mRNA_H-elongata_contig100096.13.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100096.13.1
Unique NamemRNA_H-elongata_contig100096.13.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig100096.13.1 vs. uniprot
Match: A0A6H5KX57_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX57_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.090e-35
Identity = 78/125 (62.40%), Postives = 87/125 (69.60%), Query Frame = 1
Query:    1 RTYQARIVEECEKANTIVVLPTGSGKTIIAAEVIKRLGSPALFLVPTVLLVQQQASALQSWTGLRVAKYHGGLALPTS-FDVLVATPTAFKAAQHRHCCPATGRSPLHWLELRVVVFDEVRCHHM 372
            R YQ+RI  +C   NTIVVLPTGSGKT++AAE IKRLG PALFLVPT L+V QQA AL SWTGL V KY GG  LP S F +LV+TP AFKAAQ        G   L W   RVV+FDEV  HH+
Sbjct:   25 RGYQSRIANKCLHDNTIVVLPTGSGKTLLAAEAIKRLGPPALFLVPTRLMVDQQAEALGSWTGLSVTKYMGGAGLPPSTFKILVSTPQAFKAAQQN------GIGHLQWSAFRVVIFDEV--HHV 141          
BLAST of mRNA_H-elongata_contig100096.13.1 vs. uniprot
Match: A0A1Q9EU77_SYMMI (Endoribonuclease Dicer-like 2a n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EU77_SYMMI)

HSP 1 Score: 132 bits (333), Expect = 1.080e-33
Identity = 69/125 (55.20%), Postives = 92/125 (73.60%), Query Frame = 1
Query:    1 RTYQARIVEEC-EKANTIVVLPTGSGKTIIAAEVIKRLGSPALFLVPTVLLVQQQASALQSWTGLRVAKYHGGLALPTSFDVLVATPTAFKAAQHRHCCPATGRSPLHWLELRVVVFDEVRCHHM 372
            R YQAR++EE     NT+VVLPTG+GKT+IA+E+I+RLG P LFLVPT LLV+QQA A++ WTGL+VA++ GG++LP  FDVLV+TP AF+  Q +      G +   W   ++VVFDEV  HH+
Sbjct:    4 RAYQARLLEEILASGNTLVVLPTGAGKTLIASELIRRLGPPCLFLVPTCLLVEQQAKAVRDWTGLQVAEFMGGMSLPAHFDVLVSTPKAFQMTQSK------GAAVFQWDAFKLVVFDEV--HHV 120          
BLAST of mRNA_H-elongata_contig100096.13.1 vs. uniprot
Match: A0A812TEW1_9DINO (DCL2A protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812TEW1_9DINO)

HSP 1 Score: 132 bits (333), Expect = 1.800e-33
Identity = 69/125 (55.20%), Postives = 92/125 (73.60%), Query Frame = 1
Query:    1 RTYQARIVEEC-EKANTIVVLPTGSGKTIIAAEVIKRLGSPALFLVPTVLLVQQQASALQSWTGLRVAKYHGGLALPTSFDVLVATPTAFKAAQHRHCCPATGRSPLHWLELRVVVFDEVRCHHM 372
            R YQAR++EE     NT+VVLPTG+GKT+IA+E+I+RLG P LFLVPT LLV+QQA A++ WTGL+VA++ GG++LP  FDVLV+TP AF+  Q +      G +   W   ++VVFDEV  HH+
Sbjct:    4 RAYQARLLEEILASGNTLVVLPTGAGKTLIASELIRRLGPPCLFLVPTCLLVEQQAKAVRDWTGLQVAEFMGGMSLPAHFDVLVSTPKAFQMTQSK------GAAVFQWDAFKLVVFDEV--HHV 120          
BLAST of mRNA_H-elongata_contig100096.13.1 vs. uniprot
Match: A0A7S4V2U7_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4V2U7_9DINO)

HSP 1 Score: 127 bits (318), Expect = 1.300e-31
Identity = 71/125 (56.80%), Postives = 87/125 (69.60%), Query Frame = 1
Query:    1 RTYQARIVEECEKA-NTIVVLPTGSGKTIIAAEVIKRLGSPALFLVPTVLLVQQQASALQSWTGLRVAKYHGGLALPTSFDVLVATPTAFKAAQHRHCCPATGRSPLHWLELRVVVFDEVRCHHM 372
            R YQ+RIV + E + NT+VVLPTG+GKT+IAAE+IKR+G   LFLVPT LLV+QQA A+  WT L V +Y GG  LP+ F VLV+TP AF+ AQ      A G   L W   R+VVFDEV  HH+
Sbjct:    4 RPYQSRIVGQAEASGNTVVVLPTGAGKTLIAAELIKRVGGTCLFLVPTCLLVEQQAKAVGKWTKLSVGEYMGGATLPSRFQVLVSTPKAFQVAQ------AKGTVSLAWSAFRLVVFDEV--HHV 120          
BLAST of mRNA_H-elongata_contig100096.13.1 vs. uniprot
Match: A0A812RBN0_9DINO (DCL2A protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812RBN0_9DINO)

HSP 1 Score: 126 bits (317), Expect = 1.870e-31
Identity = 69/125 (55.20%), Postives = 87/125 (69.60%), Query Frame = 1
Query:    1 RTYQARIVEEC-EKANTIVVLPTGSGKTIIAAEVIKRLGSPALFLVPTVLLVQQQASALQSWTGLRVAKYHGGLALPTSFDVLVATPTAFKAAQHRHCCPATGRSPLHWLELRVVVFDEVRCHHM 372
            R YQ RIV++     NTIVVLPTG+GKT+IA+E++KRLG   LFLVPT LLV+QQA A++ WTGLRVA++ GG ++P  FDVLV+TP AF      H   A G     W   ++VVFDEV  HH+
Sbjct:   20 RGYQQRIVDDALTTGNTIVVLPTGAGKTLIASELMKRLGPGCLFLVPTCLLVEQQAKAIREWTGLRVAEFMGGASMPQQFDVLVSTPKAF------HTMQAKGVRSFRWDAFKLVVFDEV--HHV 136          
BLAST of mRNA_H-elongata_contig100096.13.1 vs. uniprot
Match: A0A6H5L3L3_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L3_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 8.030e-31
Identity = 71/125 (56.80%), Postives = 85/125 (68.00%), Query Frame = 1
Query:    1 RTYQARIVEECEKANTIVVLPTGSGKTIIAAEVIKRLGSPALFLVPTVLLVQQQASALQSWT-GLRVAKYHGGLALPT-SFDVLVATPTAFKAAQHRHCCPATGRSPLHWLELRVVVFDEVRCHH 369
            R YQ+RI   CE+ NT+VVLPTGSGKTIIAAEVIK+    ALFLVPT  LV+QQA  L++WT   R+A+  GG  L   SFDVLVATP AF A Q +       R+ L W   +VVVFDEVR ++
Sbjct:   49 RPYQSRIARACERDNTLVVLPTGSGKTIIAAEVIKQRPPRALFLVPTRHLVKQQAKVLRAWTFRRRIAQLRGGDELQKKSFDVLVATPDAFCAVQGKE------RTRLAWARFQVVVFDEVRSNY 167          
BLAST of mRNA_H-elongata_contig100096.13.1 vs. uniprot
Match: A0A2V3IZ19_9FLOR (Endoribonuclease Dicer-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ19_9FLOR)

HSP 1 Score: 117 bits (293), Expect = 2.600e-28
Identity = 64/123 (52.03%), Postives = 82/123 (66.67%), Query Frame = 1
Query:    1 RTYQARIVEECEKANTIVVLPTGSGKTIIAAEVIKRLGSPALFLVPTVLLVQQQASALQSWTGLRVAKYHGGLALPTSFDVLVATPTAFKAAQHRHCCPATGRSPLHWLELRVVVFDEVRCHH 369
            R YQ RI+++    NT+VVLPTG+GKT+IA EVI+ L  PALF+VPTVLLV+QQ+ A+ + T  +VA+ HGG +LP S+ V+VATP  F A Q  +         L W   R VVFDEV  HH
Sbjct:   15 RPYQQRIIDQAVLKNTLVVLPTGAGKTLIATEVIRTLSPPALFIVPTVLLVKQQSEAIAAHTNYKVAQLHGGKSLPHSWHVVVATPACFHATQSAY-------PSLAWARFRSVVFDEV--HH 128          
BLAST of mRNA_H-elongata_contig100096.13.1 vs. uniprot
Match: A0A812IWI1_SYMPI (CFAP61 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812IWI1_SYMPI)

HSP 1 Score: 110 bits (275), Expect = 1.240e-25
Identity = 64/123 (52.03%), Postives = 84/123 (68.29%), Query Frame = 1
Query:    7 YQARIVEECEKA-NTIVVLPTGSGKTIIAAEVIKRLGSPALFLVPTVLLVQQQASALQSWTGLRVAKYHGGLALPTSFDVLVATPTAFKAAQHRHCCPATGRSPLHWLELRVVVFDEVRCHHM 372
            YQ RIV E   A N IVVLPTG+GKT+IA+E+I  LG P L  VPT +LV+QQA A + WTGL+VA++ GG+++P  FDVLV+TP AF+  Q R      G +   +   ++VVFDEV  HH+
Sbjct: 1998 YQERIVTEVRAAGNAIVVLPTGAGKTLIASELITGLGPPCL--VPTCMLVEQQARAAREWTGLQVAEFMGGVSVPQRFDVLVSTPKAFQMTQSR------GAASFRFQGFKLVVFDEV--HHV 2110          
BLAST of mRNA_H-elongata_contig100096.13.1 vs. uniprot
Match: K0T118_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T118_THAOC)

HSP 1 Score: 95.1 bits (235), Expect = 2.920e-20
Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = 1
Query:   64 TGSGKTIIAAEVIKRLGSPALFLVPTVLLVQQQASALQS-WTGLRVAKYHGGLALPTSFDVLVATPTAFKAAQHRHCCPATGRSPLHWLELRVVVFDEVRCHHM 372
            T SGKT++AAE+I RLG+P++F VPTV LV QQA+A+ S    L + ++HG   LPT+FDVLV TP AF  AQ R  C       L W   +VVVFDEV  HH+
Sbjct:  434 TRSGKTLVAAEIIARLGTPSVFFVPTVPLVGQQATAIGSRLPSLSIGEFHGEKPLPTTFDVLVTTPKAFDIAQTRGSCA------LSWSNFKVVVFDEV--HHV 529          
BLAST of mRNA_H-elongata_contig100096.13.1 vs. uniprot
Match: A0A836C8Q2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Q2_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.690e-16
Identity = 59/128 (46.09%), Postives = 71/128 (55.47%), Query Frame = 1
Query:    1 RTYQARIVEECEKANTIVVLPTGSGKTIIAAEVI-----KRLGSPALFLVPTVLLVQQQASALQSWTGLRVAKYHGGLALPTSFDVLVATPTAFKAAQHRHCCPATGRSPLHWLELRVVVFDEVRCHH 369
            R YQ RI  +  K N +VVLPTG+GKT++AAE I     K+    ALFLVPT  LV QQA  ++  TGL VA+  GG AL     VLVATP A++           G S L      V+V DEV  HH
Sbjct:   29 RGYQERICMDMAKGNHLVVLPTGAGKTLVAAECIAAELWKQPTKRALFLVPTRNLVHQQAQVIEGETGLDVAELKGGNALRIGCRVLVATPGAYQQQ---------GASVLKLASFSVIVVDEV--HH 145          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100096.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KX57_9PHAE1.090e-3562.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1Q9EU77_SYMMI1.080e-3355.20Endoribonuclease Dicer-like 2a n=3 Tax=Symbiodiniu... [more]
A0A812TEW1_9DINO1.800e-3355.20DCL2A protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A7S4V2U7_9DINO1.300e-3156.80Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A812RBN0_9DINO1.870e-3155.20DCL2A protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
A0A6H5L3L3_9PHAE8.030e-3156.80Helicase ATP-binding domain-containing protein n=1... [more]
A0A2V3IZ19_9FLOR2.600e-2852.03Endoribonuclease Dicer-like n=1 Tax=Gracilariopsis... [more]
A0A812IWI1_SYMPI1.240e-2552.03CFAP61 protein n=1 Tax=Symbiodinium pilosum TaxID=... [more]
K0T118_THAOC2.920e-2052.88Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A836C8Q2_9STRA1.690e-1646.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100096contigH-elongata_contig100096:780..1154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.6
Seed ortholog evalue5e-31
Seed eggNOG ortholog2880.D7FQZ7
KEGG koko:K11592
KEGG Pathwayko05206,map05206
EggNOG free text desc.helicase activity
EggNOG OGsCOG0571@1,COG1111@1,KOG0354@2759,KOG0701@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929543.6559277-CDS-H-elongata_contig100096:779..11541622929543.6559277-CDS-H-elongata_contig100096:779..1154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100096 780..1154 +
1691679062.155899-CDS-H-elongata_contig100096:779..11541691679062.155899-CDS-H-elongata_contig100096:779..1154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100096 780..1154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100096.13.1prot_H-elongata_contig100096.13.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100096 780..1154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100096.13.1

>prot_H-elongata_contig100096.13.1 ID=prot_H-elongata_contig100096.13.1|Name=mRNA_H-elongata_contig100096.13.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
RTYQARIVEECEKANTIVVLPTGSGKTIIAAEVIKRLGSPALFLVPTVLL
VQQQASALQSWTGLRVAKYHGGLALPTSFDVLVATPTAFKAAQHRHCCPA
TGRSPLHWLELRVVVFDEVRCHHM*
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mRNA from alignment at H-elongata_contig100096:780..1154+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100096.13.1 ID=mRNA_H-elongata_contig100096.13.1|Name=mRNA_H-elongata_contig100096.13.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=375bp|location=Sequence derived from alignment at H-elongata_contig100096:780..1154+ (Himanthalia elongata Himel1 dioecious)
CGCACCTACCAAGCACGTATAGTGGAGGAGTGCGAGAAGGCCAATACGAT CGTGGTGTTGCCCACTGGTTCTGGCAAGACTATCATCGCAGCTGAGGTTA TCAAGCGGCTCGGGTCTCCGGCGCTGTTCCTCGTCCCAACGGTTCTTCTG GTCCAGCAGCAAGCGTCGGCCTTGCAATCCTGGACGGGCCTCCGCGTCGC CAAGTACCATGGTGGCCTCGCCTTGCCGACATCATTCGATGTGCTCGTCG CCACTCCCACAGCGTTCAAGGCTGCTCAGCACCGTCATTGCTGCCCTGCG ACTGGAAGATCCCCACTCCACTGGCTTGAACTACGGGTCGTGGTCTTCGA CGAGGTACGTTGTCATCACATGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig100096:780..1154+

>mRNA_H-elongata_contig100096.13.1 ID=mRNA_H-elongata_contig100096.13.1|Name=mRNA_H-elongata_contig100096.13.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig100096:780..1154+ (Himanthalia elongata Himel1 dioecious)
CGCACCTACCAAGCACGTATAGTGGAGGAGTGCGAGAAGGCCAATACGAT
CGTGGTGTTGCCCACTGGTTCTGGCAAGACTATCATCGCAGCTGAGGTTA
TCAAGCGGCTCGGGTCTCCGGCGCTGTTCCTCGTCCCAACGGTTCTTCTG
GTCCAGCAGCAAGCGTCGGCCTTGCAATCCTGGACGGGCCTCCGCGTCGC
CAAGTACCATGGTGGCCTCGCCTTGCCGACATCATTCGATGTGCTCGTCG
CCACTCCCACAGCGTTCAAGGCTGCTCAGCACCGTCATTGCTGCCCTGCG
ACTGGAAGATCCCCACTCCACTGGCTTGAACTACGGGTCGTGGTCTTCGA
CGAGGTACGTTGTCATCACATGTAGCGCACCTACCAAGCACGTATAGTGG
AGGAGTGCGAGAAGGCCAATACGATCGTGGTGTTGCCCACTGGTTCTGGC
AAGACTATCATCGCAGCTGAGGTTATCAAGCGGCTCGGGTCTCCGGCGCT
GTTCCTCGTCCCAACGGTTCTTCTGGTCCAGCAGCAAGCGTCGGCCTTGC
AATCCTGGACGGGCCTCCGCGTCGCCAAGTACCATGGTGGCCTCGCCTTG
CCGACATCATTCGATGTGCTCGTCGCCACTCCCACAGCGTTCAAGGCTGC
TCAGCACCGTCATTGCTGCCCTGCGACTGGAAGATCCCCACTCCACTGGC
TTGAACTACGGGTCGTGGTCTTCGACGAGGTACGTTGTCATCACATGTAG
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