mRNA_H-elongata_contig55754.13006.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55754.13006.1
Unique NamemRNA_H-elongata_contig55754.13006.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig55754.13006.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 1.320e-67
Identity = 138/336 (41.07%), Postives = 200/336 (59.52%), Query Frame = 1
Query:  112 VGTKMIYKRKVGQDGKVEKYKCRLVAQGLWQVEGVHYTEKYSPTPSTASIRMRFATAAAKDGELRHFDAEQAFLKADIDEELYIEIPEKYQKFPGAVGRLSKAIYGLVQAGRCWNNKFCGNMAAIGFEQRKADPGVFRKVVDCEAEVVVVIHVDDILAHAKDKATMDRFAAELGKKFKLKDMGDARYYMGCHITRNRKACELKVDQHLYVESMVEKFDVKKESKIPATTGVPTLSKANGPGEGGNEEIPIPEAVRALMWTATMTRLDMMSAVRAVTRFCENPGAAHKKAVVKIMKYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSG 1119
            V +K  +  K  ++GK++ +K RLVA+G  Q+  V Y    SP PS+ASI++  A A  K   L H+D +QA+  A +DEE+++++P         + +  +AIYGL Q+GR W       +   GFEQ KADP VFRK+VD    +++VI+VDDIL    D+   +   A L KKF  K++G+ +++ GC I R+ +A  L++ Q  Y++SMVE+FDVK  S+IPAT G   L       EGG  E P+ EA+ ++MW +T +R D+  AVRAV R    P   H  A+ KI+ YL  T+D GITY  +G GL +  Y D+ + A  + RRSVSG
Sbjct:  782 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-DLGPKREDEEGG--EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSG 1111          
BLAST of mRNA_H-elongata_contig55754.13006.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 1.330e-67
Identity = 138/336 (41.07%), Postives = 200/336 (59.52%), Query Frame = 1
Query:  112 VGTKMIYKRKVGQDGKVEKYKCRLVAQGLWQVEGVHYTEKYSPTPSTASIRMRFATAAAKDGELRHFDAEQAFLKADIDEELYIEIPEKYQKFPGAVGRLSKAIYGLVQAGRCWNNKFCGNMAAIGFEQRKADPGVFRKVVDCEAEVVVVIHVDDILAHAKDKATMDRFAAELGKKFKLKDMGDARYYMGCHITRNRKACELKVDQHLYVESMVEKFDVKKESKIPATTGVPTLSKANGPGEGGNEEIPIPEAVRALMWTATMTRLDMMSAVRAVTRFCENPGAAHKKAVVKIMKYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSG 1119
            V +K  +  K  ++GK++ +K RLVA+G  Q+  V Y    SP PS+ASI++  A A  K   L H+D +QA+  A +DEE+++++P         + +  +AIYGL Q+GR W       +   GFEQ KADP VFRK+VD    +++VI+VDDIL    D+   +   A L KKF  K++G+ +++ GC I R+ +A  L++ Q  Y++SMVE+FDVK  S+IPAT G   L       EGG  E P+ EA+ ++MW +T +R D+  AVRAV R    P   H  A+ KI+ YL  T+D GITY  +G GL +  Y D+ + A  + RRSVSG
Sbjct: 1181 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-DLGPKREDEEGG--EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSG 1510          
BLAST of mRNA_H-elongata_contig55754.13006.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 1.780e-67
Identity = 138/336 (41.07%), Postives = 200/336 (59.52%), Query Frame = 1
Query:  112 VGTKMIYKRKVGQDGKVEKYKCRLVAQGLWQVEGVHYTEKYSPTPSTASIRMRFATAAAKDGELRHFDAEQAFLKADIDEELYIEIPEKYQKFPGAVGRLSKAIYGLVQAGRCWNNKFCGNMAAIGFEQRKADPGVFRKVVDCEAEVVVVIHVDDILAHAKDKATMDRFAAELGKKFKLKDMGDARYYMGCHITRNRKACELKVDQHLYVESMVEKFDVKKESKIPATTGVPTLSKANGPGEGGNEEIPIPEAVRALMWTATMTRLDMMSAVRAVTRFCENPGAAHKKAVVKIMKYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSG 1119
            V +K  +  K  ++GK++ +K RLVA+G  Q+  V Y    SP PS+ASI++  A A  K   L H+D +QA+  A +DEE+++++P         + +  +AIYGL Q+GR W       +   GFEQ KADP VFRK+VD    +++VI+VDDIL    D+   +   A L KKF  K++G+ +++ GC I R+ +A  L++ Q  Y++SMVE+FDVK  S+IPAT G   L       EGG  E P+ EA+ ++MW +T +R D+  AVRAV R    P   H  A+ KI+ YL  T+D GITY  +G GL +  Y D+ + A  + RRSVSG
Sbjct: 1161 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-DLGPKREDEEGG--EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSG 1490          
BLAST of mRNA_H-elongata_contig55754.13006.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 1.820e-67
Identity = 138/336 (41.07%), Postives = 200/336 (59.52%), Query Frame = 1
Query:  112 VGTKMIYKRKVGQDGKVEKYKCRLVAQGLWQVEGVHYTEKYSPTPSTASIRMRFATAAAKDGELRHFDAEQAFLKADIDEELYIEIPEKYQKFPGAVGRLSKAIYGLVQAGRCWNNKFCGNMAAIGFEQRKADPGVFRKVVDCEAEVVVVIHVDDILAHAKDKATMDRFAAELGKKFKLKDMGDARYYMGCHITRNRKACELKVDQHLYVESMVEKFDVKKESKIPATTGVPTLSKANGPGEGGNEEIPIPEAVRALMWTATMTRLDMMSAVRAVTRFCENPGAAHKKAVVKIMKYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSG 1119
            V +K  +  K  ++GK++ +K RLVA+G  Q+  V Y    SP PS+ASI++  A A  K   L H+D +QA+  A +DEE+++++P         + +  +AIYGL Q+GR W       +   GFEQ KADP VFRK+VD    +++VI+VDDIL    D+   +   A L KKF  K++G+ +++ GC I R+ +A  L++ Q  Y++SMVE+FDVK  S+IPAT G   L       EGG  E P+ EA+ ++MW +T +R D+  AVRAV R    P   H  A+ KI+ YL  T+D GITY  +G GL +  Y D+ + A  + RRSVSG
Sbjct: 1324 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-DLGPKREDEEGG--EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSG 1653          
BLAST of mRNA_H-elongata_contig55754.13006.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 233 bits (593), Expect = 6.120e-66
Identity = 133/336 (39.58%), Postives = 199/336 (59.23%), Query Frame = 1
Query:  112 VGTKMIYKRKVGQDGKVEKYKCRLVAQGLWQVEGVHYTEKYSPTPSTASIRMRFATAAAKDGELRHFDAEQAFLKADIDEELYIEIPEKYQKFPGAVGRLSKAIYGLVQAGRCWNNKFCGNMAAIGFEQRKADPGVFRKVVDCEAEVVVVIHVDDILAHAKDKATMDRFAAELGKKFKLKDMGDARYYMGCHITRNRKACELKVDQHLYVESMVEKFDVKKESKIPATTGVPTLSKANGPGEGGNEEIPIPEAVRALMWTATMTRLDMMSAVRAVTRFCENPGAAHKKAVVKIMKYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSG 1119
            V +K  +  K  ++GK++ +K RLVA+G  Q+  V Y    SP PS+ASI++  A A  K   L H+D +QA+  A +DEE+++++P         + +  +AIYGL Q+GR W       +   GFEQ KADP VFRK+VD    +++VI+VDDIL    D+   +   A L KKF  K++ + +++ GC I R+ +   L++ Q  Y++SMV++FDV+  S+IPA+ GV  L       +GG  E P+ EA+ ++MW +T +R D+  AVRAV R    P   H  A+ KI+ YL  T+D GITY  +G GL +  Y D+ + A  + RRSVSG
Sbjct:  336 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGV-DLGPKRDDEKGG--EWPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSG 665          
BLAST of mRNA_H-elongata_contig55754.13006.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 3.790e-65
Identity = 133/336 (39.58%), Postives = 191/336 (56.85%), Query Frame = 1
Query:  112 VGTKMIYKRKVGQDGKVEKYKCRLVAQGLWQVEGVHYTEKYSPTPSTASIRMRFATAAAKDGELRHFDAEQAFLKADIDEELYIEIPEKYQKFPGAVGRLSKAIYGLVQAGRCWNNKFCGNMAAIGFEQRKADPGVFRKVVDCEAEVVVVIHVDDILAHAKDKATMDRFAAELGKKFKLKDMGDARYYMGCHITRNRKACELKVDQHLYVESMVEKFDVKKESKIPATTGVPTLSKANGPGEGGNEEIPIPEAVRALMWTATMTRLDMMSAVRAVTRFCENPGAAHKKAVVKIMKYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSG 1119
            V +K  +  K  +DGK+EK+K RLVA+G  Q+  V Y    SP PS+ASI++  A A  K  +L H+D +QAF  A +DE++++ +P    +    V +  +AIYGL Q+GR W       +   GFEQ KADP VFRK+ D           D IL    D    +  A+ L K F  KD+G+  ++ GC + R+ +A  L++ Q  Y++S+V +FDV+  S IPA+ GV    K +    G   E P+ EA+ ++MW +T +R D+  AVRAV R    P   H KA+VKI+ YL  T+D GITY  +G GL +  Y D+ + A  + RRSVSG
Sbjct:   45 VSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLAS-LNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGG---EWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYE-RGSGLGLAVYVDASY-ADAEDRRSVSG 374          
BLAST of mRNA_H-elongata_contig55754.13006.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 2.240e-63
Identity = 132/326 (40.49%), Postives = 191/326 (58.59%), Query Frame = 1
Query:  139 KVGQDGKVEKYKCRLVAQGLWQVEGVHYTEKYSPTPSTASIRMRFATAAAKDGELRHFDAEQAFLKADIDEELYIEIPEKYQKFPGAVGRLSKAIYGLVQAGRCWNNKFCGNMAAIGFEQRKADPGVFRKVVDCEAEVVVVIHVDDILAHAKDKATMDRFAAELGKKFKLKDMGDARYYMGCHITRNRKACELKVDQHLYVESMVEKFDVKKESKIPATTGVPTLSKANGPGEGGNEEIPIPEAVRALMWTATMTRLDMMSAVRAVTRFCENPGAAHKKAVVKIMKYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVS 1116
            K  ++GK++  K R VA+G  Q+  +      SP PS+ASI++  A A  K   L H+D +QA+  A +DEE+++++P         + +  +AIYGL Q+GR W       +   GFEQ KADP VFRK+VD    +++VI+VDDIL    D+   +   A L KKF  K++G+ +++ GC I R+  A  L++ Q  Y++SMVE+FDVK  S+IPAT G   L       +GG  E P+ EAV ++MW +T +R D+  AVRAV R    P   H  A+ KI+ YL  T+D GITY  +G GL +  Y D+ + A  + RRSVS
Sbjct:  382 KTNKEGKIDTLKARRVARGFSQITSIISIPSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-DLGPKREDDKGG--EWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDARY-ADTEDRRSVS 701          
BLAST of mRNA_H-elongata_contig55754.13006.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 2.390e-62
Identity = 136/344 (39.53%), Postives = 195/344 (56.69%), Query Frame = 1
Query:  112 VGTKMIYKRKVGQDGKVEKYKCRLVAQGLWQVEGVHYTEKYSPTPSTASIRMRFATAAAKDGELRHFDAEQAFLKADIDEELYIEIPEKYQKFPGAVGRLSKAIYGLVQAGRCWNNKFCGNMAAIGFEQRKADPGVFRKVVDCEAEVVVVIHVDDILAHAKDKATMDRFAAELGKKFKLKDMGDARYYMGCHITRNRKACELKVDQHLYVESMVEKFDVKKESKIPATTGVPTLSKANGPGEGGNEEIPIPEAVRALMWTATMTRLDMMSAVRAVTRFCENPGAAHKKAVVKIMKYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLKLAKG 1143
            V +K  +  K  ++GK++K+K R+VA+G  Q+  V Y    SP PS+ASI +  A A  K   L H+D +QA   A +DEE++  +P         + +  +AIYGL Q+GR W       +   GFEQ KADP VFRK+VD    +++VI+VDDIL    D+   +   A L KKF  K++G+ +++ GC I R+ +A  L++ Q  Y++SMVE+FDVK  S+IPAT G   L       EGG  E P+ +A+ ++MW +T +R D+  A RAV R    P   H  A+ KI+ YL  T+D GITY  +G GL    Y D+ +    DT  S SG+ L    G
Sbjct:  891 VSSKWCFSWKTNKEGKIDKFKARVVARGFSQLPNVDYFRSSSPCPSSASIMLMLAVANEKGMNLNHWDVKQASPHATLDEEVFPRLPAGCGDKSHQIVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-DLGPKREDEEGG--EWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGPSVYVDASYA---DTEDSRSGSGLATTVG 1226          
BLAST of mRNA_H-elongata_contig55754.13006.1 vs. uniprot
Match: A0A6H5JJY0_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY0_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 3.330e-61
Identity = 129/336 (38.39%), Postives = 196/336 (58.33%), Query Frame = 1
Query:  112 VGTKMIYKRKVGQDGKVEKYKCRLVAQGLWQVEGVHYTEKYSPTPSTASIRMRFATAAAKDGELRHFDAEQAFLKADIDEELYIEIPEKYQKFPGAVGRLSKAIYGLVQAGRCWNNKFCGNMAAIGFEQRKADPGVFRKVVDCEAEVVVVIHVDDILAHAKDKATMDRFAAELGKKFKLKDMGDARYYMGCHITRNRKACELKVDQHLYVESMVEKFDVKKESKIPATTGVPTLSKANGPGEGGNEEIPIPEAVRALMWTATMTRLDMMSAVRAVTRFCENPGAAHKKAVVKIMKYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSG 1119
            V +K  +  KV ++G+++K+K RLVA+G  Q+  V Y    SP PS+ASI++  A A  K   L H+D +QA   A +DEE+++++P         + +   AIYGL Q+ R W       +   GFE+ KAD  VFRK+VD    +++VI+ DDIL    D+   +   A L KKF  K++G+ +++ GC I R+ +A  L++ Q  Y++SM+++FDV+  S+IPAT G   L       EGG  E P+ EA+ ++MW +T +R D+  AVRA  R   +P   H  A+  ++ YL  T+D GITY  +G GL +  Y D+ + A  + RRSVSG
Sbjct:  668 VSSKWCFSWKVNKEGRIDKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAHTHATLDEEVFLKLPAGCGDRSYKIVKAEPAIYGLKQSERQWGYLAADTLVENGFEECKADRCVFRKMVDEVVVMIIVIYADDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMLKRFDVQSTSRIPATPGA-DLGPIREDEEGG--EWPVREAIGSMMWMSTFSRPDVSFAVRAAARHAHSPAERHWDAIQTVLGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSG 997          
BLAST of mRNA_H-elongata_contig55754.13006.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 215 bits (548), Expect = 8.210e-61
Identity = 135/387 (34.88%), Postives = 214/387 (55.30%), Query Frame = 1
Query:   19 DDWRKAEETKMRGMVENCVYKQVARSKDKLLVGTKMIYKRKVGQDGKVEKYKCRLVAQGLWQVEGVHYTEKYSPTPSTASIRMRFATAAAKDGELRHFDAEQAFLKADIDEELYIEIPEKYQKF---------PGAVGRLSKAIYGLVQAGRCWNNKFCGNMAAIGFEQRKADPGVFRKVVDCEAEVVVVIHVDDILAHAKDKATMDRFAAELGKKFKLKDMGDARYYMGCHITRNRKACELKVDQHLYVESMVEKFDVK--KESKIPATTGVPTLSKANGP----GEGGNEEIPIPEAVRALMWTATMTRLDMMSAVRAVTRFCENPGAAHKKAVVKIMKYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLKL 1134
            D+W+KA  ++++ ++ N  +K V +   +  +G + ++  K  + G+V +YK RLVA+G  Q  G+ Y E YSP     S+R   A   A+  E+   D + AFL  +++EE+Y+E+PE  ++             V  L +++YGL QA R WN     ++ + GFE   ADP V+ +  + E E +V ++VDD+L  ++ KA +    A + +KF++KD+G AR+ +G  I  + +   L + Q  Y ES+++KF  +  K    P   GV  L+KA+ P     +   +  P    V +LM+ A  TR D+  AV  ++RF ENPG  H  A +K+++YLL TKD GI Y G   G   EAY+D+D+    D RRSVSG +L L
Sbjct:   79 DEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAYSDADWAGNRDDRRSVSGMLLML 462          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55754.13006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSG8_9PHAE1.320e-6741.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JN00_9PHAE1.330e-6741.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZQ8_9PHAE1.780e-6741.07Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.820e-6741.07Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JC10_9PHAE6.120e-6639.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCG0_9PHAE3.790e-6539.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQN6_9PHAE2.240e-6340.49Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQW4_9PHAE2.390e-6239.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JJY0_9PHAE3.330e-6138.39CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6A3Q908_9STRA8.210e-6134.88Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55754contigH-elongata_contig55754:2671..3833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.8
Seed ortholog evalue5.5e-52
Seed eggNOG ortholog164328.Phyra85763
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1152
Cds size1152
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930908.820979-CDS-H-elongata_contig55754:2670..35001622930908.820979-CDS-H-elongata_contig55754:2670..3500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55754 2671..3500 +
1691679620.4226756-CDS-H-elongata_contig55754:2670..35001691679620.4226756-CDS-H-elongata_contig55754:2670..3500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55754 2671..3500 +
1622930908.8398137-CDS-H-elongata_contig55754:3511..38331622930908.8398137-CDS-H-elongata_contig55754:3511..3833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55754 3512..3833 +
1691679620.4348614-CDS-H-elongata_contig55754:3511..38331691679620.4348614-CDS-H-elongata_contig55754:3511..3833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55754 3512..3833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55754.13006.1prot_H-elongata_contig55754.13006.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55754 2671..3833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55754.13006.1

>prot_H-elongata_contig55754.13006.1 ID=prot_H-elongata_contig55754.13006.1|Name=mRNA_H-elongata_contig55754.13006.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=384bp
MESPEWDDWRKAEETKMRGMVENCVYKQVARSKDKLLVGTKMIYKRKVGQ
DGKVEKYKCRLVAQGLWQVEGVHYTEKYSPTPSTASIRMRFATAAAKDGE
LRHFDAEQAFLKADIDEELYIEIPEKYQKFPGAVGRLSKAIYGLVQAGRC
WNNKFCGNMAAIGFEQRKADPGVFRKVVDCEAEVVVVIHVDDILAHAKDK
ATMDRFAAELGKKFKLKDMGDARYYMGCHITRNRKACELKVDQHLYVESM
VEKFDVKKESKIPATTGVPTLSKANGPGEGGNEEIPIPEAVRALMWTATM
TRLDMMSAVRAVTRFCENPGAAHKKAVVKIMKYLLHTKDWGITYGGQGCG
LCMEAYTDSDFGACLDTRRSVSGAVLKLAKGAIS
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mRNA from alignment at H-elongata_contig55754:2671..3833+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55754.13006.1 ID=mRNA_H-elongata_contig55754.13006.1|Name=mRNA_H-elongata_contig55754.13006.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1163bp|location=Sequence derived from alignment at H-elongata_contig55754:2671..3833+ (Himanthalia elongata Himel1 dioecious)
ATGGAATCGCCGGAATGGGACGATTGGCGGAAAGCAGAGGAAACAAAGAT GCGTGGCATGGTCGAAAACTGCGTTTATAAGCAGGTGGCTCGGTCGAAGG ATAAACTCTTGGTTGGCACAAAAATGATCTACAAGCGAAAGGTCGGACAG GACGGCAAGGTCGAGAAATACAAGTGCCGGCTTGTAGCTCAAGGACTCTG GCAGGTGGAAGGTGTGCACTATACGGAAAAATACTCGCCCACGCCATCGA CCGCGTCAATCCGGATGCGCTTCGCCACAGCAGCGGCCAAGGACGGCGAG CTGCGCCATTTCGACGCGGAGCAGGCATTCCTGAAAGCGGACATCGATGA GGAATTGTACATTGAGATCCCCGAGAAGTACCAAAAGTTTCCGGGGGCAG TGGGACGGCTGAGCAAGGCCATTTACGGACTCGTACAGGCGGGGAGGTGC TGGAACAACAAGTTCTGCGGCAATATGGCGGCGATTGGATTCGAGCAGAG GAAGGCGGATCCGGGCGTGTTCCGTAAGGTCGTTGACTGCGAGGCGGAAG TGGTGGTGGTCATACACGTGGACGATATTCTTGCTCACGCCAAGGACAAA GCGACTATGGATAGATTCGCCGCTGAGCTTGGGAAAAAGTTCAAATTGAA GGACATGGGTGACGCCAGGTACTACATGGGCTGTCACATTACTAGGAACC GCAAGGCGTGCGAGCTGAAGGTCGACCAACACTTGTACGTGGAGTCGATG GTGGAAAAGTTTGACGTCAAGAAGGAAAGCAAGATACCAGCTACAACGGG GGTGCCAACACTTTCAAAGGCGAACGGGCCGTGGAACCCAGAGGAGAAGG AGGAAATGAGGAAATTCCCATACCGGAAGCAGTGAGGGCGCTTATGTGGA CGGCGACGATGACACGGTTGGACATGATGAGCGCAGTACGTGCTGTGACC AGGTTCTGCGAAAATCCTGGGGCGGCGCATAAGAAGGCAGTGGTGAAGAT TATGAAGTATCTCCTTCACACAAAGGATTGGGGGATTACCTACGGTGGAC AAGGCTGTGGACTCTGCATGGAGGCATACACGGACTCGGATTTTGGAGCC TGTCTGGATACGAGACGATCGGTGTCAGGTGCGGTGTTGAAGCTGGCGAA GGGGGCGATCAGC
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Coding sequence (CDS) from alignment at H-elongata_contig55754:2671..3833+

>mRNA_H-elongata_contig55754.13006.1 ID=mRNA_H-elongata_contig55754.13006.1|Name=mRNA_H-elongata_contig55754.13006.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2304bp|location=Sequence derived from alignment at H-elongata_contig55754:2671..3833+ (Himanthalia elongata Himel1 dioecious)
ATGGAATCGCCGGAATGGGACGATTGGCGGAAAGCAGAGGAAACAAAGAT
GCGTGGCATGGTCGAAAACTGCGTTTATAAGCAGGTGGCTCGGTCGAAGG
ATAAACTCTTGGTTGGCACAAAAATGATCTACAAGCGAAAGGTCGGACAG
GACGGCAAGGTCGAGAAATACAAGTGCCGGCTTGTAGCTCAAGGACTCTG
GCAGGTGGAAGGTGTGCACTATACGGAAAAATACTCGCCCACGCCATCGA
CCGCGTCAATCCGGATGCGCTTCGCCACAGCAGCGGCCAAGGACGGCGAG
CTGCGCCATTTCGACGCGGAGCAGGCATTCCTGAAAGCGGACATCGATGA
GGAATTGTACATTGAGATCCCCGAGAAGTACCAAAAGTTTCCGGGGGCAG
TGGGACGGCTGAGCAAGGCCATTTACGGACTCGTACAGGCGGGGAGGTGC
TGGAACAACAAGTTCTGCGGCAATATGGCGGCGATTGGATTCGAGCAGAG
GAAGGCGGATCCGGGCGTGTTCCGTAAGGTCGTTGACTGCGAGGCGGAAG
TGGTGGTGGTCATACACGTGGACGATATTCTTGCTCACGCCAAGGACAAA
GCGACTATGGATAGATTCGCCGCTGAGCTTGGGAAAAAGTTCAAATTGAA
GGACATGGGTGACGCCAGGTACTACATGGGCTGTCACATTACTAGGAACC
GCAAGGCGTGCGAGCTGAAGGTCGACCAACACTTGTACGTGGAGTCGATG
GTGGAAAAGTTTGACGTCAAGAAGGAAAGCAAGATACCAGCTACAACGGG
GGTGCCAACACTTTCAAAGGCGAACGGGCCATGGAATCGCCGGAATGGGA
CGATTGGCGGAAAGCAGAGGAAACAAAGATGCGTGGCATGGTCGAAAACT
GCGTTTATAAGCAGGTGGCTCGGTCGAAGGATAAACTCTTGGTTGGCACA
AAAATGATCTACAAGCGAAAGGTCGGACAGGACGGCAAGGTCGAGAAATA
CAAGTGCCGGCTTGTAGCTCAAGGACTCTGGCAGGTGGAAGGTGTGCACT
ATACGGAAAAATACTCGCCCACGCCATCGACCGCGTCAATCCGGATGCGC
TTCGCCACAGCAGCGGCCAAGGACGGCGAGCTGCGCCATTTCGACGCGGA
GCAGGCATTCCTGAAAGCGGACATCGATGAGGAATTGTACATTGAGATCC
CCGAGAAGTACCAAAAGTTTCCGGGGGCAGTGGGACGGCTGAGCAAGGCC
ATTTACGGACTCGTACAGGCGGGGAGGTGCTGGAACAACAAGTTCTGCGG
CAATATGGCGGCGATTGGATTCGAGCAGAGGAAGGCGGATCCGGGCGTGT
TCCGTAAGGTCGTTGACTGCGAGGCGGAAGTGGTGGTGGTCATACACGTG
GACGATATTCTTGCTCACGCCAAGGACAAAGCGACTATGGATAGATTCGC
CGCTGAGCTTGGGAAAAAGTTCAAATTGAAGGACATGGGTGACGCCAGGT
ACTACATGGGCTGTCACATTACTAGGAACCGCAAGGCGTGCGAGCTGAAG
GTCGACCAACACTTGTACGTGGAGTCGATGGTGGAAAAGTTTGACGTCAA
GAAGGAAAGCAAGATACCAGCTACAACGGGGGTGCCAACACTTTCAAAGG
CGAACGGGCCAGGAGAAGGAGGAAATGAGGAAATTCCCATACCGGAAGCA
GTGAGGGCGCTTATGTGGACGGCGACGATGACACGGTTGGACATGATGAG
CGCAGTACGTGCTGTGACCAGGTTCTGCGAAAATCCTGGGGCGGCGCATA
AGAAGGCAGTGGTGAAGATTATGAAGTATCTCCTTCACACAAAGGATTGG
GGGATTACCTACGGTGGACAAGGCTGTGGACTCTGCATGGAGGCATACAC
GGACTCGGATTTTGGAGCCTGTCTGGATACGAGACGATCGGTGTCAGGTG
CGGTGTTGAAGCTGGCGAAGGGGGCGATCAGCAGGAGAAGGAGGAAATGA
GGAAATTCCCATACCGGAAGCAGTGAGGGCGCTTATGTGGACGGCGACGA
TGACACGGTTGGACATGATGAGCGCAGTACGTGCTGTGACCAGGTTCTGC
GAAAATCCTGGGGCGGCGCATAAGAAGGCAGTGGTGAAGATTATGAAGTA
TCTCCTTCACACAAAGGATTGGGGGATTACCTACGGTGGACAAGGCTGTG
GACTCTGCATGGAGGCATACACGGACTCGGATTTTGGAGCCTGTCTGGAT
ACGAGACGATCGGTGTCAGGTGCGGTGTTGAAGCTGGCGAAGGGGGCGAT
CAGC
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