mRNA_H-elongata_contig55847.13013.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig55847.13013.1 vs. uniprot
Match: D7FSR6_ECTSI (Triosephosphate isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSR6_ECTSI) HSP 1 Score: 127 bits (318), Expect = 1.840e-34 Identity = 61/81 (75.31%), Postives = 72/81 (88.89%), Query Frame = 1
Query: 1 VEVAVIPPHPFLVPVREQVESVSGSHVSVGAQNLYIENQGAFTGAISTGMLSSVGCTYVLCGHSERRVVFGDSDETVNQKV 243
VEVAVIPPHPFLVPV++QV+ V G+ V+VG+Q+LY E+ GAFTGA STGML+SVGC Y+LCGHSERR VFGDSDE VN+KV
Sbjct: 82 VEVAVIPPHPFLVPVKDQVDGVDGNKVAVGSQDLYTEDAGAFTGASSTGMLASVGCEYILCGHSERRSVFGDSDEMVNKKV 162
BLAST of mRNA_H-elongata_contig55847.13013.1 vs. uniprot
Match: A0A7Y5GW52_9DELT (Triosephosphate isomerase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y5GW52_9DELT) HSP 1 Score: 101 bits (251), Expect = 1.760e-24 Identity = 51/85 (60.00%), Postives = 64/85 (75.29%), Query Frame = 1
Query: 1 VEVAVIPPHPFLVPVREQVESVSGSHVSVGAQNLYIENQGAFTGAISTGMLSSVGCTYVLCGHSERRVVFGDSDETVNQKVTTTL 255
VE+AV PP PFLVPV ++ +GS + +GAQ+ Y+ ++GAFTGA+S ML SVGC Y+LCGHSERR VFGDSD TV KV T+
Sbjct: 36 VEIAVFPPFPFLVPVAAKL---AGSRIGLGAQDCYVADKGAFTGAVSAPMLRSVGCRYILCGHSERRSVFGDSDATVAAKVRRTV 117
BLAST of mRNA_H-elongata_contig55847.13013.1 vs. uniprot
Match: A0A835ZJI0_9STRA (Triosephosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJI0_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 7.480e-24 Identity = 47/81 (58.02%), Postives = 64/81 (79.01%), Query Frame = 1
Query: 1 VEVAVIPPHPFLVPVREQVESVSGSHVSVGAQNLYIENQGAFTGAISTGMLSSVGCTYVLCGHSERRVVFGDSDETVNQKV 243
VEV +IPP+PF+ PVR+ ++ GS ++VGAQN ++E++GAFTGA+ST ML SVGC YVLCGHSERR +F + + +N KV
Sbjct: 39 VEVGIIPPYPFVPPVRD---ALKGSGITVGAQNAFVEDKGAFTGAVSTTMLLSVGCEYVLCGHSERRTIFKEDNALINSKV 116
BLAST of mRNA_H-elongata_contig55847.13013.1 vs. uniprot
Match: K8Z6D5_NANGC (Triosephosphate isomerase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z6D5_NANGC) HSP 1 Score: 98.2 bits (243), Expect = 9.650e-24 Identity = 49/81 (60.49%), Postives = 65/81 (80.25%), Query Frame = 1
Query: 1 VEVAVIPPHPFLVPVREQVESVSGSHVSVGAQNLYIENQGAFTGAISTGMLSSVGCTYVLCGHSERRVVFGDSDETVNQKV 243
V+VAV+ P PFLVPV+E ++ GS+V +GAQ+LY E++GA+TGA S M+ SVG +VLCGHSERR +FGD+DETVN K+
Sbjct: 88 VDVAVVVPFPFLVPVKE---TLKGSNVLIGAQDLYTEDKGAYTGATSLPMIKSVGAQWVLCGHSERRALFGDTDETVNAKL 165
BLAST of mRNA_H-elongata_contig55847.13013.1 vs. uniprot
Match: A0A7S3PY81_9STRA (Triosephosphate isomerase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PY81_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 2.140e-23 Identity = 43/80 (53.75%), Postives = 63/80 (78.75%), Query Frame = 1
Query: 4 EVAVIPPHPFLVPVREQVESVSGSHVSVGAQNLYIENQGAFTGAISTGMLSSVGCTYVLCGHSERRVVFGDSDETVNQKV 243
EV + PPHPF V+ +VE + ++VGAQ+++ EN+GA+TG++S M+ S+GC YVLCGHSERR +FGDSD+++N+KV
Sbjct: 79 EVVIFPPHPFAARVKAEVEDIG---ITVGAQSVFYENKGAYTGSVSINMVKSIGCEYVLCGHSERRTLFGDSDDSINRKV 155
BLAST of mRNA_H-elongata_contig55847.13013.1 vs. uniprot
Match: A0A7S4ETX6_CHRCT (Triosephosphate isomerase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4ETX6_CHRCT) HSP 1 Score: 99.0 bits (245), Expect = 3.590e-23 Identity = 48/81 (59.26%), Postives = 63/81 (77.78%), Query Frame = 1
Query: 1 VEVAVIPPHPFLVPVREQVESVSGSHVSVGAQNLYIENQGAFTGAISTGMLSSVGCTYVLCGHSERRVVFGDSDETVNQKV 243
V+VAV P+PF+VPV+E +++GS V +GAQ+ Y E GA+T A+ST ML SVGC YVL GHSERR +FGD+DE +N+KV
Sbjct: 89 VDVAVCVPYPFIVPVKE---ALAGSKVGLGAQDCYYEESGAYTAAVSTSMLKSVGCDYVLAGHSERRAIFGDTDEDINKKV 166
BLAST of mRNA_H-elongata_contig55847.13013.1 vs. uniprot
Match: A0A4D9CPZ8_9STRA (Triosephosphate isomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CPZ8_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 6.720e-23 Identity = 49/81 (60.49%), Postives = 65/81 (80.25%), Query Frame = 1
Query: 1 VEVAVIPPHPFLVPVREQVESVSGSHVSVGAQNLYIENQGAFTGAISTGMLSSVGCTYVLCGHSERRVVFGDSDETVNQKV 243
V+VAV+ P PFLVPV+E ++ GS+V +GAQ+LY E++GA+TGA S M+ SVG +VLCGHSERR +FGD+DETVN K+
Sbjct: 88 VDVAVVVPFPFLVPVKE---TLKGSNVLIGAQDLYTEDKGAYTGATSLPMIKSVGAQWVLCGHSERRALFGDTDETVNAKL 165
BLAST of mRNA_H-elongata_contig55847.13013.1 vs. uniprot
Match: A0A835YXR2_9STRA (Triosephosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXR2_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 7.620e-23 Identity = 50/85 (58.82%), Postives = 63/85 (74.12%), Query Frame = 1
Query: 1 VEVAVIPPHPFLVPVREQVESVSGSHVSVGAQNLYIENQGAFTGAISTGMLSSVGCTYVLCGHSERRVVFGDSDETVNQKVTTTL 255
V V VIPP+PFLVPV+ + SG+ + +G QN Y E +GA+TGA+ST MLSSVGCTYVLCGHSERR VF + D +N+K+ L
Sbjct: 74 VGVVVIPPYPFLVPVQN---AASGA-LMIGGQNCYFEEKGAYTGAVSTAMLSSVGCTYVLCGHSERRTVFRNDDNAINRKLRAVL 154
BLAST of mRNA_H-elongata_contig55847.13013.1 vs. uniprot
Match: A0A7R9WFT5_9STRA (Triosephosphate isomerase n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WFT5_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 8.960e-23 Identity = 43/80 (53.75%), Postives = 62/80 (77.50%), Query Frame = 1
Query: 4 EVAVIPPHPFLVPVREQVESVSGSHVSVGAQNLYIENQGAFTGAISTGMLSSVGCTYVLCGHSERRVVFGDSDETVNQKV 243
EV + PPHPF+ V+++VE + ++VGAQ+++ E+ GA+TG++ST M+ SVGC YVLCGHSERR +F D DE +N+KV
Sbjct: 106 EVVIFPPHPFISRVKDKVEDIG---ITVGAQSVFFEDSGAYTGSVSTNMVKSVGCEYVLCGHSERRTLFNDDDEAINRKV 182
BLAST of mRNA_H-elongata_contig55847.13013.1 vs. uniprot
Match: A0A7X7YYC1_9BACT (Triosephosphate isomerase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7X7YYC1_9BACT) HSP 1 Score: 96.7 bits (239), Expect = 1.110e-22 Identity = 53/85 (62.35%), Postives = 65/85 (76.47%), Query Frame = 1
Query: 1 VEVAVIPPHPFLVPVREQVESVSGSHVSVGAQNLYIENQGAFTGAISTGMLSSVGCTYVLCGHSERRVVFGDSDETVNQKVTTTL 255
V+VAVIPP +L V V++VS + V+VGAQ+LYIE +GAFTG IS ML+ VGCTYVLCGHSERR V G+SDE V +KVT +
Sbjct: 38 VDVAVIPPFVYLQSV---VKAVSSTGVAVGAQDLYIEPKGAFTGEISPAMLTDVGCTYVLCGHSERRHVLGESDEFVGKKVTAAI 119 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55847.13013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig55847.13013.1 >prot_H-elongata_contig55847.13013.1 ID=prot_H-elongata_contig55847.13013.1|Name=mRNA_H-elongata_contig55847.13013.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp VEVAVIPPHPFLVPVREQVESVSGSHVSVGAQNLYIENQGAFTGAISTGMback to top mRNA from alignment at H-elongata_contig55847:2157..3063+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig55847.13013.1 ID=mRNA_H-elongata_contig55847.13013.1|Name=mRNA_H-elongata_contig55847.13013.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=907bp|location=Sequence derived from alignment at H-elongata_contig55847:2157..3063+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig55847:2157..3063+ >mRNA_H-elongata_contig55847.13013.1 ID=mRNA_H-elongata_contig55847.13013.1|Name=mRNA_H-elongata_contig55847.13013.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig55847:2157..3063+ (Himanthalia elongata Himel1 dioecious)back to top |