mRNA_H-elongata_contig55741.13002.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55741.13002.1
Unique NamemRNA_H-elongata_contig55741.13002.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55741.13002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55741contigH-elongata_contig55741:2006..3131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size756
Cds size429
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55741.13002.1prot_H-elongata_contig55741.13002.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55741 2006..2805 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930908.499275-CDS-H-elongata_contig55741:2005..21901622930908.499275-CDS-H-elongata_contig55741:2005..2190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55741 2006..2190 +
1691679620.2526298-CDS-H-elongata_contig55741:2005..21901691679620.2526298-CDS-H-elongata_contig55741:2005..2190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55741 2006..2190 +
1622930908.5188768-CDS-H-elongata_contig55741:2561..28051622930908.5188768-CDS-H-elongata_contig55741:2561..2805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55741 2562..2805 +
1691679620.2680836-CDS-H-elongata_contig55741:2561..28051691679620.2680836-CDS-H-elongata_contig55741:2561..2805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55741 2562..2805 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930908.5353637-UTR-H-elongata_contig55741:2805..31311622930908.5353637-UTR-H-elongata_contig55741:2805..3131Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55741 2806..3131 +
1691679620.2786777-UTR-H-elongata_contig55741:2805..31311691679620.2786777-UTR-H-elongata_contig55741:2805..3131Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55741 2806..3131 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55741.13002.1

>prot_H-elongata_contig55741.13002.1 ID=prot_H-elongata_contig55741.13002.1|Name=mRNA_H-elongata_contig55741.13002.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
AARKKITAPALTRNKSHRNHLFASTGDALGERTKYTWTTPKLSVLPASID
FLNRSGSQLLSRRFCPRRNFRCLNSHHSASCSGRLPCPSLVLDGLLTRLN
PGACFHERPRTRRGAHAQRMSNRSQTKEKTRGRPSFVIWNRK*
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mRNA from alignment at H-elongata_contig55741:2006..3131+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55741.13002.1 ID=mRNA_H-elongata_contig55741.13002.1|Name=mRNA_H-elongata_contig55741.13002.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1126bp|location=Sequence derived from alignment at H-elongata_contig55741:2006..3131+ (Himanthalia elongata Himel1 dioecious)
GCAGCTAGAAAAAAAATAACGGCGCCTGCACTCACCCGCAACAAGTCGCA
CCGAAATCATTTATTCGCGTCAACTGGAGACGCTTTAGGGGAACGAACAA
AATACACTTGGACGACGCCAAAACTCTCGGTCCTACCAGCAAGTATCGAT
TTCCTCAACCGAAGCGGCAGCCAGCTGTTGTCAAGGTAAGGTGTGTCTTG
TGTAGAAGAGTCTCTCACATGTAAATATATGTATCTATACATGAAAATAG
CATATATATAGAGAGAGCTAAGCTTGTTTTCCTCCGCTCAAGAGAAGTTC
TAAAAAAAGGGCAAATGAATCACCGCTCATTCTGGGTGCGCACGCCGACA
ACGATGATCATCGAACGATCGACCCTCCTATGTTGAACAAAGAGTCGAGT
CATGCCACCGCTTACGCTCCTGCCTCAATAATCATCATCATCCTAGGCAT
TTATAATATTAAAATATCCTGGCGTGACACCGTCTCTTCCCTGAACCGCA
CCTGCTATCGAAGCTGGTCTCTTCTTCTCCTTCCGCCGCTTGATTTCCGA
GAGCAGGCGCTTTTGCCCCCGTCGGAACTTTCGGTGTTTGAACTCCCACC
ATTCCGCCTCGTGCTCCGGTCGCCTACCTTGCCCATCGCTCGTGCTGGAT
GGACTTCTGACGCGGCTGAACCCTGGTGCGTGTTTCCATGAGCGACCGCG
CACACGCCGAGGTGCACATGCCCAGCGGATGTCGAACAGATCACAGACAA
AAGAGAAAACACGCGGAAGGCCGTCATTTGTCATTTGGAACAGGAAATAA
CTTGAGGCTCGAGGTATATCTATCTATCTCTCTCTCTCTATATATATAAA
GTATATATACAAGTATAATATATACGGAAGTATATATACTATATACATAT
GTAGTCTATATAATATACAGTATGATGGGACGCATCACCCCGAGAAAAAG
TGATCGGATGATAAACAAGGCGGGAGTGGAGTGCAAGCCGGCTGTTCTGG
ATTATGCTGCAGATATTCACTAGCCGTGGAAAATGATCACATCGTACACT
CGTCATGCTCAGAAGCTCATGTCATGTGTCCCATTTTGGTGTCGAATGCA
CAGGTTCGCGTGTGCAAATAATAGGC
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Coding sequence (CDS) from alignment at H-elongata_contig55741:2006..3131+

>mRNA_H-elongata_contig55741.13002.1 ID=mRNA_H-elongata_contig55741.13002.1|Name=mRNA_H-elongata_contig55741.13002.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig55741:2006..3131+ (Himanthalia elongata Himel1 dioecious)
GCAGCTAGAAAAAAAATAACGGCGCCTGCACTCACCCGCAACAAGTCGCA
CCGAAATCATTTATTCGCGTCAACTGGAGACGCTTTAGGGGAACGAACAA
AATACACTTGGACGACGCCAAAACTCTCGGTCCTACCAGCAAGTATCGAT
TTCCTCAACCGAAGCGGCAGCCAGCTGTTGTCAAGGCAGCTAGAAAAAAA
ATAACGGCGCCTGCACTCACCCGCAACAAGTCGCACCGAAATCATTTATT
CGCGTCAACTGGAGACGCTTTAGGGGAACGAACAAAATACACTTGGACGA
CGCCAAAACTCTCGGTCCTACCAGCAAGTATCGATTTCCTCAACCGAAGC
GGCAGCCAGCTGTTGTCAAGGCGCTTTTGCCCCCGTCGGAACTTTCGGTG
TTTGAACTCCCACCATTCCGCCTCGTGCTCCGGTCGCCTACCTTGCCCAT
CGCTCGTGCTGGATGGACTTCTGACGCGGCTGAACCCTGGTGCGTGTTTC
CATGAGCGACCGCGCACACGCCGAGGTGCACATGCCCAGCGGATGTCGAA
CAGATCACAGACAAAAGAGAAAACACGCGGAAGGCCGTCATTTGTCATTT
GGAACAGGAAATAAGCGCTTTTGCCCCCGTCGGAACTTTCGGTGTTTGAA
CTCCCACCATTCCGCCTCGTGCTCCGGTCGCCTACCTTGCCCATCGCTCG
TGCTGGATGGACTTCTGACGCGGCTGAACCCTGGTGCGTGTTTCCATGAG
CGACCGCGCACACGCCGAGGTGCACATGCCCAGCGGATGTCGAACAGATC
ACAGACAAAAGAGAAAACACGCGGAAGGCCGTCATTTGTCATTTGGAACA
GGAAATAA
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