mRNA_H-elongata_contig116638.1304.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116638.1304.1
Unique NamemRNA_H-elongata_contig116638.1304.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig116638.1304.1 vs. uniprot
Match: D8LNB9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNB9_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 5.490e-38
Identity = 66/81 (81.48%), Postives = 69/81 (85.19%), Query Frame = 1
Query:    7 THKRYRKKGYTDEVLNRTIAICRPCHSAVHRAHDERTLAERFTTREELLEDEDIGRFVAWAQKQRVTKKDDASNNLLRYRR 249
            THKRYRKKGY+D VLNRTIAICRPCHSAVHRAHD   LAERFTT EELL DE IGRFVAWA+KQR T   D+ NNLLRYRR
Sbjct:  144 THKRYRKKGYSDAVLNRTIAICRPCHSAVHRAHDALALAERFTTVEELLADETIGRFVAWARKQRTTSVQDSRNNLLRYRR 224          
BLAST of mRNA_H-elongata_contig116638.1304.1 vs. uniprot
Match: A0A7R9U8X6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8X6_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.800e-23
Identity = 48/83 (57.83%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    1 RVTHKRYRKKGYTDEVLNRTIAICRPCHSAVHRAHDERTLAERFTTREELLEDEDIGRFVAWAQKQRVTKKDDASNNLLRYRR 249
            R TH++YRKKG T E LN T  ICRPCHSA+HR +D +TL   F T E+LL DE I +FV WA KQR T  D A N   +YRR
Sbjct:  124 RETHRKYRKKGMTQEELNLTTKICRPCHSAIHRTYDNQTLGAHFNTVEKLLGDEAILKFVKWAAKQRPTNTDMAMNGTAKYRR 206          
BLAST of mRNA_H-elongata_contig116638.1304.1 vs. uniprot
Match: A0A2K3DDI0_CHLRE (Uncharacterized protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DDI0_CHLRE)

HSP 1 Score: 93.6 bits (231), Expect = 9.990e-22
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    1 RVTHKRYRKKGYTDEVLNRTIAICRPCHSAVHRAHDERTLAERFTTREELLEDEDIGRFVAWAQKQRVTKKDDASNNLLRYRR 249
            R  H +Y++K  T E LNR + +CRPCHSA+HR +D +TLA  ++T E LL+ E + +F+ WAQKQ+VT ++D +N   RYRR
Sbjct:  146 RDVHAKYKRKALTAEELNRGVDVCRPCHSAIHRTYDNKTLAASYSTLEALLQSEPLQKFIRWAQKQKVTTREDMANPNFRYRR 228          
BLAST of mRNA_H-elongata_contig116638.1304.1 vs. uniprot
Match: A0A7S1U0G4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0G4_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.510e-21
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    1 RVTHKRYRKKGYTDEVLNRTIAICRPCHSAVHRAHDERTLAERFTTREELLEDEDIGRFVAWAQKQRVTKKDDASNNLLRYRR 249
            R TH++YRKKG + E LN    ICRPCHS +H+ +D   LA   +T E+LL+D+ I RFV WA KQR T  + A+NN  +YRR
Sbjct:   94 RETHRKYRKKGLSQEFLNTCTMICRPCHSHIHKTYDNERLAAELSTVEKLLDDDAILRFVKWAAKQRTTSTEMAANNRAKYRR 176          
BLAST of mRNA_H-elongata_contig116638.1304.1 vs. uniprot
Match: A0A150GCJ7_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GCJ7_GONPE)

HSP 1 Score: 89.0 bits (219), Expect = 4.780e-20
Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    1 RVTHKRYRKKGYTDEVLNRTIAICRPCHSAVHRAHDERTLAERFTTREELLEDEDIGRFVAWAQKQRVTKKDDASNNLLRYRR 249
            R  H +Y+KKG   E LN  I ICRPCHSA+HR +D +TLA  + T   LL  E + +FVAWA+KQ+VT   D +N   RYRR
Sbjct:  134 RDVHDKYKKKGLGTEQLNAGIDICRPCHSAIHRTYDNKTLAAHYYTLHRLLASEPLQKFVAWARKQKVTTASDITNPRFRYRR 216          
BLAST of mRNA_H-elongata_contig116638.1304.1 vs. uniprot
Match: A0A835WXC4_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WXC4_9CHLO)

HSP 1 Score: 87.0 bits (214), Expect = 3.290e-19
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 RVTHKRYRKKG--YTDEVLNRTIAICRPCHSAVHRAHDERTLAERFTTREELLEDEDIGRFVAWAQKQRVTKKDDASNNLLRYRR 249
            R  H +Y+K+    + + LNR I ICRPCHSA+HR +D +TLA  ++T E LL+ E + +F+ WAQKQ+VT ++D +N   RYRR
Sbjct:  143 RDVHSKYKKRADLRSQQDLNRGIDICRPCHSAIHRTYDNKTLAASYSTLEALLQSEPLQKFIRWAQKQKVTTREDMANPNFRYRR 227          
BLAST of mRNA_H-elongata_contig116638.1304.1 vs. uniprot
Match: A0A383W3Z1_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W3Z1_TETOB)

HSP 1 Score: 84.0 bits (206), Expect = 2.000e-17
Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    1 RVTHKRYRKKGYTDEVLNRTIAICRPCHSAVHRA-HDERTLAERFTTREELLEDEDIGRFVAWAQKQRVTKKDDASNNLLRYRR 249
            R  HK ++K+GY+ + L   + +CRPCHSA+HRA  D + LA  ++T E L + E++ +F AWA++QRVT K D S+   +YRR
Sbjct:  241 RDVHKEFKKRGYSSDQLQAGLMVCRPCHSAIHRAVPDNKQLAAHYSTAEALSQHEEVAKFAAWARRQRVTSKVDVSSKHFKYRR 324          
BLAST of mRNA_H-elongata_contig116638.1304.1 vs. uniprot
Match: W7T1W2_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T1W2_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.580e-17
Identity = 43/83 (51.81%), Postives = 52/83 (62.65%), Query Frame = 1
Query:    1 RVTHKRYRKKGYTDEVLNRTIAICRPCHSAVHRAHDERTLAERFTTREELLEDEDIGRFVAWAQKQRVTKKDDASNNLLRYRR 249
            R  HK   K+G + + LN   AICRPCHSAVHR +D  TLA  F T   LL DE IG+FV WA KQR  ++    N LL+Y+R
Sbjct:  141 RAMHKILLKQGMSQDELNICAAICRPCHSAVHRTYDNETLAINFYTVSALLADEKIGKFVRWASKQRGREQKMGHNPLLKYQR 223          
BLAST of mRNA_H-elongata_contig116638.1304.1 vs. uniprot
Match: A0A7S4C8S4_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C8S4_9EUGL)

HSP 1 Score: 74.7 bits (182), Expect = 8.120e-15
Identity = 41/82 (50.00%), Postives = 50/82 (60.98%), Query Frame = 1
Query:    7 THKRYRKKG-YTDEVLNRTIAICRPCHSAVHRAHDERTLAERFTTREELLEDEDIGRFVAWAQKQRVTKKDDASNNLLRYRR 249
            TH    KKG ++ + + R I ICRPCHSA+H  HD +TLA ++ T E LLE E I RF+ W  KQRV  K D     L YRR
Sbjct:  106 THSDLLKKGTFSKDKICRGIWICRPCHSAIHSLHDNKTLAAQYNTLEALLELEQIQRFIKWVSKQRVRSKKDGQ---LHYRR 184          
BLAST of mRNA_H-elongata_contig116638.1304.1 vs. uniprot
Match: A0A7J7PRS8_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PRS8_9CHLO)

HSP 1 Score: 73.9 bits (180), Expect = 1.380e-13
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    1 RVTHKRYRKKGYTDEVLNRTIAICRPCHSAVHRAHD-ERTLAERFTTREELLEDEDIGRFVAWAQKQRVTKKDDASNNLLRYRR 249
            R  HK ++K G + E L   + +CRPCHSA+HRA    + LA  ++T E + + E++ +F AWA++QRVT K D ++   +YRR
Sbjct:  312 RDVHKEFKKWGCSFEQLQAGLMVCRPCHSAIHRAVPVNKQLAMHYSTAEAISQHEEVAKFAAWARRQRVTSKGDVTSKHFKYRR 395          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116638.1304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNB9_ECTSI5.490e-3881.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R9U8X6_9STRA2.800e-2357.83Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A2K3DDI0_CHLRE9.990e-2249.40Uncharacterized protein n=2 Tax=Chlamydomonas rein... [more]
A0A7S1U0G4_9STRA3.510e-2151.81Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A150GCJ7_GONPE4.780e-2051.81Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A835WXC4_9CHLO3.290e-1948.24Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A383W3Z1_TETOB2.000e-1745.24Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
W7T1W2_9STRA2.580e-1751.81Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
A0A7S4C8S4_9EUGL8.120e-1550.00Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7J7PRS8_9CHLO1.380e-1341.67Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116638contigH-elongata_contig116638:298..549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue3.2e-29
Seed eggNOG ortholog2880.D8LNB9
EggNOG OGs2C6BY@1,2S89B@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_004430.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929678.242005-CDS-H-elongata_contig116638:297..5491622929678.242005-CDS-H-elongata_contig116638:297..549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116638 298..549 +
1691679116.294021-CDS-H-elongata_contig116638:297..5491691679116.294021-CDS-H-elongata_contig116638:297..549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116638 298..549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116638.1304.1prot_H-elongata_contig116638.1304.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116638 298..549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116638.1304.1

>prot_H-elongata_contig116638.1304.1 ID=prot_H-elongata_contig116638.1304.1|Name=mRNA_H-elongata_contig116638.1304.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
RVTHKRYRKKGYTDEVLNRTIAICRPCHSAVHRAHDERTLAERFTTREEL
LEDEDIGRFVAWAQKQRVTKKDDASNNLLRYRR*
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mRNA from alignment at H-elongata_contig116638:298..549+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116638.1304.1 ID=mRNA_H-elongata_contig116638.1304.1|Name=mRNA_H-elongata_contig116638.1304.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=252bp|location=Sequence derived from alignment at H-elongata_contig116638:298..549+ (Himanthalia elongata Himel1 dioecious)
AGGGTCACCCATAAGCGCTACAGGAAGAAGGGGTACACAGACGAGGTCCT GAACCGCACCATCGCGATATGCCGCCCTTGCCACAGCGCCGTGCACCGTG CTCACGATGAAAGGACGCTGGCCGAGCGGTTTACCACGCGGGAGGAGCTG CTAGAGGATGAAGACATCGGCCGCTTCGTGGCGTGGGCACAAAAACAGCG CGTTACGAAGAAGGATGACGCCAGCAACAACCTACTTCGCTACCGGCGAT AG
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Coding sequence (CDS) from alignment at H-elongata_contig116638:298..549+

>mRNA_H-elongata_contig116638.1304.1 ID=mRNA_H-elongata_contig116638.1304.1|Name=mRNA_H-elongata_contig116638.1304.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig116638:298..549+ (Himanthalia elongata Himel1 dioecious)
AGGGTCACCCATAAGCGCTACAGGAAGAAGGGGTACACAGACGAGGTCCT
GAACCGCACCATCGCGATATGCCGCCCTTGCCACAGCGCCGTGCACCGTG
CTCACGATGAAAGGACGCTGGCCGAGCGGTTTACCACGCGGGAGGAGCTG
CTAGAGGATGAAGACATCGGCCGCTTCGTGGCGTGGGCACAAAAACAGCG
CGTTACGAAGAAGGATGACGCCAGCAACAACCTACTTCGCTACCGGCGAT
AGAGGGTCACCCATAAGCGCTACAGGAAGAAGGGGTACACAGACGAGGTC
CTGAACCGCACCATCGCGATATGCCGCCCTTGCCACAGCGCCGTGCACCG
TGCTCACGATGAAAGGACGCTGGCCGAGCGGTTTACCACGCGGGAGGAGC
TGCTAGAGGATGAAGACATCGGCCGCTTCGTGGCGTGGGCACAAAAACAG
CGCGTTACGAAGAAGGATGACGCCAGCAACAACCTACTTCGCTACCGGCG
ATAG
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