mRNA_H-elongata_contig55986.13028.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55986.13028.1
Unique NamemRNA_H-elongata_contig55986.13028.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55986.13028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55986contigH-elongata_contig55986:2354..2692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size340
Cds size339
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930911.0276883-CDS-H-elongata_contig55986:2353..26921622930911.0276883-CDS-H-elongata_contig55986:2353..2692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55986 2354..2692 +
1691679621.353489-CDS-H-elongata_contig55986:2353..26921691679621.353489-CDS-H-elongata_contig55986:2353..2692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55986 2354..2692 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55986.13028.1prot_H-elongata_contig55986.13028.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55986 2354..2692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55986.13028.1

>prot_H-elongata_contig55986.13028.1 ID=prot_H-elongata_contig55986.13028.1|Name=mRNA_H-elongata_contig55986.13028.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MADIIDVTGVPEAQGSPPHREDTPMDTETHRDDEGRSNVEKVASSRPAGF
KPRRNLSCWLYKHGNWHRHDDKAHSLCPHCLQIIPCKNSQTTSMWSHMEV
HHTEDFKHAKTGQ
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mRNA from alignment at H-elongata_contig55986:2354..2692+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55986.13028.1 ID=mRNA_H-elongata_contig55986.13028.1|Name=mRNA_H-elongata_contig55986.13028.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=339bp|location=Sequence derived from alignment at H-elongata_contig55986:2354..2692+ (Himanthalia elongata Himel1 dioecious)
ATGGCCGACATCATAGATGTTACAGGTGTGCCTGAAGCACAAGGGTCGCC
TCCACACCGTGAAGATACCCCGATGGATACGGAAACACACCGGGACGACG
AGGGCAGGTCCAACGTGGAGAAGGTTGCAAGCTCCCGGCCGGCGGGTTTC
AAGCCAAGACGCAATTTATCATGCTGGCTCTATAAGCATGGAAATTGGCA
CCGGCACGACGACAAGGCGCACTCTCTTTGCCCACATTGTTTGCAGATAA
TTCCCTGCAAAAACTCACAGACGACGAGCATGTGGAGCCATATGGAGGTT
CACCACACGGAAGATTTCAAACACGCCAAGACAGGGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig55986:2354..2692+

>mRNA_H-elongata_contig55986.13028.1 ID=mRNA_H-elongata_contig55986.13028.1|Name=mRNA_H-elongata_contig55986.13028.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig55986:2354..2692+ (Himanthalia elongata Himel1 dioecious)
ATGGCCGACATCATAGATGTTACAGGTGTGCCTGAAGCACAAGGGTCGCC
TCCACACCGTGAAGATACCCCGATGGATACGGAAACACACCGGGACGACG
AGGGCAGGTCCAACGTGGAGAAGGTTGCAAGCTCCCGGCCGGCGGGTTTC
AAGCCAAGACGCAATTTATCATGCTGGCTCTATAAGCATGGAAATTGGCA
CCGGCACGACGACAAGGCGCACTCTCTTTGCCCACATTGTTTGCAGATAA
TTCCCTGCAAAAACTCACAGACGACGAGCATGTGGAGCCATATGGAGGTT
CACCACACGGAAGATTTCAAACACGCCAAGACAGGGCAGATGGCCGACAT
CATAGATGTTACAGGTGTGCCTGAAGCACAAGGGTCGCCTCCACACCGTG
AAGATACCCCGATGGATACGGAAACACACCGGGACGACGAGGGCAGGTCC
AACGTGGAGAAGGTTGCAAGCTCCCGGCCGGCGGGTTTCAAGCCAAGACG
CAATTTATCATGCTGGCTCTATAAGCATGGAAATTGGCACCGGCACGACG
ACAAGGCGCACTCTCTTTGCCCACATTGTTTGCAGATAATTCCCTGCAAA
AACTCACAGACGACGAGCATGTGGAGCCATATGGAGGTTCACCACACGGA
AGATTTCAAACACGCCAAGACAGGGCAG
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