mRNA_H-elongata_contig559.13018.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig559.13018.1 vs. uniprot
Match: D7G1I5_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I5_ECTSI) HSP 1 Score: 150 bits (380), Expect = 7.720e-39 Identity = 78/89 (87.64%), Postives = 84/89 (94.38%), Query Frame = 2
Query: 599 EMRGDAFAHFGNAAVVQSIVDKLPDIAREIAAPLSRTEKQMVFISGNGGGAGSRLTQDVGNILSQLPVTVEALTGVDITKGLERYLGEG 865
E+RGDAF HFGNAAVVQSIVDKLPDIAREIAAPL++T+K MVFI+G GGGAGSRLTQDVGNIL+QLP TVEALTGVDITKGLERYLG G
Sbjct: 327 ELRGDAFQHFGNAAVVQSIVDKLPDIAREIAAPLAKTDK-MVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTGVDITKGLERYLGGG 414
BLAST of mRNA_H-elongata_contig559.13018.1 vs. uniprot
Match: D7G1I4_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I4_ECTSI) HSP 1 Score: 145 bits (365), Expect = 1.850e-36 Identity = 73/92 (79.35%), Postives = 86/92 (93.48%), Query Frame = 2
Query: 590 QVLEMRGDAFAHFGNAAVVQSIVDKLPDIAREIAAPLSRTEKQMVFISGNGGGAGSRLTQDVGNILSQLPVTVEALTGVDITKGLERYLGEG 865
+VLE+RGD+F HFGNAA+VQSIVD+LPDIAREIAAPL++T+K MVFI+G GGGAGSRLTQDVG+IL+QLP TVEALTGVDITKGL+R +G G
Sbjct: 346 KVLELRGDSFQHFGNAAIVQSIVDRLPDIAREIAAPLAKTDK-MVFIAGEGGGAGSRLTQDVGSILAQLPETVEALTGVDITKGLDRMVGSG 436
BLAST of mRNA_H-elongata_contig559.13018.1 vs. uniprot
Match: A0A6H5K3X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3X4_9PHAE) HSP 1 Score: 129 bits (325), Expect = 2.380e-33 Identity = 67/78 (85.90%), Postives = 75/78 (96.15%), Query Frame = 2
Query: 590 QVLEMRGDAFAHFGNAAVVQSIVDKLPDIAREIAAPLSRTEKQMVFISGNGGGAGSRLTQDVGNILSQLPVTVEALTG 823
QVLE+RGDAF HFGNAAVVQSIVDKLPDIAREIAAPL++T+K MVFI+G+GGGAGSRLTQDVGNIL+QLP TV+ALTG
Sbjct: 97 QVLELRGDAFQHFGNAAVVQSIVDKLPDIAREIAAPLAKTDK-MVFIAGDGGGAGSRLTQDVGNILAQLPETVQALTG 173
BLAST of mRNA_H-elongata_contig559.13018.1 vs. uniprot
Match: A0A835YT26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT26_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 1.550e-16 Identity = 45/84 (53.57%), Postives = 65/84 (77.38%), Query Frame = 2
Query: 605 RGDAFAHFGNAAVVQSIVDKLPDIAREIAAPLSRTEKQMVFISGNGGGAGSRLTQDVGNILSQLPVTVEALTGVDITKGLERYL 856
R DA+A FG AA+ I+DKLP+IA+ IAAPL++T+K M+F+S +G AGS+LT D+ +++QL V+ LTGVDIT+GL+R +
Sbjct: 317 RADAYAAFGQAAITSQIIDKLPEIAKAIAAPLAKTDK-MIFVSSDGA-AGSKLTSDITTMMAQLGPAVQGLTGVDITQGLQRLV 398
BLAST of mRNA_H-elongata_contig559.13018.1 vs. uniprot
Match: A0A7C7QQR8_9CHLR (Flotillin family protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C7QQR8_9CHLR) HSP 1 Score: 80.9 bits (198), Expect = 1.470e-15 Identity = 37/84 (44.05%), Postives = 60/84 (71.43%), Query Frame = 2
Query: 590 QVLEMRGDAFAHFGNAAVVQSIVDKLPDIAREIAAPLSRTEKQMVFISGNGGGAG-SRLTQDVGNILSQLPVTVEALTGVDITK 838
+ + + +A+ + AA++Q ++D LP +A IA PL++TE+ ++ +G GAG SR+TQDV NI++Q+P TVEALTGVD+ +
Sbjct: 4 EAMSKKAEAWQQYNQAAIIQQLIDSLPKVAAAIAEPLAKTERIVIINAGGDSGAGASRITQDVANIIAQVPATVEALTGVDLVE 87
BLAST of mRNA_H-elongata_contig559.13018.1 vs. uniprot
Match: A0A535IAW1_9CHLR (Flotillin family protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535IAW1_9CHLR) HSP 1 Score: 80.5 bits (197), Expect = 2.160e-15 Identity = 38/84 (45.24%), Postives = 61/84 (72.62%), Query Frame = 2
Query: 590 QVLEMRGDAFAHFGNAAVVQSIVDKLPDIAREIAAPLSRTEKQMVFISGNGGGAG---SRLTQDVGNILSQLPVTVEALTGVDI 832
+ + + A+ ++ AA++Q +VDK+P IA I+ PL++T++ ++ +G+G G G SRLTQD+ NI+SQ+P TVEALTGVD+
Sbjct: 9 EAMTKKAAAWQNYNEAAIIQQLVDKMPQIAEAISKPLAQTDRIVIISNGDGNGHGAGASRLTQDITNIISQVPATVEALTGVDV 92
BLAST of mRNA_H-elongata_contig559.13018.1 vs. uniprot
Match: A0A7C0TW44_9CHLR (Flotillin family protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C0TW44_9CHLR) HSP 1 Score: 84.0 bits (206), Expect = 1.600e-14 Identity = 36/84 (42.86%), Postives = 60/84 (71.43%), Query Frame = 2
Query: 596 LEMRGDAFAHFGNAAVVQSIVDKLPDIAREIAAPLSRTEKQMVFISGNGGGAGSRLTQDVGNILSQLPVTVEALTGVDITKGLE 847
++ + +A+ + AAV+Q ++D LP +A+ +A PLSRTE+ +V SG SR+TQDV N+++Q+P T+EALTG+D+ K ++
Sbjct: 388 MKEKAEAWQEYNQAAVIQQLIDALPQVAKAVAEPLSRTERIVVINSGGDSAGASRVTQDVANVIAQVPATIEALTGLDLIKAIQ 471
BLAST of mRNA_H-elongata_contig559.13018.1 vs. uniprot
Match: K2BJP1_9BACT (PHB domain-containing protein n=4 Tax=Bacteria TaxID=2 RepID=K2BJP1_9BACT) HSP 1 Score: 84.0 bits (206), Expect = 1.660e-14 Identity = 40/94 (42.55%), Postives = 66/94 (70.21%), Query Frame = 2
Query: 596 LEMRGDAFAHFGNAAVVQSIVDKLPDIAREIAAPLSRTEKQMVFISGNGGGAGSRLTQDVGNILSQLPVTVEALTGVDITKGLERYLGEGDTSN 877
+ ++ A+ + +AA++Q +++KLP++AR ++ PLSRTEK ++ SGNG G S++T++V NI+SQLP VEALTGV + ++R G +N
Sbjct: 408 MTVKAAAWQKYNDAAIIQMVIEKLPELARAVSEPLSRTEKIIMINSGNGEGGASKMTREVLNIISQLPPAVEALTGVKLENIIKRLEGTETANN 501
BLAST of mRNA_H-elongata_contig559.13018.1 vs. uniprot
Match: A0A847FSX0_9CHLR (Flotillin family protein n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A847FSX0_9CHLR) HSP 1 Score: 83.6 bits (205), Expect = 2.160e-14 Identity = 36/90 (40.00%), Postives = 63/90 (70.00%), Query Frame = 2
Query: 596 LEMRGDAFAHFGNAAVVQSIVDKLPDIAREIAAPLSRTEKQMVFISGNGGGAGSRLTQDVGNILSQLPVTVEALTGVDITKGLERYLGEG 865
+E + A+ + AA++Q +++ LP++A IA PL++T++ ++ SG+G G S+LT DV NI++Q+P T+EALTG+D+ + L+ G G
Sbjct: 395 MEKKAAAWQQYNQAAIIQQLIEALPEVAAAIAQPLAQTDRMVIINSGDGAGGASKLTADVTNIIAQVPATIEALTGIDLEQALKSLPGIG 484
BLAST of mRNA_H-elongata_contig559.13018.1 vs. uniprot
Match: U2D651_9FIRM (SPFH/Band 7/PHB domain protein n=2 Tax=Eubacteriales TaxID=186802 RepID=U2D651_9FIRM) HSP 1 Score: 81.6 bits (200), Expect = 9.950e-14 Identity = 44/89 (49.44%), Postives = 64/89 (71.91%), Query Frame = 2
Query: 605 RGDAFAHFGNAAVVQSIVDKLPDIAREIAAPLSRTEKQMVFISGNGGGAG-SRLTQDVGNILSQLPVTVEALTGVDITKGLERYLGEGD 868
+ +AF + +AA+ Q I++KLP+IA+ +A PLS+TEK ++ SGNG G G S++T V +I+SQLP TVEALTGV+I L + +G D
Sbjct: 414 KAEAFKLYNDAAMTQMIIEKLPEIAKAVAEPLSKTEKIVIVDSGNGDGKGASKVTGYVTDIMSQLPETVEALTGVNIMDLLNKKIGNED 502 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig559.13018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig559.13018.1 >prot_H-elongata_contig559.13018.1 ID=prot_H-elongata_contig559.13018.1|Name=mRNA_H-elongata_contig559.13018.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp MRGDAFAHFGNAAVVQSIVDKLPDIAREIAAPLSRTEKQMVFISGNGGGAback to top mRNA from alignment at H-elongata_contig559:1680..3199+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig559.13018.1 ID=mRNA_H-elongata_contig559.13018.1|Name=mRNA_H-elongata_contig559.13018.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1520bp|location=Sequence derived from alignment at H-elongata_contig559:1680..3199+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig559:1680..3199+ >mRNA_H-elongata_contig559.13018.1 ID=mRNA_H-elongata_contig559.13018.1|Name=mRNA_H-elongata_contig559.13018.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig559:1680..3199+ (Himanthalia elongata Himel1 dioecious)back to top |