mRNA_H-elongata_contig56034.13037.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56034.13037.1
Unique NamemRNA_H-elongata_contig56034.13037.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig56034.13037.1 vs. uniprot
Match: A0A6H5LDC1_9PHAE (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDC1_9PHAE)

HSP 1 Score: 453 bits (1166), Expect = 3.680e-150
Identity = 218/278 (78.42%), Postives = 241/278 (86.69%), Query Frame = 1
Query:    1 WQAMGIMDKEEWPLFMKVLRDPLPACFRVHSDCSFKEQVKKQLMEHLSAPMMVDGKEVKPVEELKWYPGGLAYRLGCDRRFIRKQPNLAEFHTWLTDLMETGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLIEMVSAPAPEADAVAAEEGIAMTEGIAKVDGEVGLVVANDGDRDRAYMLAHQCKRVKSPAVCVTWCLAQALPNLGACGAEKGSDKGLFDRVLADVPCSGDGTLRKQPSIWRTWTVAGGLALHPLQLLIALRGAAVLKV 834
            +QAMGIM KEEWPLFM  L++PLPACFR+HSDCSFK+QVKKQL+E L APM++DGKEVK V EL WY GGLAYRLGCDRRFIRKQP+LAEFH WLT LME+GNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQL+EM+SAP+                     DG+VGLVVAND DRDRAYMLAHQCKRV+SPA+C+TWC AQ+LPNLGA GAE+GSDKG+FDRVLADVPCSGDGTLRKQP+IWRTWTVAGGL LHPLQLLI LRGAA+LK+
Sbjct:   57 YQAMGIMPKEEWPLFMNTLKEPLPACFRIHSDCSFKDQVKKQLLELLEAPMVIDGKEVKAVRELPWYAGGLAYRLGCDRRFIRKQPHLAEFHKWLTGLMESGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLMEMISAPSATXXXXXXXXXXXXXX---XXDGDVGLVVANDSDRDRAYMLAHQCKRVQSPAICITWCSAQSLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKI 331          
BLAST of mRNA_H-elongata_contig56034.13037.1 vs. uniprot
Match: D8LLJ3_ECTSI (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ3_ECTSI)

HSP 1 Score: 285 bits (729), Expect = 2.230e-87
Identity = 142/180 (78.89%), Postives = 154/180 (85.56%), Query Frame = 1
Query:  295 METGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLIEMVSAPAPEADAVAAEEGIAMTEGIAKVDGEVGLVVANDGDRDRAYMLAHQCKRVKSPAVCVTWCLAQALPNLGACGAEKGSDKGLFDRVLADVPCSGDGTLRKQPSIWRTWTVAGGLALHPLQLLIALRGAAVLKV 834
            ME+GNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQL+EMVSAP+                     DGEVGLVVAND DRDRAYMLAHQCKRV+SPA+C+TWC AQ+LPNLGA GAE+GSDKG+FDRVLADVPCSGDGTLRKQP+IWRTWTVAGGL LHPLQLLI LRGAA+LK+
Sbjct:    1 MESGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLMEMVSAPSXXXXXXXXXXXXXXXP-----DGEVGLVVANDSDRDRAYMLAHQCKRVQSPAICITWCSAQSLPNLGAAGAERGSDKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKI 175          
BLAST of mRNA_H-elongata_contig56034.13037.1 vs. uniprot
Match: A0A835ZA58_9STRA (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA58_9STRA)

HSP 1 Score: 254 bits (649), Expect = 4.170e-80
Identity = 130/211 (61.61%), Postives = 150/211 (71.09%), Query Frame = 1
Query:  205 GGLAYRLGCDRRFIRKQPNLAEFHTWLTDLMETGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLIEMVSAPAPEADAVAAEEGIAMTEGIAKVDGEVGLVVANDGDRDRAYMLAHQCKRVKSPAVCVTWCLAQALPNLGACGAEKGS-DKGLFDRVLADVPCSGDGTLRKQPSIWRTWTVAGGLALHPLQLLIALRGAAVLKV 834
            G LAY+LG DRR IRK P L   H WL    E+G ITRQE VSM+PPLFLDV P H++LDMCAAPGSKTAQL+EMV+APA  + A  + EG               LV+AND +RDRAY+LAHQC+R  +P +CVTWC AQ  P LG     KG+ DKG+FDRVLADVPCSGDGT RK P+IWR W+  G L LHPLQL IA RGAA+LKV
Sbjct:   20 GELAYKLGADRRQIRKTPQLKALHEWLLAHTESGAITRQEEVSMVPPLFLDVHPGHIILDMCAAPGSKTAQLLEMVTAPASTSTAGESPEG---------------LVIANDANRDRAYLLAHQCRRTAAPCLCVTWCAAQLFPTLGPDAGGKGTVDKGIFDRVLADVPCSGDGTARKAPNIWRMWSTHGPLTLHPLQLSIAARGAALLKV 215          
BLAST of mRNA_H-elongata_contig56034.13037.1 vs. uniprot
Match: A0A421F623_9STRA (SAM_MT_RSMB_NOP domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F623_9STRA)

HSP 1 Score: 256 bits (654), Expect = 1.880e-76
Identity = 133/279 (47.67%), Postives = 179/279 (64.16%), Query Frame = 1
Query:    1 WQAMGIMDKEEWPLFMKVLRDPLPACFRVHSDCSFKEQVKKQLMEHLSAP-MMVDGKEVKPVEELKWYPGGLAYRLGCDRRFIRKQPNLAEFHTWLTDLMETGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLIEMVSAPAPEADAVAAEEGIAMTEGIAKVDGEVGLVVANDGDRDRAYMLAHQCKRVKSPAVCVTWCLAQALPNLGACGAEKGSDKGLFDRVLADVPCSGDGTLRKQPSIWRTWTVAGGLALHPLQLLIALRGAAVLKV 834
            ++A GI+ + +W  F K L  PLP  FR++S C F +++++ + +      ++VD + V+P+  ++WYP    +    +RR +RK P L  F TWL +L  +G+ITRQEAVSM+PPL L V+P H VLDMCAAPGSKT+QL+E +                  ++ +A  +   G+VVAND D  RAYML HQ KR+ SPA+ VT   AQ +P LG  G E  SD G+FDR+L D PCSGDGTLRK P IW+ W+   G+ALHPLQL IA RGAA+LKV
Sbjct:   52 YKAQGIVPEADWEAFKKALATPLPTTFRINSSCPFADRIREHIEQDFKFDGLVVDDEPVEPISNMQWYPDNRGFTWSVERRRVRKLPILKAFQTWLVELSNSGSITRQEAVSMIPPLVLGVEPHHKVLDMCAAPGSKTSQLLESLH-----------------SQELATGNTPTGVVVANDVDLKRAYMLVHQSKRISSPALLVTCHEAQNIPFLGEEGTE--SD-GVFDRILCDAPCSGDGTLRKNPLIWKNWSAKNGIALHPLQLQIAKRGAALLKV 310          
BLAST of mRNA_H-elongata_contig56034.13037.1 vs. uniprot
Match: A0A484DRY9_BRELC (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DRY9_BRELC)

HSP 1 Score: 255 bits (651), Expect = 3.240e-76
Identity = 134/279 (48.03%), Postives = 173/279 (62.01%), Query Frame = 1
Query:    1 WQAMGIMDKEEWPLFMKVLRDPLPACFRVHSDCSFKEQVKKQLMEHLSAPMMV-DGKEVKPVEELKWYPGGLAYRLGCDRRFIRKQPNLAEFHTWLTDLMETGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLIEMVSAPAPEADAVAAEEGIAMTEGIAKVDGEVGLVVANDGDRDRAYMLAHQCKRVKSPAVCVTWCLAQALPNLGACGAEKGSDKGLFDRVLADVPCSGDGTLRKQPSIWRTWTVAGGLALHPLQLLIALRGAAVLKV 834
            ++A  IM   +WP F K L  PLP  FR++S C F E++++ + +      +V + + V+P+  + WYP    +    +RR +RK P L EF TWL  L  +G+ITRQEAVSM+PPL L V+  H VLDMCAAPGSKT+QL+E +                  ++ +A      GLVVAND D  RAYML HQ KR+ SPA+ VT   AQ LP LG  G E     G+FDR+L DVPCSGDGTLRK P IW++W+   G+ LHPLQL IA RGAA+LKV
Sbjct:   47 YKAQNIMSDSDWPAFKKALATPLPTTFRINSSCLFAERIREHIDQDFKFDTLVLENEPVEPIRAMSWYPDNRGFTWSVERRRVRKLPILKEFQTWLVGLSTSGSITRQEAVSMIPPLVLGVKSHHKVLDMCAAPGSKTSQLLESLH-----------------SQELATGQTPTGLVVANDVDLKRAYMLVHQSKRISSPALVVTCHEAQNLPFLGQEGTEH---DGVFDRILCDVPCSGDGTLRKNPLIWKSWSAKNGIVLHPLQLQIAKRGAALLKV 305          
BLAST of mRNA_H-elongata_contig56034.13037.1 vs. uniprot
Match: H3HAP2_PHYRM (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HAP2_PHYRM)

HSP 1 Score: 254 bits (650), Expect = 3.370e-76
Identity = 132/279 (47.31%), Postives = 175/279 (62.72%), Query Frame = 1
Query:    1 WQAMGIMDKEEWPLFMKVLRDPLPACFRVHSDCSFKEQVKKQLMEHLSAP-MMVDGKEVKPVEELKWYPGGLAYRLGCDRRFIRKQPNLAEFHTWLTDLMETGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLIEMVSAPAPEADAVAAEEGIAMTEGIAKVDGEVGLVVANDGDRDRAYMLAHQCKRVKSPAVCVTWCLAQALPNLGACGAEKGSDKGLFDRVLADVPCSGDGTLRKQPSIWRTWTVAGGLALHPLQLLIALRGAAVLKV 834
            ++A  I+   +W  F K L  PLP  FR++S C F +++++ + +      ++VD + V+P+  + WYP    +    +RR +RK P L EF +WL +L  +G+ITRQEAVSM+PPL L V+P H VLDMCAAPGSKT+QL+E +                  ++  A      G+VVAND D  RAYML HQ KR+ SPA+ VT   AQ +P LG  G EK   +G+FDRVL D PCSGDGTLRK P IW+ W+   G+ALHPLQL IA RGAA+LKV
Sbjct:   46 YKAQNIVPDADWDAFKKALATPLPTTFRINSSCPFADRIREHIEQDFKFDGLVVDDEPVEPISPMPWYPDSRGFTWSVERRRVRKLPILKEFQSWLVELSNSGSITRQEAVSMIPPLVLGVEPHHKVLDMCAAPGSKTSQLLESLH-----------------SQEFATGKTPTGVVVANDVDLKRAYMLVHQSKRISSPALLVTCHEAQNIPFLGKDGTEK---EGVFDRVLCDAPCSGDGTLRKNPLIWKNWSAKNGIALHPLQLQIAKRGAALLKV 304          
BLAST of mRNA_H-elongata_contig56034.13037.1 vs. uniprot
Match: M4B481_HYAAE (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B481_HYAAE)

HSP 1 Score: 253 bits (646), Expect = 2.910e-75
Identity = 130/279 (46.59%), Postives = 177/279 (63.44%), Query Frame = 1
Query:    1 WQAMGIMDKEEWPLFMKVLRDPLPACFRVHSDCSFKEQVKKQLMEHLSAP-MMVDGKEVKPVEELKWYPGGLAYRLGCDRRFIRKQPNLAEFHTWLTDLMETGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLIEMVSAPAPEADAVAAEEGIAMTEGIAKVDGEVGLVVANDGDRDRAYMLAHQCKRVKSPAVCVTWCLAQALPNLGACGAEKGSDKGLFDRVLADVPCSGDGTLRKQPSIWRTWTVAGGLALHPLQLLIALRGAAVLKV 834
            ++A  I+   +W  F K L  PLP  FR++S C F E++++ + +      ++VD ++V+P+  + WYP    +    +RR +RK P L +F  WL +L ++G+ITRQEAVSM+PPL L V+P H VLDMCAAPGSKT+QL+E +                  ++ +A      G+VVAND D  RAYML HQ KR+ SPA+ VT   AQ  P LG  G E    KG+FDR+L DVPCSGDGT+RK P IW++W+   G+ALHPLQL IA RGA++LKV
Sbjct:   51 YKAQDIVADVDWDAFKKALATPLPTTFRINSSCPFAERIREHVEQDFKFDGLVVDDEQVEPISLMSWYPDNRGFTWSVERRRVRKLPILKKFQAWLVELSDSGSITRQEAVSMIPPLVLGVEPHHKVLDMCAAPGSKTSQLLESLH-----------------SQELATGKTPTGVVVANDVDLKRAYMLVHQSKRINSPALLVTCHEAQHFPFLGKDGTES---KGVFDRILCDVPCSGDGTIRKNPLIWKSWSAKNGIALHPLQLQIAKRGASLLKV 309          
BLAST of mRNA_H-elongata_contig56034.13037.1 vs. uniprot
Match: G4ZPP8_PHYSP (SAM_MT_RSMB_NOP domain-containing protein (Fragment) n=3 Tax=Phytophthora TaxID=4783 RepID=G4ZPP8_PHYSP)

HSP 1 Score: 249 bits (636), Expect = 6.360e-75
Identity = 132/279 (47.31%), Postives = 174/279 (62.37%), Query Frame = 1
Query:    1 WQAMGIMDKEEWPLFMKVLRDPLPACFRVHSDCSFKEQVKKQLMEHLSAP-MMVDGKEVKPVEELKWYPGGLAYRLGCDRRFIRKQPNLAEFHTWLTDLMETGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLIEMVSAPAPEADAVAAEEGIAMTEGIAKVDGEVGLVVANDGDRDRAYMLAHQCKRVKSPAVCVTWCLAQALPNLGACGAEKGSDKGLFDRVLADVPCSGDGTLRKQPSIWRTWTVAGGLALHPLQLLIALRGAAVLKV 834
            ++A  IM   +W  F K L  PLP  FR++S C F +++++ + +      ++VD + V+P+  + WYP    +    +RR +RK P L EF +WL +L  +G+ITRQEAVSM+PPL L V+  H VLDMCAAPGSKT+QL+E + +          E G   T          G+VVAND D  RAYML HQ KR+ SPA+ VT   AQ +P LG  G E+    G+FDR+L D PCSGDGTLRK P IW+ W+   G+ALHPLQL IA RGAA+LKV
Sbjct:   50 YKAQNIMADADWAAFKKALATPLPTTFRINSSCPFADRIREHIEQDFKFDGLVVDDEPVEPISPMPWYPDNRGFTWSVERRRVRKLPILKEFQSWLVELSNSGSITRQEAVSMIPPLVLGVESHHKVLDMCAAPGSKTSQLLESLHSKE-------FETGKTPT----------GVVVANDVDLKRAYMLVHQSKRISSPALLVTCHEAQNIPFLGEDGTER---DGVFDRILCDAPCSGDGTLRKNPLIWKNWSAKNGIALHPLQLQIAKRGAALLKV 308          
BLAST of mRNA_H-elongata_contig56034.13037.1 vs. uniprot
Match: K3WGW8_GLOUD (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGW8_GLOUD)

HSP 1 Score: 252 bits (643), Expect = 8.520e-75
Identity = 137/282 (48.58%), Postives = 179/282 (63.48%), Query Frame = 1
Query:    1 WQAMGIMDKEEWPLFMKVLRDPLPACFRVHSDCSFKEQVKKQLMEHLSAPMMV--DGKEVKPVEELKWYPGGLAYRLGCDRRFIRKQPNLAEFHTWLTDLMETGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLIEMVSAPAPEADAVAAEEGIAMTEGIAKVDGEV--GLVVANDGDRDRAYMLAHQCKRVKSPAVCVTWCLAQALPNLGACGAEKGSDKGLFDRVLADVPCSGDGTLRKQPSIWRTWTVAGGLALHPLQLLIALRGAAVLKV 834
            +QA G++ + EW  FMK L  PLP  FR+++ C F E++++++        +V  DG+EV P+  + WYP    ++   +RR +RK P LAEF  WL +L  +G  TRQEAVSM+PPL LDVQP H VLDMCAAPGSKT+QL+E + A          +E          V GE   G+V+AND D  RAYML HQ KR+ SPA+ VT   AQ +P +G    EK S+ G FDR+L D PCSGDGTLRK P IW+ W    G+ALHPLQ+ I+ RGA++LKV
Sbjct:   52 YQAQGVVPEAEWEQFMKFLATPLPTTFRINNSCPFAERIRERIATDFKYEGLVLDDGEEVAPIAPMPWYPNQKGFQWSVERRKVRKLPILAEFQKWLVELTLSGATTRQEAVSMIPPLILDVQPHHKVLDMCAAPGSKTSQLLESLHA----------QE---------HVTGETPTGMVMANDIDIKRAYMLVHQSKRIGSPALIVTCHEAQHIPYVGE--PEKKSE-GFFDRILCDAPCSGDGTLRKNPIIWKQWDARNGIALHPLQVEISKRGASLLKV 311          
BLAST of mRNA_H-elongata_contig56034.13037.1 vs. uniprot
Match: W2QK78_PHYPN (SAM_MT_RSMB_NOP domain-containing protein n=15 Tax=Phytophthora TaxID=4783 RepID=W2QK78_PHYPN)

HSP 1 Score: 249 bits (636), Expect = 1.090e-74
Identity = 129/279 (46.24%), Postives = 174/279 (62.37%), Query Frame = 1
Query:    1 WQAMGIMDKEEWPLFMKVLRDPLPACFRVHSDCSFKEQVKKQLMEHLSAP-MMVDGKEVKPVEELKWYPGGLAYRLGCDRRFIRKQPNLAEFHTWLTDLMETGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLIEMVSAPAPEADAVAAEEGIAMTEGIAKVDGEVGLVVANDGDRDRAYMLAHQCKRVKSPAVCVTWCLAQALPNLGACGAEKGSDKGLFDRVLADVPCSGDGTLRKQPSIWRTWTVAGGLALHPLQLLIALRGAAVLKV 834
            ++A  I+   +W  F K L  PLP  FR++S C F +++++ + +      ++VD + V+P+  + WYP    +    +RR +RK P L EF +WL +L  +G+ITRQEAVSM+PPL L V+P H VLDMCAAPGSKT+QL+E +                  ++ +A      G+VVAND D  RAYML HQ KR+ SPA+ VT   AQ +P LG  G E    +G+FDR+L D PCSGDGTLRK P IW+ W+   G+ALHPLQL IA RGA +LKV
Sbjct:   52 YKAQNIVADADWDAFKKALGTPLPTTFRINSSCPFADRIREHIEQDFKFDGLVVDDEPVEPISCMPWYPDNRGFTWSVERRRVRKLPILKEFQSWLVELSNSGSITRQEAVSMIPPLVLGVEPYHKVLDMCAAPGSKTSQLLESLH-----------------SQELATGKTPTGVVVANDVDLKRAYMLVHQSKRINSPALLVTCHEAQNIPFLGKDGTES---EGVFDRILCDAPCSGDGTLRKNPLIWKNWSAKNGIALHPLQLQIAKRGATLLKV 310          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56034.13037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LDC1_9PHAE3.680e-15078.42SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
D8LLJ3_ECTSI2.230e-8778.89SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
A0A835ZA58_9STRA4.170e-8061.61S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A421F623_9STRA1.880e-7647.67SAM_MT_RSMB_NOP domain-containing protein n=4 Tax=... [more]
A0A484DRY9_BRELC3.240e-7648.03SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
H3HAP2_PHYRM3.370e-7647.31SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
M4B481_HYAAE2.910e-7546.59SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
G4ZPP8_PHYSP6.360e-7547.31SAM_MT_RSMB_NOP domain-containing protein (Fragmen... [more]
K3WGW8_GLOUD8.520e-7548.58SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
W2QK78_PHYPN1.090e-7446.24SAM_MT_RSMB_NOP domain-containing protein n=15 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56034contigH-elongata_contig56034:42..2459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score287.7
Seed ortholog evalue5.7e-75
Seed eggNOG ortholog2880.D8LLJ3
KEGG koko:K15334,ko:K15335
EggNOG free text desc.tRNA (cytosine-5-)-methyltransferase activity
EggNOG OGsCOG0144@1,KOG2198@2759
EC2.1.1.202,2.1.1.203
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons5
Model size843
Cds size834
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56034.13037.1prot_H-elongata_contig56034.13037.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56034 42..2450 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930912.2867448-CDS-H-elongata_contig56034:41..2081622930912.2867448-CDS-H-elongata_contig56034:41..208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56034 42..208 -
1691679621.8288348-CDS-H-elongata_contig56034:41..2081691679621.8288348-CDS-H-elongata_contig56034:41..208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56034 42..208 -
1622930912.3082716-CDS-H-elongata_contig56034:782..10831622930912.3082716-CDS-H-elongata_contig56034:782..1083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56034 783..1083 -
1691679621.8440397-CDS-H-elongata_contig56034:782..10831691679621.8440397-CDS-H-elongata_contig56034:782..1083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56034 783..1083 -
1622930912.3263013-CDS-H-elongata_contig56034:1242..13531622930912.3263013-CDS-H-elongata_contig56034:1242..1353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56034 1243..1353 -
1691679621.853466-CDS-H-elongata_contig56034:1242..13531691679621.853466-CDS-H-elongata_contig56034:1242..1353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56034 1243..1353 -
1622930912.3428643-CDS-H-elongata_contig56034:1801..19521622930912.3428643-CDS-H-elongata_contig56034:1801..1952Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56034 1802..1952 -
1691679621.8634546-CDS-H-elongata_contig56034:1801..19521691679621.8634546-CDS-H-elongata_contig56034:1801..1952Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56034 1802..1952 -
1622930912.3566542-CDS-H-elongata_contig56034:2346..24501622930912.3566542-CDS-H-elongata_contig56034:2346..2450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56034 2347..2450 -
1691679621.8754463-CDS-H-elongata_contig56034:2346..24501691679621.8754463-CDS-H-elongata_contig56034:2346..2450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56034 2347..2450 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930912.3750248-UTR-H-elongata_contig56034:2450..24591622930912.3750248-UTR-H-elongata_contig56034:2450..2459Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56034 2451..2459 -
1691679621.8833632-UTR-H-elongata_contig56034:2450..24591691679621.8833632-UTR-H-elongata_contig56034:2450..2459Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56034 2451..2459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56034.13037.1

>prot_H-elongata_contig56034.13037.1 ID=prot_H-elongata_contig56034.13037.1|Name=mRNA_H-elongata_contig56034.13037.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=278bp
MGIMDKEEWPLFMKVLRDPLPACFRVHSDCSFKEQVKKQLMEHLSAPMMV
DGKEVKPVEELKWYPGGLAYRLGCDRRFIRKQPNLAEFHTWLTDLMETGN
ITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLIEMVSAPAPEADA
VAAEEGIAMTEGIAKVDGEVGLVVANDGDRDRAYMLAHQCKRVKSPAVCV
TWCLAQALPNLGACGAEKGSDKGLFDRVLADVPCSGDGTLRKQPSIWRTW
TVAGGLALHPLQLLIALRGAAVLKVSS*
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mRNA from alignment at H-elongata_contig56034:42..2459-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56034.13037.1 ID=mRNA_H-elongata_contig56034.13037.1|Name=mRNA_H-elongata_contig56034.13037.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2418bp|location=Sequence derived from alignment at H-elongata_contig56034:42..2459- (Himanthalia elongata Himel1 dioecious)
TGGCAGGCGATGGGCATCATGGACAAAGAAGAGTGGCCTCTGTTCATGAA AGTGCTGCGCGACCCTCTCCCCGCGTGCTTTCGCGTGCATTCAGACTGCA GCTTCAAAGAGCAGTAAGTCGGCCGGTTAGCGGGTCTGTCTGAATCCACC AAGATCGTCGTTGCCCCCCCCCCTTCCATGCCCCCATCGTCTTTTGACCA CACGGTACTCTCACACCATTAGAAGCTGAACACGTTGTCGCAATACTCCT TTACAGTAAGGTTTAATATATGTGGGATGGTTTTAAGTAACACGCTAGTT ATGCGAACTACGACCACGCGTGGAGAGCAGAACGGTGAACGCCTCATACT CGCCTTGTGACATTTAAGGGATCTTAGGGAAGGCGACGTTAGGTACTCCC CCCCCCCCCCTACTAGAGCATCCACCTTTTCTCTCCACCAAGCGTCGATG CGTTTCCTCCCCCCCACCCCCCCCCCTCCGCCGGAAAATGCTCGCGGGGC GGATCAGGGTGAAGAAACAGCTCATGGAGCACCTGAGCGCCCCCATGATG GTGGATGGGAAGGAGGTCAAGCCCGTGGAGGAGCTGAAGTGGTACCCCGG GGGGCTGGCTTACCGCCTCGGCTGCGACCGTCGCTTCATCCGGAAGCAGC CCAATCTGGTGAGGAATCTTGGATGGGTTCGACGCTTGAAGGGCTAGGGT CGAGGGGGGGGGGTTCTGTCTTAGGACAGGCGCAGTCGGTACCATTAATG AACACCCGGAAAAGACAGATTGGGTGTGCATGTATTCGGAGTTCTCTCTC CCCGCTCCCCCCCTTCCCCGTTTCTCTTTTCCACATAATCGATTGCCGCT CTCCATCGATCTGCCCAATGGATCTTGTGTATTCCGGACCAAGACTCATC AACCGTTGCCCGCTTTGCTTCTGATGCGGTTCAAGTTACCGTTGCAGCGT GATCACGATAGACTCGAATGTAACCTCCAGGCAAGAAAAATATGTATGCA GAACGATGCCCACCCCTCTCCCCCCAGCTCTATTTATCCCGTATATTTCC GCAGTGATGACCCTGCGCGGACTCCCGTTGTCGCTGAAACACAATTTGTG GAACAGGCGGAGTTCCACACGTGGCTGACGGATCTCATGGAGACAGGAAA TATAACTCGCCAGGAGGCCGTGAGCATGCTGCCTCCGCTCTTCCTTGACG TTCAGCCCAAGCACCTCGTGAGTCTCCGGCCCCGAAACGCCTCACCCGCG TGGTCGCAAATCGTTCGATTCTTCATATTCTTCTTTGCTTTTTGCTCCCT CCCACCGTCTTCATCCTCTTTCTTCGCACACTGCCCCGATCGCATTGTCA CCGCTGTCGACGTGAGGGGGACTTAGGTGTTAGACATGTGTGCCGCGCCG GGCTCGAAGACGGCACAGCTGATTGAGATGGTGTCCGCTCCAGCCCCCGA GGCTGACGCAGTTGCGGCCGAAGAGGGCATTGCCATGACCGAGGGTATAG CGAAAGTTGACGGGGAAGTGGGGCTCGTGGTGGCCAACGACGGCGACCGT GACCGCGCGTACATGCTGGCGCACCAGTGCAAGAGAGTCAAAAGCCCCGC CGTCTGCGTCACATGGTGCCTGGCGCAGGCCCTGCCGAATCTCGGTGCCT GTGGTGCGGAGAAGGGCTCGGACAAAGGTAAGCGACAGTGGCGCAGTTGA TGAGAATGTCGGCGAAATTAAGGGGGACTATGGGTCAATATTGTGGCAGG GAGAGGCTAAGGGTAGGTAGGACATCCGACTTTTGGACTTTAAAAAATGC AAGGCCGAACTTTGATCTTTGGTCGAAAAGGCTATGAAATTACGTTAGGA AAATGCGTGCACGGATAGAGTTTTGGGACCCTGAAGGCGATGGTGTCTGC AATGATTGTCTCCGCAATCCTACGCCCTCCCGTACCGGAGATTCTTGTGT GTGAGCTCTGCATAAGAGGGGAGGTTTGGTTGGAAAATTGAGTCGAACCT ATAATTTAAACAGCATCAGTACCACGAAAACGCGTGAAAACCTGTAAGGT AGCGCTTGGCCTCCCGATCATACCCTTCCTTGTCATACCCTTCCCGCGCT CCTCTGACCAGCCTCCTACAATCATTCTATTTTTATTTTTTATGTCTTTC TCTGTCATACCATTTTCTACATCGTCAGTGATGATTTGTCCCCCCCCCCC CCCGCTTCACGTACATTATCGGGTTGGTGTACCATATTCGCCCTTCCTCA GGGTTGTTTGACCGCGTACTGGCAGACGTCCCCTGCAGTGGCGACGGCAC TCTGCGGAAGCAGCCGTCGATCTGGAGGACGTGGACGGTCGCCGGAGGTT TGGCGCTGCATCCGCTGCAGCTGCTCATCGCCCTACGCGGTGCCGCCGTC CTTAAGGTCAGCTCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig56034:42..2459-

>mRNA_H-elongata_contig56034.13037.1 ID=mRNA_H-elongata_contig56034.13037.1|Name=mRNA_H-elongata_contig56034.13037.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1668bp|location=Sequence derived from alignment at H-elongata_contig56034:42..2459- (Himanthalia elongata Himel1 dioecious)
ATGGGCATCATGGACAAAGAAGAGTGGCCTCTGTTCATGAAAGTGCTGCG
CGACCCTCTCCCCGCGTGCTTTCGCGTGCATTCAGACTGCAGCTTCAAAG
AGCAATGGGCATCATGGACAAAGAAGAGTGGCCTCTGTTCATGAAAGTGC
TGCGCGACCCTCTCCCCGCGTGCTTTCGCGTGCATTCAGACTGCAGCTTC
AAAGAGCAGGTGAAGAAACAGCTCATGGAGCACCTGAGCGCCCCCATGAT
GGTGGATGGGAAGGAGGTCAAGCCCGTGGAGGAGCTGAAGTGGTACCCCG
GGGGGCTGGCTTACCGCCTCGGCTGCGACCGTCGCTTCATCCGGAAGCAG
CCCAATCTGGGTGAAGAAACAGCTCATGGAGCACCTGAGCGCCCCCATGA
TGGTGGATGGGAAGGAGGTCAAGCCCGTGGAGGAGCTGAAGTGGTACCCC
GGGGGGCTGGCTTACCGCCTCGGCTGCGACCGTCGCTTCATCCGGAAGCA
GCCCAATCTGGCGGAGTTCCACACGTGGCTGACGGATCTCATGGAGACAG
GAAATATAACTCGCCAGGAGGCCGTGAGCATGCTGCCTCCGCTCTTCCTT
GACGTTCAGCCCAAGCACCTCGCGGAGTTCCACACGTGGCTGACGGATCT
CATGGAGACAGGAAATATAACTCGCCAGGAGGCCGTGAGCATGCTGCCTC
CGCTCTTCCTTGACGTTCAGCCCAAGCACCTCGTGTTAGACATGTGTGCC
GCGCCGGGCTCGAAGACGGCACAGCTGATTGAGATGGTGTCCGCTCCAGC
CCCCGAGGCTGACGCAGTTGCGGCCGAAGAGGGCATTGCCATGACCGAGG
GTATAGCGAAAGTTGACGGGGAAGTGGGGCTCGTGGTGGCCAACGACGGC
GACCGTGACCGCGCGTACATGCTGGCGCACCAGTGCAAGAGAGTCAAAAG
CCCCGCCGTCTGCGTCACATGGTGCCTGGCGCAGGCCCTGCCGAATCTCG
GTGCCTGTGGTGCGGAGAAGGGCTCGGACAAAGGTGTTAGACATGTGTGC
CGCGCCGGGCTCGAAGACGGCACAGCTGATTGAGATGGTGTCCGCTCCAG
CCCCCGAGGCTGACGCAGTTGCGGCCGAAGAGGGCATTGCCATGACCGAG
GGTATAGCGAAAGTTGACGGGGAAGTGGGGCTCGTGGTGGCCAACGACGG
CGACCGTGACCGCGCGTACATGCTGGCGCACCAGTGCAAGAGAGTCAAAA
GCCCCGCCGTCTGCGTCACATGGTGCCTGGCGCAGGCCCTGCCGAATCTC
GGTGCCTGTGGTGCGGAGAAGGGCTCGGACAAAGGGTTGTTTGACCGCGT
ACTGGCAGACGTCCCCTGCAGTGGCGACGGCACTCTGCGGAAGCAGCCGT
CGATCTGGAGGACGTGGACGGTCGCCGGAGGTTTGGCGCTGCATCCGCTG
CAGCTGCTCATCGCCCTACGCGGTGCCGCCGTCCTTAAGGTCAGCTCTTG
AGGTTGTTTGACCGCGTACTGGCAGACGTCCCCTGCAGTGGCGACGGCAC
TCTGCGGAAGCAGCCGTCGATCTGGAGGACGTGGACGGTCGCCGGAGGTT
TGGCGCTGCATCCGCTGCAGCTGCTCATCGCCCTACGCGGTGCCGCCGTC
CTTAAGGTCAGCTCTTGA
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