mRNA_H-elongata_contig55877.13016.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55877.13016.1
Unique NamemRNA_H-elongata_contig55877.13016.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55877.13016.1 vs. uniprot
Match: D8LHW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHW4_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 6.990e-36
Identity = 70/82 (85.37%), Postives = 76/82 (92.68%), Query Frame = 1 
Query:    1 AQPHLRQGMEKLNRIQSKMHEVALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGSIDVEAFKIVYVAPMKALVQEV 246
            AQP  + GMEKLNRIQSKM E ALLSPENLLLCAPTGAGKTNVAL+ MLHEIGQHR+EDG+IDV++FKIVYVAPMKALVQEV
Sbjct:  518 AQPAFK-GMEKLNRIQSKMQEAALLSPENLLLCAPTGAGKTNVALMTMLHEIGQHRKEDGTIDVDSFKIVYVAPMKALVQEV 598
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BLAST of mRNA_H-elongata_contig55877.13016.1 vs. uniprot
Match: A0A7S0Z8P7_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0Z8P7_9CHLO)

HSP 1 Score: 122 bits (305), Expect = 2.390e-30
Identity = 57/76 (75.00%), Postives = 68/76 (89.47%), Query Frame = 1 
Query:   19 QGMEKLNRIQSKMHEVALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGSIDVEAFKIVYVAPMKALVQEV 246
            +GM+ LNRIQS+++E ALLSPEN+LLCAPTGAGKTNVA++ +LHE+G HRR DGSID  AFKIVYVAPMKALV E+
Sbjct:  498 EGMKSLNRIQSRVYECALLSPENMLLCAPTGAGKTNVAMMTILHEVGLHRRRDGSIDTSAFKIVYVAPMKALVAEI 573
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BLAST of mRNA_H-elongata_contig55877.13016.1 vs. uniprot
Match: A0A454XRE1_OSTTA (Sec63 Brl domain-domain-containing protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A454XRE1_OSTTA)

HSP 1 Score: 121 bits (303), Expect = 4.450e-30
Identity = 56/76 (73.68%), Postives = 68/76 (89.47%), Query Frame = 1 
Query:   19 QGMEKLNRIQSKMHEVALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGSIDVEAFKIVYVAPMKALVQEV 246
            +GM+ LNR+QS+++E ALLSPEN+LLCAPTGAGKTNVA+L +LHEIG HRR DG++D  AFKIVYVAPMKALV E+
Sbjct:  491 EGMKSLNRVQSRVYECALLSPENMLLCAPTGAGKTNVAVLTILHEIGLHRRRDGTVDTSAFKIVYVAPMKALVSEI 566
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BLAST of mRNA_H-elongata_contig55877.13016.1 vs. uniprot
Match: A4S4L6_OSTLU (Uncharacterized protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4S4L6_OSTLU)

HSP 1 Score: 120 bits (301), Expect = 8.280e-30
Identity = 59/82 (71.95%), Postives = 70/82 (85.37%), Query Frame = 1 
Query:    1 AQPHLRQGMEKLNRIQSKMHEVALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGSIDVEAFKIVYVAPMKALVQEV 246
            AQP   +GM+ LNRIQS+++E ALLSPEN+LLCAPTGAGKTN A+L +LHE+G HRR DGS+D  AFKIVYVAPMKALV E+
Sbjct:  486 AQPAF-EGMKTLNRIQSRVYECALLSPENMLLCAPTGAGKTNCAMLTILHEVGLHRRRDGSVDTSAFKIVYVAPMKALVAEI 566
[Close]
BLAST of mRNA_H-elongata_contig55877.13016.1 vs. uniprot
Match: C1N183_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N183_MICPC)

HSP 1 Score: 120 bits (300), Expect = 1.130e-29
Identity = 58/80 (72.50%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:   22 GMEKLNRIQSKMHEVALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGSIDVEAFKIVYVAPMKALVQE-VSSLG 258
            GM+ LNR+QS+++E A+LSPENLLLCAPTGAGKTNVA+L +LHE+  HRR+DGS+D+ AFKIVYVAPMKALV E V +LG
Sbjct:  525 GMKSLNRVQSQVYETAMLSPENLLLCAPTGAGKTNVAMLTILHELALHRRQDGSLDLSAFKIVYVAPMKALVAEMVGNLG 604
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BLAST of mRNA_H-elongata_contig55877.13016.1 vs. uniprot
Match: A0A7S0GP72_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GP72_MICPS)

HSP 1 Score: 119 bits (298), Expect = 2.100e-29
Identity = 58/80 (72.50%), Postives = 70/80 (87.50%), Query Frame = 1 
Query:   22 GMEKLNRIQSKMHEVALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGSIDVEAFKIVYVAPMKALVQE-VSSLG 258
            GM+ LNR+QS+++E A+LSPEN+LLCAPTGAGKTNVA+L +LHEIG HRR DGS++  AFKIVYVAPMKALV E V +LG
Sbjct:  521 GMKTLNRVQSQVYETAMLSPENMLLCAPTGAGKTNVAMLTILHEIGSHRRPDGSLNTNAFKIVYVAPMKALVAEMVGNLG 600
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BLAST of mRNA_H-elongata_contig55877.13016.1 vs. uniprot
Match: E1Z6L6_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z6L6_CHLVA)

HSP 1 Score: 118 bits (296), Expect = 3.890e-29
Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:    1 AQPHLRQGMEKLNRIQSKMHEVALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGSIDVEAFKIVYVAPMKALVQE-VSSLGR 261
            AQP  + GM+ LNRIQS++ + AL S EN+L+CAPTGAGKTNVA+LAMLHEIG HRREDGSID  AFKI+YVAPMKALV E V + G+
Sbjct:  234 AQPGFK-GMKSLNRIQSRVCDTALYSAENMLVCAPTGAGKTNVAMLAMLHEIGLHRREDGSIDTAAFKIIYVAPMKALVAEMVGNFGK 320
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BLAST of mRNA_H-elongata_contig55877.13016.1 vs. uniprot
Match: K8YVZ6_NANGC (Pre-mRNA-splicing helicase BRR2 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YVZ6_NANGC)

HSP 1 Score: 117 bits (293), Expect = 9.930e-29
Identity = 58/75 (77.33%), Postives = 66/75 (88.00%), Query Frame = 1 
Query:   19 QGMEKLNRIQSKMHEVALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGSIDVEAFKIVYVAPMKALVQE 243
            +GM  LNR+QSKM   AL S ENLLLCAPTGAGKTNVA+L +L+EIGQH REDGS+D++AFKIVYVAPMKALVQE
Sbjct:   70 EGMTMLNRVQSKMCSSALYSSENLLLCAPTGAGKTNVAMLCILNEIGQHLREDGSVDLDAFKIVYVAPMKALVQE 144
[Close]
BLAST of mRNA_H-elongata_contig55877.13016.1 vs. uniprot
Match: A0A7S0KUK6_MICPS (Hypothetical protein n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0KUK6_MICPS)

HSP 1 Score: 117 bits (293), Expect = 9.960e-29
Identity = 57/80 (71.25%), Postives = 69/80 (86.25%), Query Frame = 1 
Query:   22 GMEKLNRIQSKMHEVALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGSIDVEAFKIVYVAPMKALVQE-VSSLG 258
            GM+ LNR+QS+++  A+LSPEN+LLCAPTGAGKTNVA+L +LHEIG HR+ DG+ID  AFKIVYVAPMKALV E V +LG
Sbjct:  519 GMKSLNRVQSQVYNTAMLSPENMLLCAPTGAGKTNVAMLTILHEIGLHRKPDGTIDTSAFKIVYVAPMKALVAEMVGNLG 598
[Close]
BLAST of mRNA_H-elongata_contig55877.13016.1 vs. uniprot
Match: W7TFU8_9STRA (U5 small nuclear ribonucleoprotein helicase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFU8_9STRA)

HSP 1 Score: 117 bits (293), Expect = 9.960e-29
Identity = 58/75 (77.33%), Postives = 66/75 (88.00%), Query Frame = 1 
Query:   19 QGMEKLNRIQSKMHEVALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRREDGSIDVEAFKIVYVAPMKALVQE 243
            +GM  LNR+QSKM   AL S ENLLLCAPTGAGKTNVA+L +L+EIGQH REDGS+D++AFKIVYVAPMKALVQE
Sbjct:  509 EGMTMLNRVQSKMCSSALYSSENLLLCAPTGAGKTNVAMLCILNEIGQHLREDGSVDLDAFKIVYVAPMKALVQE 583
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55877.13016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHW4_ECTSI6.990e-3685.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0Z8P7_9CHLO2.390e-3075.00Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]
A0A454XRE1_OSTTA4.450e-3073.68Sec63 Brl domain-domain-containing protein n=2 Tax... [more]
A4S4L6_OSTLU8.280e-3071.95Uncharacterized protein n=2 Tax=Ostreococcus sp. '... [more]
C1N183_MICPC1.130e-2972.50Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7S0GP72_MICPS2.100e-2972.50Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
E1Z6L6_CHLVA3.890e-2970.45Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
K8YVZ6_NANGC9.930e-2977.33Pre-mRNA-splicing helicase BRR2 n=1 Tax=Nannochlor... [more]
A0A7S0KUK6_MICPS9.960e-2971.25Hypothetical protein n=2 Tax=Micromonas TaxID=3883... [more]
W7TFU8_9STRA9.960e-2977.33U5 small nuclear ribonucleoprotein helicase n=3 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55877contigH-elongata_contig55877:619..879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue5.1e-29
Seed eggNOG ortholog2880.D8LHW4
Preferred namebrr2
KEGG koko:K12854
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
GOsGO:0000375,GO:0000377,GO:0000388,GO:0000393,GO:0000398,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0034622,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0065003,GO:0070035,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:0140098,GO:1901360,GO:1990904
EggNOG free text desc.response to ionizing radiation
EggNOG OGsCOG1204@1,KOG0951@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionImmunoglobulin E-set
Ec32 orthologEc-18_000740.2
Exons1
Model size261
Cds size237
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930909.8215392-CDS-H-elongata_contig55877:618..8551622930909.8215392-CDS-H-elongata_contig55877:618..855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55877 619..855 -
1691679620.8289084-CDS-H-elongata_contig55877:618..8551691679620.8289084-CDS-H-elongata_contig55877:618..855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55877 619..855 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930909.8415473-UTR-H-elongata_contig55877:855..8791622930909.8415473-UTR-H-elongata_contig55877:855..879Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55877 856..879 -
1691679620.8427758-UTR-H-elongata_contig55877:855..8791691679620.8427758-UTR-H-elongata_contig55877:855..879Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55877 856..879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55877.13016.1prot_H-elongata_contig55877.13016.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55877 619..855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55877.13016.1

>prot_H-elongata_contig55877.13016.1 ID=prot_H-elongata_contig55877.13016.1|Name=mRNA_H-elongata_contig55877.13016.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
MEKLNRIQSKMHEVALLSPENLLLCAPTGAGKTNVALLAMLHEIGQHRRE
DGSIDVEAFKIVYVAPMKALVQEVSSLGR
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mRNA from alignment at H-elongata_contig55877:619..879-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55877.13016.1 ID=mRNA_H-elongata_contig55877.13016.1|Name=mRNA_H-elongata_contig55877.13016.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig55877:619..879- (Himanthalia elongata Himel1 dioecious)
GCTCAACCCCATCTCCGCCAGGGAATGGAGAAGCTTAATCGCATTCAGAG
CAAGATGCACGAGGTCGCGCTGCTTTCTCCTGAGAACCTGCTGCTGTGCG
CTCCTACCGGAGCCGGTAAGACGAACGTCGCCCTCCTGGCGATGCTCCAC
GAGATCGGCCAGCATCGGAGGGAGGACGGCAGCATCGACGTCGAAGCCTT
CAAAATCGTCTATGTGGCCCCCATGAAGGCTCTCGTGCAAGAGGTGAGTT
CTCTCGGGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig55877:619..879-

>mRNA_H-elongata_contig55877.13016.1 ID=mRNA_H-elongata_contig55877.13016.1|Name=mRNA_H-elongata_contig55877.13016.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig55877:619..879- (Himanthalia elongata Himel1 dioecious)
ATGGAGAAGCTTAATCGCATTCAGAGCAAGATGCACGAGGTCGCGCTGCT
TTCTCCTGAGAACCTGCTGCTGTGCGCTCCTACCGGAGCCGGTAAGACGA
ACGTCGCCCTCCTGGCGATGCTCCACGAGATCGGCCAGCATCGGAGGGAG
GACGGCAGCATCGACGTCGAAGCCTTCAAAATCGTCTATGTGGCCCCCAT
GAAGGCTCTCGTGCAAGAGGTGAGTTCTCTCGGGAGGATGGAGAAGCTTA
ATCGCATTCAGAGCAAGATGCACGAGGTCGCGCTGCTTTCTCCTGAGAAC
CTGCTGCTGTGCGCTCCTACCGGAGCCGGTAAGACGAACGTCGCCCTCCT
GGCGATGCTCCACGAGATCGGCCAGCATCGGAGGGAGGACGGCAGCATCG
ACGTCGAAGCCTTCAAAATCGTCTATGTGGCCCCCATGAAGGCTCTCGTG
CAAGAGGTGAGTTCTCTCGGGAGG
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