCTCACCTCACCTAAAATCATCAACCTCCTCT
TCTTCATCGGCCATCCTTCGCCCGCTCGGTGA
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