mRNA_H-elongata_contig56019.13034.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56019.13034.1
Unique NamemRNA_H-elongata_contig56019.13034.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56019.13034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56019contigH-elongata_contig56019:473..2904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size569
Cds size552
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56019.13034.1prot_H-elongata_contig56019.13034.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56019 488..2904 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930911.8796365-UTR-H-elongata_contig56019:472..4871622930911.8796365-UTR-H-elongata_contig56019:472..487Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56019 473..487 +
1691679621.660002-UTR-H-elongata_contig56019:472..4871691679621.660002-UTR-H-elongata_contig56019:472..487Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56019 473..487 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930911.8979979-CDS-H-elongata_contig56019:487..5591622930911.8979979-CDS-H-elongata_contig56019:487..559Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56019 488..559 +
1691679621.6702592-CDS-H-elongata_contig56019:487..5591691679621.6702592-CDS-H-elongata_contig56019:487..559Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56019 488..559 +
1622930911.9180126-CDS-H-elongata_contig56019:1312..14051622930911.9180126-CDS-H-elongata_contig56019:1312..1405Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56019 1313..1405 +
1691679621.6781251-CDS-H-elongata_contig56019:1312..14051691679621.6781251-CDS-H-elongata_contig56019:1312..1405Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56019 1313..1405 +
1622930911.9417543-CDS-H-elongata_contig56019:2163..22291622930911.9417543-CDS-H-elongata_contig56019:2163..2229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56019 2164..2229 +
1691679621.6864712-CDS-H-elongata_contig56019:2163..22291691679621.6864712-CDS-H-elongata_contig56019:2163..2229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56019 2164..2229 +
1622930911.9660337-CDS-H-elongata_contig56019:2583..29041622930911.9660337-CDS-H-elongata_contig56019:2583..2904Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56019 2584..2904 +
1691679621.697795-CDS-H-elongata_contig56019:2583..29041691679621.697795-CDS-H-elongata_contig56019:2583..2904Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56019 2584..2904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56019.13034.1

>prot_H-elongata_contig56019.13034.1 ID=prot_H-elongata_contig56019.13034.1|Name=mRNA_H-elongata_contig56019.13034.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=184bp
MDATAVVDGTCVKVVSGRHAGLTGVARGVGSALRIMILELPSPSRLKTLR
VGIDQVEVAAQGPVNAKRCGTASVLARTPNTSRQGNRKRSWDRVPALTTD
DSTLAADAETKAAVQRGPEGDEAEGTSKETGTAKATATAMTTRFQPRRGY
FPADSPPPRCSVTYWGSKNCDVARSSFQAIAKDF
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mRNA from alignment at H-elongata_contig56019:473..2904+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56019.13034.1 ID=mRNA_H-elongata_contig56019.13034.1|Name=mRNA_H-elongata_contig56019.13034.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2432bp|location=Sequence derived from alignment at H-elongata_contig56019:473..2904+ (Himanthalia elongata Himel1 dioecious)
GGTGCACGCGAGGAGATGGACGCAACGGCGGTCGTGGACGGGACTTGTGT
GAAGGTGGTTTCGGGTCGTCATGCGGGGCTGACGGGGGTAAGTTTCCGGT
GCAGTGCGGGATGGGGTGAGTACTTCTCCAGCAGAATAACGGGTCGGGGC
GTAGTGGGAGAAAAGGAGAGAAGCCCGGCAAACCTCGTGTTTCGTGTTCC
AGCTCGAGCTTCTTCAGTATTGTGCACCGGGGTAGCATCATCTCGCCTTA
AGTGTCGTGGGAAATAAATGCTTGTGAGGCCCTCTCTGTTCTTGGTTCTC
CATGACATGCAATACGTCCACGATGGCGTTCGAGCGGCGTTGTCGCTGTG
GGTGGATATCAGCACGTACGGGGCGATGCGACGCTGTGGAAACTCTTCTC
CCCCCCTCCCTCCACATTTTTTGGCACAGTACAGCGAGGCGTTACGCCTT
ATGTCGGGGTGTGCGGGCTCTCGACTTGTTGCAGACGATTGTTGAAAAGC
CCACCCAGGTCGCAAATTATCCCTAAAAATCCCGCCTAGGTCGCCGATGG
GAAGATGCAGAAAACAATATCGTCCTTTTCCCGTGGCTGTCGCTGTAGAT
GGAGCTATGTCGCCCTTTGGAGGGTGTTTGCCTTGGAGCTATGAGCTAAA
ACCAGTCATTCTGCTTTTTACCCCCTGTGGCGACTCTTTCTTTGTACCTA
TACATGGAAAGGAACGGGATCACAAGATGCTGGTAGTTACGGGAAGGGGA
GGGTCTCTTTGTTTTCTTCCCCTTGTTCGAGCATTAACCGCTTGGCCACC
CGTTTTGGTTGTTCGGTGCGGGCGGTTTTGTTATTCCCAGGTAGCCCGAG
GGGTCGGCAGCGCGCTAAGGATAATGATATTGGAGCTCCCTTCCCCGTCG
CGGCTCAAGACTCTCCGTGTGGGGATTGATCAGGTCGGGATGAGGATAAG
GGTGCGCTCACGTCAGCCTGTTTTTTCTTCCGACTTTGAATAAAATATTA
ATCAGGATGGCCTGCCATCGAGCGCCCTTGCGGTGCGCATGCATGTGCCC
CCCCCACACACACACACACACCCCGACCCCAACACACACTGACTATGGAA
ATGAACTGATCCAGCCAGTACTTTGCTTTGAATCGTACAGTGGTATGTTT
CCTGTTTCCTCGTTAAGCCTTTGTATCGAATCCCGATCCTCTCTAACCTT
CTCGCCCACCCCCTCGGTATTTTGTTTTAGTACTATGGCCGCCCCCGTGA
TCCTGACACCAACCGATATATGTATCCGTACCCGTATCCCTACCACCATG
TACCTTTTTGGCGTTGAGGATTGGGGGGAGGGGGTGGTCTGCACAAGAAC
AACTTTTAATTCCGATTACACCCCGAAATGTCCTTCCGAATCTCTGATAC
CCTTCCACCGAGGGTAATTAGATTCCCCGATAAAATCTCCCCGAAGAGAA
CGTTCCCATCACCAGACTATGAAGGGGCACGTACCCGAACGAAATGCACA
TTAGACTCCGCTGATGCACGTACCGCAGCGTCGGTGGTATCATCCCCTAT
TTGTTAATCCGACGACCACAAGCGACGCACAGAAATTTTCTCCGTGACGT
CATGTTCTGTGCCGTATTTAATTAATTTATTTCTTACTGTAGTTATTTGT
CATTTCTTTCACCCTCCTTTTTTGTCCACCCGCGCTCTCAGGTGGAGGTG
GCCGCCCAGGGCCCTGTCAACGCCAAACGATGCGGCACTGCTTCGGTACT
GGCGAGAGTGAGTTTCGAGGGGACTTGATATAGAAGAGGGTGGGAGAAAG
GGAAACTCTACGACGGTTACATTTCAGTTTATAAATGGCGGTGAAGTTTC
TGTGGATGGATGGATCATATTTTCTGCCAATTTAAGACTTTTTTTATGGC
TTTTAGGTCTCTTCGACCAATAAGAGACGAGAGGATGAATATCGCACCGC
ACAGCATACCCCCCCCCCCCTTGCTGGATGTATGGGAAACAAGGGGTTGA
AAATCAGCTCCCGCCTCTTTCTCGCGCCAGGCGTTTTTCTTATTTTTCCA
TCGCATTTCATGATATCCTTTCTTTTTTTGTGGTGATGTCGCGTGGGGTC
GTGGCGTGCAGACACCCAATACATCCAGGCAAGGAAACAGGAAGCGTTCA
TGGGATCGCGTTCCGGCACTGACGACAGACGACTCCACCTTGGCGGCGGA
TGCGGAAACGAAAGCGGCAGTACAGAGAGGACCCGAGGGAGACGAGGCAG
AGGGTACATCAAAGGAAACTGGAACGGCAAAGGCGACCGCGACGGCGATG
ACGACGCGCTTTCAACCGAGACGGGGATATTTCCCGGCGGACTCTCCCCC
GCCCCGTTGTAGTGTCACCTATTGGGGAAGCAAGAATTGTGACGTAGCGC
GCAGCTCCTTTCAGGCGATCGCGAAGGATTTT
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Coding sequence (CDS) from alignment at H-elongata_contig56019:473..2904+

>mRNA_H-elongata_contig56019.13034.1 ID=mRNA_H-elongata_contig56019.13034.1|Name=mRNA_H-elongata_contig56019.13034.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1104bp|location=Sequence derived from alignment at H-elongata_contig56019:473..2904+ (Himanthalia elongata Himel1 dioecious)
ATGGACGCAACGGCGGTCGTGGACGGGACTTGTGTGAAGGTGGTTTCGGG
TCGTCATGCGGGGCTGACGGGGATGGACGCAACGGCGGTCGTGGACGGGA
CTTGTGTGAAGGTGGTTTCGGGTCGTCATGCGGGGCTGACGGGGGTAGCC
CGAGGGGTCGGCAGCGCGCTAAGGATAATGATATTGGAGCTCCCTTCCCC
GTCGCGGCTCAAGACTCTCCGTGTGGGGATTGATCAGGTAGCCCGAGGGG
TCGGCAGCGCGCTAAGGATAATGATATTGGAGCTCCCTTCCCCGTCGCGG
CTCAAGACTCTCCGTGTGGGGATTGATCAGGTGGAGGTGGCCGCCCAGGG
CCCTGTCAACGCCAAACGATGCGGCACTGCTTCGGTACTGGCGAGAGTGG
AGGTGGCCGCCCAGGGCCCTGTCAACGCCAAACGATGCGGCACTGCTTCG
GTACTGGCGAGAACACCCAATACATCCAGGCAAGGAAACAGGAAGCGTTC
ATGGGATCGCGTTCCGGCACTGACGACAGACGACTCCACCTTGGCGGCGG
ATGCGGAAACGAAAGCGGCAGTACAGAGAGGACCCGAGGGAGACGAGGCA
GAGGGTACATCAAAGGAAACTGGAACGGCAAAGGCGACCGCGACGGCGAT
GACGACGCGCTTTCAACCGAGACGGGGATATTTCCCGGCGGACTCTCCCC
CGCCCCGTTGTAGTGTCACCTATTGGGGAAGCAAGAATTGTGACGTAGCG
CGCAGCTCCTTTCAGGCGATCGCGAAGGATTTTACACCCAATACATCCAG
GCAAGGAAACAGGAAGCGTTCATGGGATCGCGTTCCGGCACTGACGACAG
ACGACTCCACCTTGGCGGCGGATGCGGAAACGAAAGCGGCAGTACAGAGA
GGACCCGAGGGAGACGAGGCAGAGGGTACATCAAAGGAAACTGGAACGGC
AAAGGCGACCGCGACGGCGATGACGACGCGCTTTCAACCGAGACGGGGAT
ATTTCCCGGCGGACTCTCCCCCGCCCCGTTGTAGTGTCACCTATTGGGGA
AGCAAGAATTGTGACGTAGCGCGCAGCTCCTTTCAGGCGATCGCGAAGGA
TTTT
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