mRNA_H-elongata_contig55847.13013.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55847.13013.1
Unique NamemRNA_H-elongata_contig55847.13013.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig55847.13013.1 vs. uniprot
Match: D7FSR6_ECTSI (Triosephosphate isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSR6_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.840e-34
Identity = 61/81 (75.31%), Postives = 72/81 (88.89%), Query Frame = 1
Query:    1 VEVAVIPPHPFLVPVREQVESVSGSHVSVGAQNLYIENQGAFTGAISTGMLSSVGCTYVLCGHSERRVVFGDSDETVNQKV 243
            VEVAVIPPHPFLVPV++QV+ V G+ V+VG+Q+LY E+ GAFTGA STGML+SVGC Y+LCGHSERR VFGDSDE VN+KV
Sbjct:   82 VEVAVIPPHPFLVPVKDQVDGVDGNKVAVGSQDLYTEDAGAFTGASSTGMLASVGCEYILCGHSERRSVFGDSDEMVNKKV 162          
BLAST of mRNA_H-elongata_contig55847.13013.1 vs. uniprot
Match: A0A7Y5GW52_9DELT (Triosephosphate isomerase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y5GW52_9DELT)

HSP 1 Score: 101 bits (251), Expect = 1.760e-24
Identity = 51/85 (60.00%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    1 VEVAVIPPHPFLVPVREQVESVSGSHVSVGAQNLYIENQGAFTGAISTGMLSSVGCTYVLCGHSERRVVFGDSDETVNQKVTTTL 255
            VE+AV PP PFLVPV  ++   +GS + +GAQ+ Y+ ++GAFTGA+S  ML SVGC Y+LCGHSERR VFGDSD TV  KV  T+
Sbjct:   36 VEIAVFPPFPFLVPVAAKL---AGSRIGLGAQDCYVADKGAFTGAVSAPMLRSVGCRYILCGHSERRSVFGDSDATVAAKVRRTV 117          
BLAST of mRNA_H-elongata_contig55847.13013.1 vs. uniprot
Match: A0A835ZJI0_9STRA (Triosephosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJI0_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 7.480e-24
Identity = 47/81 (58.02%), Postives = 64/81 (79.01%), Query Frame = 1
Query:    1 VEVAVIPPHPFLVPVREQVESVSGSHVSVGAQNLYIENQGAFTGAISTGMLSSVGCTYVLCGHSERRVVFGDSDETVNQKV 243
            VEV +IPP+PF+ PVR+   ++ GS ++VGAQN ++E++GAFTGA+ST ML SVGC YVLCGHSERR +F + +  +N KV
Sbjct:   39 VEVGIIPPYPFVPPVRD---ALKGSGITVGAQNAFVEDKGAFTGAVSTTMLLSVGCEYVLCGHSERRTIFKEDNALINSKV 116          
BLAST of mRNA_H-elongata_contig55847.13013.1 vs. uniprot
Match: K8Z6D5_NANGC (Triosephosphate isomerase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z6D5_NANGC)

HSP 1 Score: 98.2 bits (243), Expect = 9.650e-24
Identity = 49/81 (60.49%), Postives = 65/81 (80.25%), Query Frame = 1
Query:    1 VEVAVIPPHPFLVPVREQVESVSGSHVSVGAQNLYIENQGAFTGAISTGMLSSVGCTYVLCGHSERRVVFGDSDETVNQKV 243
            V+VAV+ P PFLVPV+E   ++ GS+V +GAQ+LY E++GA+TGA S  M+ SVG  +VLCGHSERR +FGD+DETVN K+
Sbjct:   88 VDVAVVVPFPFLVPVKE---TLKGSNVLIGAQDLYTEDKGAYTGATSLPMIKSVGAQWVLCGHSERRALFGDTDETVNAKL 165          
BLAST of mRNA_H-elongata_contig55847.13013.1 vs. uniprot
Match: A0A7S3PY81_9STRA (Triosephosphate isomerase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PY81_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.140e-23
Identity = 43/80 (53.75%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    4 EVAVIPPHPFLVPVREQVESVSGSHVSVGAQNLYIENQGAFTGAISTGMLSSVGCTYVLCGHSERRVVFGDSDETVNQKV 243
            EV + PPHPF   V+ +VE +    ++VGAQ+++ EN+GA+TG++S  M+ S+GC YVLCGHSERR +FGDSD+++N+KV
Sbjct:   79 EVVIFPPHPFAARVKAEVEDIG---ITVGAQSVFYENKGAYTGSVSINMVKSIGCEYVLCGHSERRTLFGDSDDSINRKV 155          
BLAST of mRNA_H-elongata_contig55847.13013.1 vs. uniprot
Match: A0A7S4ETX6_CHRCT (Triosephosphate isomerase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4ETX6_CHRCT)

HSP 1 Score: 99.0 bits (245), Expect = 3.590e-23
Identity = 48/81 (59.26%), Postives = 63/81 (77.78%), Query Frame = 1
Query:    1 VEVAVIPPHPFLVPVREQVESVSGSHVSVGAQNLYIENQGAFTGAISTGMLSSVGCTYVLCGHSERRVVFGDSDETVNQKV 243
            V+VAV  P+PF+VPV+E   +++GS V +GAQ+ Y E  GA+T A+ST ML SVGC YVL GHSERR +FGD+DE +N+KV
Sbjct:   89 VDVAVCVPYPFIVPVKE---ALAGSKVGLGAQDCYYEESGAYTAAVSTSMLKSVGCDYVLAGHSERRAIFGDTDEDINKKV 166          
BLAST of mRNA_H-elongata_contig55847.13013.1 vs. uniprot
Match: A0A4D9CPZ8_9STRA (Triosephosphate isomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CPZ8_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 6.720e-23
Identity = 49/81 (60.49%), Postives = 65/81 (80.25%), Query Frame = 1
Query:    1 VEVAVIPPHPFLVPVREQVESVSGSHVSVGAQNLYIENQGAFTGAISTGMLSSVGCTYVLCGHSERRVVFGDSDETVNQKV 243
            V+VAV+ P PFLVPV+E   ++ GS+V +GAQ+LY E++GA+TGA S  M+ SVG  +VLCGHSERR +FGD+DETVN K+
Sbjct:   88 VDVAVVVPFPFLVPVKE---TLKGSNVLIGAQDLYTEDKGAYTGATSLPMIKSVGAQWVLCGHSERRALFGDTDETVNAKL 165          
BLAST of mRNA_H-elongata_contig55847.13013.1 vs. uniprot
Match: A0A835YXR2_9STRA (Triosephosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXR2_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 7.620e-23
Identity = 50/85 (58.82%), Postives = 63/85 (74.12%), Query Frame = 1
Query:    1 VEVAVIPPHPFLVPVREQVESVSGSHVSVGAQNLYIENQGAFTGAISTGMLSSVGCTYVLCGHSERRVVFGDSDETVNQKVTTTL 255
            V V VIPP+PFLVPV+    + SG+ + +G QN Y E +GA+TGA+ST MLSSVGCTYVLCGHSERR VF + D  +N+K+   L
Sbjct:   74 VGVVVIPPYPFLVPVQN---AASGA-LMIGGQNCYFEEKGAYTGAVSTAMLSSVGCTYVLCGHSERRTVFRNDDNAINRKLRAVL 154          
BLAST of mRNA_H-elongata_contig55847.13013.1 vs. uniprot
Match: A0A7R9WFT5_9STRA (Triosephosphate isomerase n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WFT5_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 8.960e-23
Identity = 43/80 (53.75%), Postives = 62/80 (77.50%), Query Frame = 1
Query:    4 EVAVIPPHPFLVPVREQVESVSGSHVSVGAQNLYIENQGAFTGAISTGMLSSVGCTYVLCGHSERRVVFGDSDETVNQKV 243
            EV + PPHPF+  V+++VE +    ++VGAQ+++ E+ GA+TG++ST M+ SVGC YVLCGHSERR +F D DE +N+KV
Sbjct:  106 EVVIFPPHPFISRVKDKVEDIG---ITVGAQSVFFEDSGAYTGSVSTNMVKSVGCEYVLCGHSERRTLFNDDDEAINRKV 182          
BLAST of mRNA_H-elongata_contig55847.13013.1 vs. uniprot
Match: A0A7X7YYC1_9BACT (Triosephosphate isomerase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7X7YYC1_9BACT)

HSP 1 Score: 96.7 bits (239), Expect = 1.110e-22
Identity = 53/85 (62.35%), Postives = 65/85 (76.47%), Query Frame = 1
Query:    1 VEVAVIPPHPFLVPVREQVESVSGSHVSVGAQNLYIENQGAFTGAISTGMLSSVGCTYVLCGHSERRVVFGDSDETVNQKVTTTL 255
            V+VAVIPP  +L  V   V++VS + V+VGAQ+LYIE +GAFTG IS  ML+ VGCTYVLCGHSERR V G+SDE V +KVT  +
Sbjct:   38 VDVAVIPPFVYLQSV---VKAVSSTGVAVGAQDLYIEPKGAFTGEISPAMLTDVGCTYVLCGHSERRHVLGESDEFVGKKVTAAI 119          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55847.13013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSR6_ECTSI1.840e-3475.31Triosephosphate isomerase n=2 Tax=Ectocarpus TaxID... [more]
A0A7Y5GW52_9DELT1.760e-2460.00Triosephosphate isomerase n=1 Tax=Myxococcales bac... [more]
A0A835ZJI0_9STRA7.480e-2458.02Triosephosphate isomerase n=1 Tax=Tribonema minus ... [more]
K8Z6D5_NANGC9.650e-2460.49Triosephosphate isomerase (Fragment) n=1 Tax=Nanno... [more]
A0A7S3PY81_9STRA2.140e-2353.75Triosephosphate isomerase n=1 Tax=Chaetoceros debi... [more]
A0A7S4ETX6_CHRCT3.590e-2359.26Triosephosphate isomerase n=1 Tax=Chrysotila carte... [more]
A0A4D9CPZ8_9STRA6.720e-2360.49Triosephosphate isomerase n=1 Tax=Nannochloropsis ... [more]
A0A835YXR2_9STRA7.620e-2358.82Triosephosphate isomerase n=1 Tax=Tribonema minus ... [more]
A0A7R9WFT5_9STRA8.960e-2353.75Triosephosphate isomerase n=2 Tax=Pseudictyota dub... [more]
A0A7X7YYC1_9BACT1.110e-2262.35Triosephosphate isomerase n=1 Tax=Planctomycetes b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55847contigH-elongata_contig55847:2157..3063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue8.2e-17
Seed eggNOG ortholog2903.EOD07548
Preferred nameTPI3
KEGG rclassRC00423
KEGG koko:K01803
KEGG ReactionR01015
KEGG Pathwayko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00002,M00003
GOsGO:0003674,GO:0003824,GO:0004807,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006071,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019400,GO:0019405,GO:0019438,GO:0019439,GO:0019563,GO:0019637,GO:0019682,GO:0019693,GO:0019751,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042866,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046164,GO:0046166,GO:0046174,GO:0046184,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616
EggNOG free text desc.triosephosphate isomerase
EggNOG OGsCOG0149@1,KOG1643@2759
EC5.3.1.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTriose-phosphate isomerase
Ec32 orthologEc-03_002790.1
Exons2
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930909.6050742-CDS-H-elongata_contig55847:2156..22101622930909.6050742-CDS-H-elongata_contig55847:2156..2210Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55847 2157..2210 +
1691679620.765987-CDS-H-elongata_contig55847:2156..22101691679620.765987-CDS-H-elongata_contig55847:2156..2210Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55847 2157..2210 +
1622930909.623699-CDS-H-elongata_contig55847:2862..30631622930909.623699-CDS-H-elongata_contig55847:2862..3063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55847 2863..3063 +
1691679620.778963-CDS-H-elongata_contig55847:2862..30631691679620.778963-CDS-H-elongata_contig55847:2862..3063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55847 2863..3063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55847.13013.1prot_H-elongata_contig55847.13013.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55847 2157..3063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55847.13013.1

>prot_H-elongata_contig55847.13013.1 ID=prot_H-elongata_contig55847.13013.1|Name=mRNA_H-elongata_contig55847.13013.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
VEVAVIPPHPFLVPVREQVESVSGSHVSVGAQNLYIENQGAFTGAISTGM
LSSVGCTYVLCGHSERRVVFGDSDETVNQKVTTTL
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mRNA from alignment at H-elongata_contig55847:2157..3063+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55847.13013.1 ID=mRNA_H-elongata_contig55847.13013.1|Name=mRNA_H-elongata_contig55847.13013.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=907bp|location=Sequence derived from alignment at H-elongata_contig55847:2157..3063+ (Himanthalia elongata Himel1 dioecious)
GTTGAAGTGGCGGTGATTCCTCCGCATCCCTTCCTCGTGCCAGTGCGAGA GCAGGTAGGGTTTTAGGGTTTCGACAATTAGCGAAAGCGGTGGCATGAGT TCCGTGAACCACGATTGTTTTTTTTGGGTCGCGGTTCTCTTTCTTTTTTC GATTTTCTTCCTTCTCAATACCTGATATATTGGTTGGTTCAATGATTGAA TGACGCTTTTGGCGTTTTGTCCTAGCAACCTGAAGAGCATACATTAGGTG ACGCAACTGAGTCAGCCCTAGACTCTTACGTTTAACCTATTTTATTGGGT CCAATCAAGGCCGTTTCGTTTCCCGCTTGGTGGTTGCTTCAATGTGACCT GCTCGGCTCAGGGTTTCTAACTGCTTAGATGGCGTTACTCTCTTGGGGAG GGAGGAAAAAGTGGGCATCCGTAATAATGTACAATCAGTATGGGAGGCGG TAGGGGGGAAGAGAGCCTCCATAGTTATAGACAACCAGTATTAAAAGTCA AAATCATTAATAGCAAAGAATGGGCGGAATAGTTAGTTCGGGGGACGAAA AAGACGGATGCGCGCTGAAGAATATGGAGTGATTCACATCTCGGGAAAGG CGACGCTTGCCGGCCTCGCTCGTTTTGTACCCGCTCCTTGCAGTTTATTT ATTTTGAGAAACAAAGCAGCCGACGACCAAAATAACCAAACAAACCAACC AATCAGGTGGAGTCCGTGTCGGGCAGCCACGTGAGCGTCGGCGCCCAGAA CCTGTACATCGAAAACCAGGGGGCCTTCACGGGGGCGATATCGACGGGGA TGCTCTCGTCCGTGGGTTGCACATACGTGCTCTGTGGTCACTCGGAGCGC CGGGTGGTGTTCGGGGACAGTGACGAAACCGTCAACCAAAAGGTAACCAC TACACTA
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Coding sequence (CDS) from alignment at H-elongata_contig55847:2157..3063+

>mRNA_H-elongata_contig55847.13013.1 ID=mRNA_H-elongata_contig55847.13013.1|Name=mRNA_H-elongata_contig55847.13013.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig55847:2157..3063+ (Himanthalia elongata Himel1 dioecious)
GTTGAAGTGGCGGTGATTCCTCCGCATCCCTTCCTCGTGCCAGTGCGAGA
GCAGGTTGAAGTGGCGGTGATTCCTCCGCATCCCTTCCTCGTGCCAGTGC
GAGAGCAGGTGGAGTCCGTGTCGGGCAGCCACGTGAGCGTCGGCGCCCAG
AACCTGTACATCGAAAACCAGGGGGCCTTCACGGGGGCGATATCGACGGG
GATGCTCTCGTCCGTGGGTTGCACATACGTGCTCTGTGGTCACTCGGAGC
GCCGGGTGGTGTTCGGGGACAGTGACGAAACCGTCAACCAAAAGGTAACC
ACTACACTAGTGGAGTCCGTGTCGGGCAGCCACGTGAGCGTCGGCGCCCA
GAACCTGTACATCGAAAACCAGGGGGCCTTCACGGGGGCGATATCGACGG
GGATGCTCTCGTCCGTGGGTTGCACATACGTGCTCTGTGGTCACTCGGAG
CGCCGGGTGGTGTTCGGGGACAGTGACGAAACCGTCAACCAAAAGGTAAC
CACTACACTA
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