mRNA_H-elongata_contig55923.13020.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55923.13020.1
Unique NamemRNA_H-elongata_contig55923.13020.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55923.13020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55923contigH-elongata_contig55923:1450..1922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size473
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55923.13020.1prot_H-elongata_contig55923.13020.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55923 1542..1895 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930910.2168443-UTR-H-elongata_contig55923:1449..15411622930910.2168443-UTR-H-elongata_contig55923:1449..1541Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55923 1450..1541 +
1691679620.9999201-UTR-H-elongata_contig55923:1449..15411691679620.9999201-UTR-H-elongata_contig55923:1449..1541Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55923 1450..1541 +
1622930910.2564006-UTR-H-elongata_contig55923:1895..19221622930910.2564006-UTR-H-elongata_contig55923:1895..1922Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55923 1896..1922 +
1691679621.0256562-UTR-H-elongata_contig55923:1895..19221691679621.0256562-UTR-H-elongata_contig55923:1895..1922Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55923 1896..1922 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930910.2350614-CDS-H-elongata_contig55923:1541..18951622930910.2350614-CDS-H-elongata_contig55923:1541..1895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55923 1542..1895 +
1691679621.015383-CDS-H-elongata_contig55923:1541..18951691679621.015383-CDS-H-elongata_contig55923:1541..1895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55923 1542..1895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55923.13020.1

>prot_H-elongata_contig55923.13020.1 ID=prot_H-elongata_contig55923.13020.1|Name=mRNA_H-elongata_contig55923.13020.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
MEREACACDHGLEISDLCAEIIIIIIFHYYHRYQRSTSFHNRQGMKFAFL
PELVPAISTFISRLATLYLFTILLVWISFFPIASTILYTIYIIEPSTGNP
EVASEKRTDMPKYLTIS*
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mRNA from alignment at H-elongata_contig55923:1450..1922+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55923.13020.1 ID=mRNA_H-elongata_contig55923.13020.1|Name=mRNA_H-elongata_contig55923.13020.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=473bp|location=Sequence derived from alignment at H-elongata_contig55923:1450..1922+ (Himanthalia elongata Himel1 dioecious)
CGTTTGAAAAACTTTTTTTGCAGTTTTTTCCTGTAGTCACAAACTAAATT
GTGACTACGTAGTCACAGTTATCACTCCCCTGTAGTGATGGTATGGAAAG
GGAAGCCTGCGCCTGTGACCACGGGCTCGAGATATCCGACTTATGTGCGG
AAATAATAATAATAATAATTTTTCATTACTATCATAGGTACCAACGGTCT
ACTTCTTTTCATAACAGGCAAGGCATGAAATTTGCTTTTTTGCCCGAGCT
TGTTCCTGCGATTTCTACTTTTATTAGTCGTCTTGCTACACTGTACCTTT
TCACGATTTTATTAGTTTGGATATCGTTTTTTCCGATTGCCAGTACAATC
TTATACACTATATATATAATAGAGCCCTCTACAGGTAACCCCGAGGTAGC
CTCTGAGAAACGGACTGATATGCCTAAATATCTAACCATTTCATGAGCAA
CCACTTTCCCCCTGCTGATCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig55923:1450..1922+

>mRNA_H-elongata_contig55923.13020.1 ID=mRNA_H-elongata_contig55923.13020.1|Name=mRNA_H-elongata_contig55923.13020.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig55923:1450..1922+ (Himanthalia elongata Himel1 dioecious)
ATGGAAAGGGAAGCCTGCGCCTGTGACCACGGGCTCGAGATATCCGACTT
ATGTGCGGAAATAATAATAATAATAATTTTTCATTACTATCATAGGTACC
AACGGTCTACTTCTTTTCATAACAGGCAAGGCATGAAATTTGCTTTTTTG
CCCGAGCTTGTTCCTGCGATTTCTACTTTTATTAGTCGTCTTGCTACACT
GTACCTTTTCACGATTTTATTAGTTTGGATATCGTTTTTTCCGATTGCCA
GTACAATCTTATACACTATATATATAATAGAGCCCTCTACAGGTAACCCC
GAGGTAGCCTCTGAGAAACGGACTGATATGCCTAAATATCTAACCATTTC
ATGAATGGAAAGGGAAGCCTGCGCCTGTGACCACGGGCTCGAGATATCCG
ACTTATGTGCGGAAATAATAATAATAATAATTTTTCATTACTATCATAGG
TACCAACGGTCTACTTCTTTTCATAACAGGCAAGGCATGAAATTTGCTTT
TTTGCCCGAGCTTGTTCCTGCGATTTCTACTTTTATTAGTCGTCTTGCTA
CACTGTACCTTTTCACGATTTTATTAGTTTGGATATCGTTTTTTCCGATT
GCCAGTACAATCTTATACACTATATATATAATAGAGCCCTCTACAGGTAA
CCCCGAGGTAGCCTCTGAGAAACGGACTGATATGCCTAAATATCTAACCA
TTTCATGA
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