mRNA_H-elongata_contig55947.13023.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55947.13023.1
Unique NamemRNA_H-elongata_contig55947.13023.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55947.13023.1 vs. uniprot
Match: D8LTJ5_ECTSI (HDc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTJ5_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 4.980e-36
Identity = 68/90 (75.56%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:    1 SGLDVDKLDYFQRDARNSVGERGLNIDRFIELARHVQPNMRMADDRNGEVHRMFCYPDKLWTEALGLFRTRMELHQHVYQHKGGKSVELM 270
            SGLDVDKLDYFQRDARNSVG+R +++DRFIELAR V P    A+D+ G   RM CYPDKLWTEALGLFR+RMELH  VYQH GGKSVELM
Sbjct:  269 SGLDVDKLDYFQRDARNSVGDRPMDLDRFIELAR-VLP----AEDQRGNRRRMICYPDKLWTEALGLFRSRMELHTLVYQHHGGKSVELM 353
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BLAST of mRNA_H-elongata_contig55947.13023.1 vs. uniprot
Match: H3GU84_PHYRM (HDc domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GU84_PHYRM)

HSP 1 Score: 78.6 bits (192), Expect = 4.990e-15
Identity = 38/90 (42.22%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    1 SGLDVDKLDYFQRDARNSVGERGLNIDRFIELARHVQPNMRMADDRNGEVHRMFCYPDKLWTEALGLFRTRMELHQHVYQHKGGKSVELM 270
            SGLDVDKLDYF RD+ ++  +   + D  I  AR +       D  + E H + C+P+KL  + +  FRTR ELHQ VYQH+G ++++ M
Sbjct:  309 SGLDVDKLDYFMRDSLHTGAKMSCDTDLLIRNARVL------VDREDPEEHMVVCFPEKLAGQIMQAFRTRYELHQSVYQHRGVRAIDYM 392
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BLAST of mRNA_H-elongata_contig55947.13023.1 vs. uniprot
Match: K3X7T5_GLOUD (HD domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7T5_GLOUD)

HSP 1 Score: 76.3 bits (186), Expect = 1.260e-14
Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:    1 SGLDVDKLDYFQRDARNSVGERGLNIDRFIELARHVQPNMRMADDRNGEVHRMFCYPDKLWTEALGLFRTRMELHQHVYQHKGGKSVELM 270
            SGLDVDKLDYF RDA ++  +   ++D  I  AR +       DD++G++    C+P+KL  + +  F TR +LHQ VYQHK  +++E M
Sbjct:  130 SGLDVDKLDYFMRDALHTGAKASCDVDLLIRNARVLVDR----DDKHGKM--AICFPEKLSGQVMQAFHTRFDLHQSVYQHKAIRAIEYM 213
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BLAST of mRNA_H-elongata_contig55947.13023.1 vs. uniprot
Match: A0A6A4ALH8_9STRA (HD domain-containing protein (Fragment) n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4ALH8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.720e-14
Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    1 SGLDVDKLDYFQRDARNSVGERGLNIDRFIELARHVQPNMRMADDRNGEVHRMFCYPDKLWTEALGLFRTRMELHQHVYQHKGGKSVELM 270
            SGLDVDKLDYF RD+ ++  +   + D  I  AR +       D  + + + + C+P+KL  + +  FRTR ELHQ VYQHKG ++++ M
Sbjct:  129 SGLDVDKLDYFMRDSLHTGAKMSCDTDLLIRNARVL------VDREDPDENMVVCFPEKLPGQIMQAFRTRYELHQSVYQHKGVRAIDYM 212
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BLAST of mRNA_H-elongata_contig55947.13023.1 vs. uniprot
Match: A0A6A4AUB3_9STRA (Uncharacterized protein (Fragment) n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4AUB3_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.280e-14
Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    1 SGLDVDKLDYFQRDARNSVGERGLNIDRFIELARHVQPNMRMADDRNGEVHRMFCYPDKLWTEALGLFRTRMELHQHVYQHKGGKSVELM 270
            SGLDVDKLDYF RD+ ++  +   + D  I  AR +       D  + + + + C+P+KL  + +  FRTR ELHQ VYQHKG ++++ M
Sbjct:   62 SGLDVDKLDYFMRDSLHTGAKMSCDTDLLIRNARVL------VDREDPDENMVVCFPEKLPGQIMQAFRTRYELHQSVYQHKGVRAIDYM 145
[Close]
BLAST of mRNA_H-elongata_contig55947.13023.1 vs. uniprot
Match: A0A329SE61_9STRA (HD domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SE61_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.370e-14
Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    1 SGLDVDKLDYFQRDARNSVGERGLNIDRFIELARHVQPNMRMADDRNGEVHRMFCYPDKLWTEALGLFRTRMELHQHVYQHKGGKSVELM 270
            SGLDVDKLDYF RD+ ++  +   + D  I  AR +       D  + E + + C+P+KL  + +  FRTR ELHQ VYQH+G ++++ M
Sbjct:  308 SGLDVDKLDYFMRDSLHTGAKMSCDTDLLIRNARVL------VDREDSEENMVVCFPEKLAGQIMQAFRTRYELHQSVYQHRGVRAIDYM 391
[Close]
BLAST of mRNA_H-elongata_contig55947.13023.1 vs. uniprot
Match: G5AFW9_PHYSP (HDc domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AFW9_PHYSP)

HSP 1 Score: 76.6 bits (187), Expect = 2.370e-14
Identity = 38/90 (42.22%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    1 SGLDVDKLDYFQRDARNSVGERGLNIDRFIELARHVQPNMRMADDRNGEVHRMFCYPDKLWTEALGLFRTRMELHQHVYQHKGGKSVELM 270
            SGLDVDKLDYF RD+ ++  +   + D  I  AR +       D  + E + + C+P+KL  + +  FRTR ELHQ VYQHKG ++++ M
Sbjct:  309 SGLDVDKLDYFMRDSLHTGAKMSCDTDLLIRNARVL------VDREDPEENMVVCFPEKLPGQIMQAFRTRYELHQSVYQHKGVRAIDYM 392
[Close]
BLAST of mRNA_H-elongata_contig55947.13023.1 vs. uniprot
Match: M4BQJ5_HYAAE (HDc domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BQJ5_HYAAE)

HSP 1 Score: 76.3 bits (186), Expect = 3.140e-14
Identity = 36/90 (40.00%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    1 SGLDVDKLDYFQRDARNSVGERGLNIDRFIELARHVQPNMRMADDRNGEVHRMFCYPDKLWTEALGLFRTRMELHQHVYQHKGGKSVELM 270
            SGLDVDKLDYF RD+ ++  +   + D  I  AR +       D  + + + + C+P+KL  + +  FRTR ELHQ VYQH+G ++++ M
Sbjct:  285 SGLDVDKLDYFMRDSLHTGAKMSCDTDLLIRNARVL------VDQEDPDKNMVICFPEKLAGQVMQAFRTRYELHQSVYQHRGVRAIDYM 368
[Close]
BLAST of mRNA_H-elongata_contig55947.13023.1 vs. uniprot
Match: A0A6A3GEJ4_9STRA (HD domain-containing protein (Fragment) n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3GEJ4_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 4.140e-14
Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    1 SGLDVDKLDYFQRDARNSVGERGLNIDRFIELARHVQPNMRMADDRNGEVHRMFCYPDKLWTEALGLFRTRMELHQHVYQHKGGKSVELM 270
            SGLDVDKLDYF RD+ ++  +   + D  I  AR +       D  + + + + C+P+KL  + +  FRTR ELHQ VYQHKG ++++ M
Sbjct:  130 SGLDVDKLDYFMRDSLHTGAKMSCDTDLLIRNARVL------VDREDPDENMVVCFPEKLPGQIMQAFRTRYELHQSVYQHKGVRAIDYM 213
[Close]
BLAST of mRNA_H-elongata_contig55947.13023.1 vs. uniprot
Match: A0A8K1C7A9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7A9_PYTOL)

HSP 1 Score: 75.9 bits (185), Expect = 4.420e-14
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:    1 SGLDVDKLDYFQRDARNSVGERGLNIDRFIELARHVQPNMRMADDRNGEVHRM-FCYPDKLWTEALGLFRTRMELHQHVYQHKGGKSVELM 270
            SGLDVDKLDYF RDAR++  +   +++  I+       N R+  DR+    ++  C+P+KL  + +  FRTR ELHQ VYQHK  ++ E M
Sbjct:  306 SGLDVDKLDYFLRDARHTGAKASCDVELIIQ-------NARVLVDRDDPERKLSICFPEKLAGKIMQAFRTRFELHQAVYQHKNIRAAEYM 389
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55947.13023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTJ5_ECTSI4.980e-3675.56HDc domain-containing protein n=2 Tax=Ectocarpus T... [more]
H3GU84_PHYRM4.990e-1542.22HDc domain-containing protein n=1 Tax=Phytophthora... [more]
K3X7T5_GLOUD1.260e-1442.22HD domain-containing protein n=1 Tax=Globisporangi... [more]
A0A6A4ALH8_9STRA1.720e-1441.11HD domain-containing protein (Fragment) n=1 Tax=Ph... [more]
A0A6A4AUB3_9STRA2.280e-1441.11Uncharacterized protein (Fragment) n=3 Tax=Phytoph... [more]
A0A329SE61_9STRA2.370e-1441.11HD domain-containing protein n=1 Tax=Phytophthora ... [more]
G5AFW9_PHYSP2.370e-1442.22HDc domain-containing protein n=1 Tax=Phytophthora... [more]
M4BQJ5_HYAAE3.140e-1440.00HDc domain-containing protein n=1 Tax=Hyaloperonos... [more]
A0A6A3GEJ4_9STRA4.140e-1441.11HD domain-containing protein (Fragment) n=3 Tax=Ph... [more]
A0A8K1C7A9_PYTOL4.420e-1442.86Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55947contigH-elongata_contig55947:1981..3217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.0
Seed ortholog evalue9e-30
Seed eggNOG ortholog2880.D8LTJ5
KEGG koko:K12830
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008832,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016788,GO:0016793,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576
EggNOG free text desc.dGTPase activity
EggNOG OGsCOG1078@1,KOG2681@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03021,ko03036,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHD/PDEase domain
Ec32 orthologEc-02_005840.1
Exons3
Model size274
Cds size273
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55947.13023.1prot_H-elongata_contig55947.13023.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55947 1981..3217 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930910.5400946-CDS-H-elongata_contig55947:1980..21181622930910.5400946-CDS-H-elongata_contig55947:1980..2118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55947 1981..2118 +
1691679621.1485655-CDS-H-elongata_contig55947:1980..21181691679621.1485655-CDS-H-elongata_contig55947:1980..2118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55947 1981..2118 +
1622930910.570393-CDS-H-elongata_contig55947:2485..25631622930910.570393-CDS-H-elongata_contig55947:2485..2563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55947 2486..2563 +
1691679621.1618037-CDS-H-elongata_contig55947:2485..25631691679621.1618037-CDS-H-elongata_contig55947:2485..2563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55947 2486..2563 +
1622930910.5866735-CDS-H-elongata_contig55947:3160..32171622930910.5866735-CDS-H-elongata_contig55947:3160..3217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55947 3161..3217 +
1691679621.1724741-CDS-H-elongata_contig55947:3160..32171691679621.1724741-CDS-H-elongata_contig55947:3160..3217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55947 3161..3217 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55947.13023.1

>prot_H-elongata_contig55947.13023.1 ID=prot_H-elongata_contig55947.13023.1|Name=mRNA_H-elongata_contig55947.13023.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
SGLDVDKLDYFQRDARNSVGERGLNIDRFIELARHVQPNMRMADDRNGEV
HRMFCYPDKLWTEALGLFRTRMELHQHVYQHKGGKSVELM*
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mRNA from alignment at H-elongata_contig55947:1981..3217+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55947.13023.1 ID=mRNA_H-elongata_contig55947.13023.1|Name=mRNA_H-elongata_contig55947.13023.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1237bp|location=Sequence derived from alignment at H-elongata_contig55947:1981..3217+ (Himanthalia elongata Himel1 dioecious)
TCGGGTCTTGATGTGGACAAGCTGGACTACTTCCAGAGGGACGCACGGAA
CTCGGTCGGGGAGCGGGGGCTGAATATCGATCGTTTCATCGAGCTTGCCA
GGCACGTTCAACCGAATATGAGGATGGCGGATGATCGAGTAGCTTATTTT
TCCTCCGCTTTACGCGAACCGGTCTTTCTAGTCGACGGGCATATCTTCTG
AGCTCTCAGCGACCAGAGCAGTGATATACGAAGTACCACGGCAAAACGCG
CTGCTCTCAGCCCGCCATGCCCGTACTCGCACCATCCCTTGTGGTATAAA
CGACCCTGCTGCCGCGGTACAATATATGTTGCTTGCTTTCTCTCTTTCTC
ATATATAGAGGATGTATACATCTGTGTAGGTGGTGTAGAGGAGAAATGTA
AAACGTGCGTATGATGACGTTTATCGTCTCTCGTGTGCCTCACCCTGTCC
CCGCGTGTGGTGCCGGGCGAATGGCGTATGCAGAGTTTTACCAGCCGCCG
ATGAGAACGGGGAGGTTCACCGGATGTTCTGCTACCCCGATAAGCTCTGG
ACGGAGGCGCTGGGGCTGTTCCGGACCCGGATGGTGAGGCGGTGCGCTCC
GCAAGAACCAACGGCTAAAAATGTTATATTCTAGTCGTTGTTGGGTTTAT
CTTGGAAGGCCGGAAAGGATGTCAGCGGGAATCTAAGTGTCGGCTCGCGT
GCCCAATGCCTTACAATGTTTTATTTTTCTTTCTTTCTTTTTTGTCTGTA
GGCGGATAACTATAGCGAGATAGCAGGGGATGGCGGGATGGGTTGGGTTA
GGTAGCCGGTCGATCGAAAATGTGTAAGATATAAAGGCTTTATAGATACG
TATAAATATATCTATATAAAGTTTATTTTCGAAGTATACGCAAAACACAG
ACAAGCGCGCGCGCACATGAACACCTGCGCGAGTTTCCCTCAGGACGGCG
CACGTGTTTGGGTGCTTAGGAGGAAGAGTCTTGTTTCCAAGTTTTGCGCC
GCTTTTAAACAATAACATCACGCCTTTTTGAGGTAGGTCGACATGATGAC
GTCATCAAATAAGGGGGAGATATTCTTTGTGGCCTCCGACTTCCGACCTC
CGACAGCTGCAGTATCCCCCCTTCCTCCCCCACACACACATACGCGCACA
ATACGTGCTTTAACGGGCTGGTGATGACAGGAACTGCATCAACACGTATA
CCAACACAAGGGCGGAAAGTCGGTGGAGCTCATGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig55947:1981..3217+

>mRNA_H-elongata_contig55947.13023.1 ID=mRNA_H-elongata_contig55947.13023.1|Name=mRNA_H-elongata_contig55947.13023.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig55947:1981..3217+ (Himanthalia elongata Himel1 dioecious)
TCGGGTCTTGATGTGGACAAGCTGGACTACTTCCAGAGGGACGCACGGAA
CTCGGTCGGGGAGCGGGGGCTGAATATCGATCGTTTCATCGAGCTTGCCA
GGCACGTTCAACCGAATATGAGGATGGCGGATGATCGATCGGGTCTTGAT
GTGGACAAGCTGGACTACTTCCAGAGGGACGCACGGAACTCGGTCGGGGA
GCGGGGGCTGAATATCGATCGTTTCATCGAGCTTGCCAGGCACGTTCAAC
CGAATATGAGGATGGCGGATGATCGAAACGGGGAGGTTCACCGGATGTTC
TGCTACCCCGATAAGCTCTGGACGGAGGCGCTGGGGCTGTTCCGGACCCG
GATGAACGGGGAGGTTCACCGGATGTTCTGCTACCCCGATAAGCTCTGGA
CGGAGGCGCTGGGGCTGTTCCGGACCCGGATGGAACTGCATCAACACGTA
TACCAACACAAGGGCGGAAAGTCGGTGGAGCTCATGTGAGAACTGCATCA
ACACGTATACCAACACAAGGGCGGAAAGTCGGTGGAGCTCATGTGA
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