mRNA_H-elongata_contig55860.13015.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55860.13015.1
Unique NamemRNA_H-elongata_contig55860.13015.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55860.13015.1 vs. uniprot
Match: D8LN60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN60_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 5.110e-16
Identity = 41/67 (61.19%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:   40 RLQAWAAEISREKRSLARDVKARAPPEVVGAHLRFLSRFGMWRDLLLDLGRLIASAQVEREAAVELL 240
            RLQAWA  +++EKRSL  ++KARAP E+VGAHLRFLSR G W  LLLDL +++ +A  +RE AV LL
Sbjct:  625 RLQAWATVLAKEKRSLVCEIKARAPAEIVGAHLRFLSRTGTWERLLLDLNQILETAVSQREQAVGLL 691
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BLAST of mRNA_H-elongata_contig55860.13015.1 vs. uniprot
Match: A0A6H5KNB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNB2_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.950e-14
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:   40 RLQAWAAEISREKRSLARDVKARAPPEVVGAHLRFLSRFGMWRDLLLDLGRLIASAQVEREAAVELL 240
            RLQAWA  ++ EKRSL  ++KARA  E+VGAHLRFLSR G W  LLLDL +++ +A  +RE A+ LL
Sbjct:  540 RLQAWATVLAEEKRSLICEMKARAHAEIVGAHLRFLSRTGTWERLLLDLNQILQTAMSQREQAIGLL 606
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55860.13015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN60_ECTSI5.110e-1661.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNB2_9PHAE2.950e-1458.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55860contigH-elongata_contig55860:331..570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size234
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930909.7253454-CDS-H-elongata_contig55860:330..5641622930909.7253454-CDS-H-elongata_contig55860:330..564Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55860 331..564 -
1691679620.8063986-CDS-H-elongata_contig55860:330..5641691679620.8063986-CDS-H-elongata_contig55860:330..564Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55860 331..564 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930909.7670753-UTR-H-elongata_contig55860:564..5701622930909.7670753-UTR-H-elongata_contig55860:564..570Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55860 565..570 -
1691679620.814782-UTR-H-elongata_contig55860:564..5701691679620.814782-UTR-H-elongata_contig55860:564..570Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55860 565..570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55860.13015.1prot_H-elongata_contig55860.13015.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55860 331..564 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55860.13015.1

>prot_H-elongata_contig55860.13015.1 ID=prot_H-elongata_contig55860.13015.1|Name=mRNA_H-elongata_contig55860.13015.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MRRQLDCTTTTRLQAWAAEISREKRSLARDVKARAPPEVVGAHLRFLSRF
GMWRDLLLDLGRLIASAQVEREAAVELL
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mRNA from alignment at H-elongata_contig55860:331..570-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55860.13015.1 ID=mRNA_H-elongata_contig55860.13015.1|Name=mRNA_H-elongata_contig55860.13015.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at H-elongata_contig55860:331..570- (Himanthalia elongata Himel1 dioecious)
TCCACGATGCGCCGCCAACTTGATTGTACTACTACCACCAGACTGCAGGC
CTGGGCCGCGGAGATTTCCCGAGAGAAGCGTTCCCTCGCCAGGGACGTCA
AAGCGCGAGCACCGCCCGAGGTAGTCGGCGCTCATTTGAGGTTCCTTTCA
CGATTCGGGATGTGGCGAGACCTTCTCCTCGACCTGGGACGTTTGATCGC
GTCGGCGCAGGTGGAACGAGAAGCAGCGGTTGAGCTCCTC
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Coding sequence (CDS) from alignment at H-elongata_contig55860:331..570-

>mRNA_H-elongata_contig55860.13015.1 ID=mRNA_H-elongata_contig55860.13015.1|Name=mRNA_H-elongata_contig55860.13015.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig55860:331..570- (Himanthalia elongata Himel1 dioecious)
ATGCGCCGCCAACTTGATTGTACTACTACCACCAGACTGCAGGCCTGGGC
CGCGGAGATTTCCCGAGAGAAGCGTTCCCTCGCCAGGGACGTCAAAGCGC
GAGCACCGCCCGAGGTAGTCGGCGCTCATTTGAGGTTCCTTTCACGATTC
GGGATGTGGCGAGACCTTCTCCTCGACCTGGGACGTTTGATCGCGTCGGC
GCAGGTGGAACGAGAAGCAGCGGTTGAGCTCCTCATGCGCCGCCAACTTG
ATTGTACTACTACCACCAGACTGCAGGCCTGGGCCGCGGAGATTTCCCGA
GAGAAGCGTTCCCTCGCCAGGGACGTCAAAGCGCGAGCACCGCCCGAGGT
AGTCGGCGCTCATTTGAGGTTCCTTTCACGATTCGGGATGTGGCGAGACC
TTCTCCTCGACCTGGGACGTTTGATCGCGTCGGCGCAGGTGGAACGAGAA
GCAGCGGTTGAGCTCCTC
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