prot_H-elongata_contig55860.13015.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig55860.13015.1
Unique Nameprot_H-elongata_contig55860.13015.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length78
Homology
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BLAST of mRNA_H-elongata_contig55860.13015.1 vs. uniprot
Match: D8LN60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN60_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 3.440e-16
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 0 
Query:    1 MRRQLDCTTTTRLQAWAAEISREKRSLARDVKARAPPEVVGAHLRFLSRFGMWRDLLLDLGRLIASAQVEREAAVELL 78
            +R ++      RLQAWA  +++EKRSL  ++KARAP E+VGAHLRFLSR G W  LLLDL +++ +A  +RE AV LL
Sbjct:  614 LRERVTARMAKRLQAWATVLAKEKRSLVCEIKARAPAEIVGAHLRFLSRTGTWERLLLDLNQILETAVSQREQAVGLL 691
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BLAST of mRNA_H-elongata_contig55860.13015.1 vs. uniprot
Match: A0A6H5KNB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNB2_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.990e-14
Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = 0 
Query:    1 MRRQLDCTTTTRLQAWAAEISREKRSLARDVKARAPPEVVGAHLRFLSRFGMWRDLLLDLGRLIASAQVEREAAVELL 78
            +R ++      RLQAWA  ++ EKRSL  ++KARA  E+VGAHLRFLSR G W  LLLDL +++ +A  +RE A+ LL
Sbjct:  529 LRERVTARMAKRLQAWATVLAEEKRSLICEMKARAHAEIVGAHLRFLSRTGTWERLLLDLNQILQTAMSQREQAIGLL 606
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55860.13015.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN60_ECTSI3.440e-1653.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNB2_9PHAE1.990e-1451.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55860contigH-elongata_contig55860:331..564 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55860.13015.1mRNA_H-elongata_contig55860.13015.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig55860 331..570 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig55860.13015.1 ID=prot_H-elongata_contig55860.13015.1|Name=mRNA_H-elongata_contig55860.13015.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MRRQLDCTTTTRLQAWAAEISREKRSLARDVKARAPPEVVGAHLRFLSRF
GMWRDLLLDLGRLIASAQVEREAAVELL
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